bub3 (bub3)


Basic Information

Item Value
gene id bub3
gene name bub3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24677184 ~ 24685154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915787.2
GCCGCGTGAGACAGGGGCTTAACAGACACAGTAATACGGTTAGCGACGCGACTAGCCGCTGGAGCATTAGCTTAgctttactgttttattaattcttcacatttttaaatagaaaatctTTTATTAGGAAGTTCAACGATGACGGGTTCAAACGAGTTCAAGCTGAACCAGGGACCTGACGACAGCATCTCAGCCGTGAAGTTCAGCCCCAACACCTCTCAGTTCCTCTTGGTCTCCTCCTGGGACTCCACCGTCCGTCTCTACGATGTCGGTGGAAATTCGATGAGAATGAAGTACCAGCATCTGGCGCCGGTCCTCGACTGCGCTTTCTACgatCCGACTCACGCGTGGAGCGGCGGCCTCGACAATCAGCTCAAGATGCACGACTTAAATACAGACCAAGATACGATCGTCGGGACGCACGAAGCCCCTATACGGTGCGTGGAGTATTGCCCGGAGGTCAACGTCATGGTAACGGGCAGCTGGGACATGAGCGTGAGGCTGTGGGATCCACGGACGCCGTGCAACGCCGGGACTTTCACCCAGCCAGAGAAGGTTTACACGCTGTCCGTGGCCGGCGATCGTCTCATCGTGGGTACGGCGGGACGCAGGGTGCTGGTGTGGGACCTGAGGAACATGGGATACGTCCAGCAGAGACGAGAATCCAGCCTCAAGTATCAGACGCGCTGCATACGAGCCTTTCCCAACAAACAGggcTACGTGCTGAGCTCGATCGAGGGCCGAGTAGCCGTGGAGTACCTGGACCCAAGTTTGGAGGTGCAGAAGAAGAAGTACGCCTTTAAATGCCACCGTCTGAAGGAGAACGGCATCGAGCAGGTGTATCCCGTCAACGCCATCTCCTTCCACAGCATCCACAACACCTTCGCCACAGGTGGCTCCGACGGCTTCGTGAACATCTGGGACCCGTTCAATAAGAAGCGTCTGTGTCAGTTCCATCGTTACCCGACCAGCATCGCTTCCCTGGCCTTCAGCAGCGACGGCTCTCTGCTGGCCATCGCCTCCTCGTACATGCAGGAGCAGGGCGACATCTCGCACCCGCCCGACGCCATCTACATCCGCCAGGTCACCGACGCCGAGACCAAGCCCAAGTaa
>XM_034309056.1
GCCGCGTGAGACAGGGGCTTAACAGACACAGTAATACGGTTAGCGACGCGACTAGCCGCTGGAGCATTAGCTTAgctttactgttttattaattcttcacatttttaaatagaaaatctTTTATTAGGAAGTTCAACGATGACGGGTTCAAACGAGTTCAAGCTGAACCAGGGACCTGACGACAGCATCTCAGCCGTGAAGTTCAGCCCCAACACCTCTCAGTTCCTCTTGGTCTCCTCCTGGGACTCCACCGTCCGTCTCTACGATGTCGGTGGAAATTCGATGAGAATGAAGTACCAGCATCTGGCGCCGGTCCTCGACTGCGCTTTCTACgatCCGACTCACGCGTGGAGCGGCGGCCTCGACAATCAGCTCAAGATGCACGACTTAAATACAGACCAAGATACGATCGTCGGGACGCACGAAGCCCCTATACGGTGCGTGGAGTATTGCCCGGAGGTCAACGTCATGGTAACGGGCAGCTGGGACATGAGCGTGAGGCTGTGGGATCCACGGACGCCGTGCAACGCCGGGACTTTCACCCAGCCAGAGAAGGTTTACACGCTGTCCGTGGCCGGCGATCGTCTCATCGTGGGTACGGCGGGACGCAGGGTGCTGGTGTGGGACCTGAGGAACATGGGATACGTCCAGCAGAGACGAGAATCCAGCCTCAAGTATCAGACGCGCTGCATACGAGCCTTTCCCAACAAACAGggcTACGTGCTGAGCTCGATCGAGGGCCGAGTAGCCGTGGAGTACCTGGACCCAAGTTTGGAGGTGCAGAAGAAGAAGTACGCCTTTAAATGCCACCGTCTGAAGGAGAACGGCATCGAGCAGGTGTATCCCGTCAACGCCATCTCCTTCCACAGCATCCACAACACCTTCGCCACAGGTGGCTCCGACGGCTTCGTGAACATCTGGGACCCGTTCAATAAGAAGCGTCTGTGTCAGTTCCATCGTTACCCGACCAGCATCGCTTCCCTGGCCTTCAGCAGCGACGGCTCTCTGCTGGCCATCGCCTCCTCGTACATGCAGGAGCAGGGCGACATCTCGCACCCGCCCGACGCCATCTACATCCGCCAGGTCACCGACGCCGAGACCAAGCCCAAGTCGACCTGAGGCCGTGTTCAGGATCGAACGCTCCCGAAGTGTTACCCTGATAAAGTTCTGCTGGTATCCAgttgttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacttttctTCCCCTTTTCTACACCTTCTCCTTTTCTCATCTTTGTTAGTAT

