LOC113527713 (fam196a)


Basic Information

Item Value
gene id LOC113527713
gene name fam196a
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19526642 ~ 19566684 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915793.2
cacagcctctcagAGAGTGCGGCGTTGCAGCCACAAGATGAATCCCTTGCACATGCCGTCGCTAAGAGCCGGACTTCTGCGCTGCATCCTGTCCCTTTTGCGAATGTGCATGAGTGCGactgtgggggtgtgtgtgtgtgagtgtgagtgactACGGCTCACACAGGCACAACGGCATATCAGACTGGAGTCGAAGACTATTCTGTGTTTGGAATCTCTGTCTTTGTGGATGTGTAAGGGTGGAAATGAAGTGACAAACGAGCGACGTGCGTCCTCTGCGCGACTCGCAGCATGGCAGCCCCTCTTACGTCTCTCCCATGCGTTCGTCTGCCCTTTCTTGTCTCCTCTTGTGCTCCATCTGTCCGAAGCCTGCTGCACTGAAAGAGttagagcaagagagagagagagagggagggagagagagagagagagagagaggggacatGCGCTGGCCAGAGCGGCGCTCTCTGCCTCAGCTCCTTCACTGACCCGCATCTGGAGGAACCATGGTGAGCAAAGAGGTTGGTAAATGCATGCTCACCAACTCTGAATCAGACTCTGAGGCAGCACCCTCTATGGCCCTGGAGGTGAAAAGACCGCCGGATGGGAGTCGGCAGGTTCGCAAGCGCAACAAAGCCTTGCAGGTACGCTTCAAGGACATCTGTGAGGCCCAGAGTGAGCAAGCAGCTGCGGCACAGGGAGCGAAGCCCGTCTCATATAAAGTGGCATATCGCAAGTACATGACCGTTCCAGCCCGCAGATCCATACCCAATGTGACAAAAAGCACTGGAGTGCAGACCTCTCCGGACCTGAGGAAGCGCTACCAGACTTTCCCACTGGAGAGGAAAAAGGGTCAAAGTGTGAAACATGCGGCTACAGCGGAGAGCTATAAGGACCAGGATAATGGATTTGTTATTGATGTTAAGAGGGCCAAAGCAGCTGAGGGGGGAAGGGAAGAGACATCATCTCACACCGTACAAAAGACCAAAGCTTTGATGCACACTAATGAGTGCATAGCCACCATAGAGCACCACTCACATGCTGCAGAATGTACAGACAGGACACTGTTGCCCTGTCCCTCAGAGGACCAATCAAATTACCAGATCTGTACGGTGAAGAGCAAACATCGAAAGAGCTTCCAAAGGGACTCAGAGTCATTGGACCGCTCAGGAAAATGGCAAATAATAAATTCTGAGGACAGAGATGGCAGTACACTGCCAAACTCTAGCTCCAAAGTGACAAGCCCCATAGCCTGGAACTCCTTAACGCAGGTGGAGTGTCTGGAGAGCCCGACGGCACGCAGCAAGCGCAAAAAGGTCCTGCAGCTAAATGGCCTGCAATCACAGACACTGCCGAGGACTGGCTGCACCACACAAGTGCAGTGCCATGCTGGAATGATCTCTGCTCGGCCCATACAGGCAATGGAGGAAGCAGCAGCGGCATCGGTTGCTGCTGCACCTGCTGCTGTTCTACCACCCTCATGTGAGGCTGGGACAGGAACAGTACAAGGCACAGGGAATCTACAGGTGGATAGCGAGGCTTGCAAGCAGATAGTGCCTGTGAATCAGGATAAGGATGTAAAAGCACAGTTGCAAGCCATGGAGAACATGATCAGCTCCAGTCAGGAAACCATCAAAGTCCTGCTGGGAGTCATTCAGGAGCTGGAGAAAGGAGAGGCTCTCAGAGAAGGTCTCTCCTATCGGACCGGGCAGGACACGGCCAACTGCGACACATGCCGGAACAGCGCATGCATTATTTACAGtgtggagcTGGACTTTAAGCAGCAGGAGGACAAGCTGCAGCCGCTGATGAGGAGGTTGTGCTCAGTGGAGGACCCGTCCTTCCCCTCTCTGCCTTACCCTCAGGAGGCCTACACCTCCACTCCCAAACGCAAGGCCAAAGCCGAGGCCAAGAAACACACGCGTTGGAAACTGTGGTTCCTCTGAACACAGCGCTCGGCAGGACATGCGCACATGTTTCTACATTGTCCCTGTCTTCATCTTTCTCCGTTCCTGCCCTGTGTCTTTTTACACTTTCATCATTCTATCACcacagaaaaatggaaaaaaaggtgGATCCTGAACACTGAACCTGGCTAGCGCCTgcttcaaattaaaaatgaagtcTCCTGGGAACTGGATTCTGGGAAGCAGAATATTTTGGGCAATTGTGCCCAGAGTGTGAAACGGCTCTATTTGCAATTCAGCGAGGTGAGAAACCAGATTGAATTAAGCTGCTGCAAAGTCCtgcatttaaatgtatataaaaaaaatccattatttatttatacacgaGCGCATCACCTCTGCTTAGGTTATTCATATGAACCCCTCCCCTATCCACATCTTTAAGCACCACCTGATGGCTATTTAGTCACCTGATGGCTGAGGTGCCTCTcattctcacaaaaaaaaaaaaaagaaagggaaagtcACATTTTCTGTGGACTAAAGTAAGTTATTATTCGTCATGAATATCAACATGACTGGAGTTGCACCAATAAGACAAAGCACAAGGACACTACAGATTCCACTACAGATGAAGTGGATTCAACACATGGACTTGGACTTACACAGACATTTAGACAAAATGGAAAGACACTTATTTAATCtacggagaaaaaaaaggaaaagaaaataagttCCGCAGCTATTTATCAAATTTCTATATCATGTTTCAGGAGCTCTAGACATCTCTTGCGATGttaatttaaagagaaaaaaaaagaaaaagaaaacaagtaccagatatttttatatattcgTAATATCAAgcattaaattcaaattttctaatacataatatatgAAGTTATATCTTCCTTTACTGGATTATTAAAATactccaaaaaaaagaaaagatgcatCAGAAGGTTGGAAAGCCTGaaccatttttaaatccatcttCCCTTCCTCAAGTCCATCGAGGATCAGGGAACTGAAGAGCACCGTGCAGGAAACAACCTCAGATCTTATACGTGTTGGTGCAACTAGCATTGTGTGAAATAGATGAGGATATTAGAAAGCTGGATAGTGCGTGCTGGGCTGTGCTCGTTTGAGCTAGCAGGTAATGATTTTCAGGAtatcaaataattattttatcctAAACGATGCCAAGCCACGCTTTCCTAATGTTGAGTCCAGACGTACATTTCTAGAcccaaaatgtaaatatcagctttcacttctaaaaataaatatttatctaaTGTAACATCATTATAGCATCATAGAACAATTGCGTGGTAATGAATTAATTTGCGAAGCAGAGCATCTAATCAGGGCTACTAGCATCTCCAGGAACGGGAACGGGTTTCATCGGGGCATTTTGGTCACAGCATCTCTGAAGCCAAAAACAGCATGATGTAGAAAAGACACAACCAGAGTGCTTTATAAGGGCAAACagattcatatttaaataatgaactcTAAAGATTGTTTGATGCGGAGTTCTCCACATTTCACTCTAGACTAGATAAACGCATTATCCCACCTGATCTCTCCTGAGTTATCTTGTACATGAAAGGATCTGACATTCGAATAGTTCAGCTGTAGCGTGAAGAGAGACCTAGATGATATCTGTACCTTAAAGAAGTGCAATTGATTCACTATGTGCAATATTGTgcattttatactgtttttaaaatcaaacaatttaatacataaaataaaacctgaGAA
>XR_004579324.1
cacagcctctcagAGAGTGCGGCGTTGCAGCCACAAGATGAATCCCTTGCACATGCCGTCGCTAAGAGCCGGACTTCTGCGCTGCATCCTGTCCCTTTTGCGAATGTGCATGAGTGCGactgtgggggtgtgtgtgtgtgagtgtgagtgactACGGCTCACACAGGCACAACGGCATATCAGACTGGAGTCGAAGACTATTCTGTGTTTGGAATCTCTGTCTTTGTGGATGTGTAAGGGTGGAAATGAAGTGACAAACGAGCGACGTGCGTCCTCTGCGCGACTCGCAGCATGGCAGCCCCTCTTACGTCTCTCCCATGCGTTCGTCTGCCCTTTCTTGTCTCCTCTTGTGCTCCATCTGTCCGAAGCCTGCTGCACTGAAAGAGttagagcaagagagagagagagagggagggagagagagagagagagagagaggggacatGCGCTGGCCAGAGCGGCGCTCTCTGCCTCAGCTCCTTCACTGACCCGCATCTGGAGGAACCATGGTGAGCAAAGAGGTTGGTAAATGCATGCTCACCAACTCTGAATCAGACTCTGAGGCAGCACCCTCTATGGCCCTGGAGGTGAAAAGACCGCCGGATGGGAGTCGGCAGGTTCGCAAGCGCAACAAAGCCTTGCAGGTACGCTTCAAGGACATCTGTGAGGCCCAGAGTGAGCAAGCAGCTGCGGCACAGGGAGCGAAGCCCGTCTCATATAAAGTGGCATATCGCAAGTACATGACCGTTCCAGCCCGCAGATCCATACCCAATGTGACAAAAAGCACTGGAGTGCAGACCTCTCCGGACCTGAGGAAGCGCTACCAGACTTTCCCACTGGAGAGGAAAAAGGGTCAAAGTGTGAAACATGCGGCTACAGCGGAGAGCTATAAGGACCAGGATAATGGATTTGTTATTGATGTTAAGAGGGCCAAAGCAGCTGAGGGGGGAAGGGAAGAGACATCATCTCACACCGTACAAAAGACCAAAGCTTTGATGCACACTAATGAGTGCATAGCCACCATAGAGCACCACTCACATGCTGCAGAATGTACAGACAGGACACTGTTGCCCTGTCCCTCAGAGGACCAATCAAATTACCAGATCTGTACGGTGAAGAGCAAACATCGAAAGAGCTTCCAAAGGGACTCAGAGTCATTGGACCGCTCAGGAAAATGGCAAATAATAAATTCTGAGGACAGAGATGGCAGTACACTGCCAAACTCTAGCTCCAAAGTGACAAGCCCCATAGCCTGGAACTCCTTAACGCAGGTGGAGTGTCTGGAGAGCCCGACGGCACGCAGCAAGCGCAAAAAGGTCCTGCAGCTAAATGGCCTGCAATCACAGACACTGCCGAGGACTGGCTGCACCACACAAGTGCAGTGCCATGCTGGAATGATCTCTGCTCGGCCCATACAGGCAATGGAGGAAGCAGCAGCGGCATCGGTTGCTGCTGCACCTGCTGCTGTTCTACCACCCTCATGTGAGGCTGGGACAGGAACAGTACAAGGCACAGGGAATCTACAGGTGGATAGCGAGGCTTGCAAGCAGATAGTGCCTGTGAATCAGGATAAGGATGTAAAAGCACAGTTGCAAGCCATGGAGAACATGATCAGCTCCAGTCAGGAAACCATCAAAGTCCTGCTGGGAGTCATTCAGGAGCTGGAGAAAGGAGAGGCTCTCAGAGAAGGTCTCTCCTATCGGACCGGGCAGGACACGGCCAACTGCGACACATGCCGGAACAGCGCATGCATTATTTACAGtgtggagcTGGACTTTAAGCAGCAGGAGGACAAGCTGCAGCCGCTGATGAGGAGGTTGTGCTCAGTGGAGGACCCGTCCTTCCCCTCTCTGCCTTACCCTCAGGAGGCCTACACCTCCACTCCCAAACGCAAGGCCAAAGCCGAGGCCAAGAAACACACGCGTTGGAAACTGTGGTTCCTCTGAACACAGCGCTCGGCAGGACATGCGCACATGTTTCTACATTGTCCCTGTCTTCATCTTTCTCCGTTCCTGCCCTGTGTCTTTTTACACTTTCATCATTCTATCACcacagaaaaatggaaaaaaaggtgGATCCTGAACACTGAACCTGGCTAGCGCCTgcttcaaattaaaaatgaagtcTCCTGGGAACTGGATTCTGGGAAGCAGAATATTTTGGGCAATTGTGCCCAGAGTGTGAAACGGCTCTATTTGCAATTCAGCGAGACACAGCACAAgacaaatgagaaaataaaatgcataaatctgAATGAGATGCCTGACAAGGAGGAAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915793.2 True 3680 mRNA 0.46 4 19526642 19564198
XR_004579324.1 False 2279 misc_RNA 0.53 5 19526642 19566684