Function

symbol description
bub3 Predicted to enable ubiquitin binding activity. Predicted to be involved in mitotic spindle assembly checkpoint signaling. Predicted to be part of bub1-bub3 complex and mitotic checkpoint complex. Predicted to be active in kinetochore. Orthologous to human BUB3 (BUB3 mitotic checkpoint protein).

NR:

description
PREDICTED: mitotic checkpoint protein BUB3 isoform X1

GO: NA

KEGG:

id description
K02180 BUB3; cell cycle arrest protein BUB3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915787.2 False 1113 mRNA 0.56 7 24677184 24682775
XM_034309056.1 True 1306 mRNA 0.55 8 24677184 24685154

Neighbor

gene id symbol gene type direction distance location
LOC113527709 hmx2 coding upstream 2608 24669218 ~ 24674576 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding upstream 87351 24539290 ~ 24589833 (+)
oat oat,LOC107569518,LOC107684577 coding upstream 278737 24380301 ~ 24398447 (+)
fam53b fam53b coding upstream 353570 24285081 ~ 24323614 (+)
hpdl hpdl coding upstream 403361 24267278 ~ 24273823 (+)
LOC113527566 ikzf5 coding downstream 176262 24861416 ~ 24864681 (+)
lrit1b lrit1 coding downstream 313796 24998950 ~ 25003270 (+)
lrit2 lrit2 coding downstream 322694 25007848 ~ 25013291 (+)
LOC113527669 LOC108273607 coding downstream 378446 25063600 ~ 25079829 (+)
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding downstream 461515 25146669 ~ 25153897 (+)
G202115 NA non-coding upstream 1026 24675682 ~ 24676158 (+)
G202007 NA non-coding upstream 194742 24480257 ~ 24482442 (+)
G201844 NA non-coding upstream 338454 24338134 ~ 24338730 (+)
G201843 NA non-coding upstream 339116 24337024 ~ 24338068 (+)
G201782 NA non-coding upstream 440405 24203862 ~ 24236779 (+)
LOC113527734 NA non-coding downstream 104166 24789320 ~ 24791405 (+)
LOC117598647 NA non-coding downstream 131327 24816481 ~ 24818352 (+)
G202172 NA non-coding downstream 160679 24845833 ~ 24891292 (+)
G202173 NA non-coding downstream 167133 24852287 ~ 24853885 (+)
LOC117598464 NA non-coding downstream 187800 24872954 ~ 24894054 (+)
LOC113527710 hmx3 other upstream 10576 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 171108 24455659 ~ 24506076 (+)
G201962 NA other upstream 294897 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 988767 23604837 ~ 23688417 (+)
G201214 NA other upstream 1347613 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 644055 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 812561 25497715 ~ 25498919 (+)
G202374 NA other downstream 813026 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 1314497 25999651 ~ 26005825 (+)

Expression


Co-expression Network