Neighbor

gene id symbol gene type direction distance location
LOC113527107 NA coding upstream 153293 19370326 ~ 19373349 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding upstream 605876 18827636 ~ 18920766 (+)
LOC113527622 tcerg1l coding upstream 823885 18614191 ~ 18702757 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 coding upstream 1018784 18498245 ~ 18507858 (+)
LOC113527495 LOC108273717 coding upstream 1096954 18421553 ~ 18429688 (+)
c12h10orf90 LOC108273407 coding downstream 127714 19694398 ~ 19719754 (+)
LOC113527774 LOC108273823,LOC108429440 coding downstream 160987 19727671 ~ 19825878 (+)
dhx32a LOC108273822,LOC108429422 coding downstream 263918 19830602 ~ 19841026 (+)
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding downstream 278826 19845510 ~ 19853750 (+)
mrpl38 mrpl38 coding downstream 296628 19863312 ~ 19871403 (+)
G199051 NA non-coding upstream 100047 19426380 ~ 19426595 (+)
LOC113527366 NA non-coding upstream 211827 19309483 ~ 19314815 (+)
G198901 NA non-coding upstream 702081 18823633 ~ 18824561 (+)
G198886 NA non-coding upstream 757952 18768393 ~ 18768690 (+)
G198876 NA non-coding upstream 822943 18703475 ~ 18703699 (+)
G199161 trim65 non-coding downstream 225950 19792634 ~ 19856480 (+)
G199187 NA non-coding downstream 310057 19876741 ~ 19885988 (+)
G199216 NA non-coding downstream 377560 19944244 ~ 19944466 (+)
G199217 psd non-coding downstream 384103 19950787 ~ 19953308 (+)
LOC113527335 NA non-coding downstream 668131 20234815 ~ 20251474 (+)
si:ch211-221j21.3 LOC108273429 other upstream 714380 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1016483 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1366556 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 1954577 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 2663147 16855689 ~ 16863495 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1890707 21457391 ~ 21500929 (+)
G200571 NA other downstream 2436140 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 2441827 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 2447122 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 3231458 22798142 ~ 22871284 (+)

Expression


Co-expression Network