sox9a (sox9)


Basic Information

Item Value
gene id sox9a
gene name sox9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4291951 ~ 4295240 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915800.2
ATGAATCTCCTCGACCCCTACCTCAAGATGACGGACGAGCAAGAGAAGGGCCTATCGGACGCACCGAGTCCGAGCATGTCCGAGGATTCGGCGGGGTCTCCGTGTCCGTCTGCCTCCGGCTCGGGCTCGTGCTCGGACGTGGAGAGCGCCGGTGGGCGCGCGCGCGACAGCGGCGGCGAGCTGAAAAAGGACGTGGACGACGAGCACGAGAACAACGAGAAGTTCCCGCAGTGCATCCGCGAGGCCGTGTCGCAGGTGCTCAAGGGCTACGACTGGACGCTCGTGCCCGTACCGGTGCGCGTGCACGGCGCCAGCAAAAACAAGCCGCACGTGAAAAGGCCCATGAACGCGTTCATGGTGTGGGCGCAGGCCGCGCGCCGCAAACTCGCAGATCAGTATCCTCATCTGCACAACGCCGAGCTGAGCAAGACCCTGGGCAAGTTATGGAGATTGCTGAACGACGTGGAGAAGCGTCCATTCGTGGAAGAGGCTGAGCGCCTGCGTGTGCAACACAAGAAGGATCACCCTGACTACAAGTACCAGCCACGGCGAAGGAAATCAGCCAAGAATGGTCAGGGCGAGGGGGAAGAGGGTGCGGAGCACACACACGTCTCCACCAACGCCATCTTCAAGGCCCTGCAGCAGGCCGACTCTCCAGCATCCAGCATGGGAGAGGTGCACTCCCCCAGCGAGCAGTCAGGCCAGTCCCAGGGTCCCCCGACTCCGCCCACCACCCCCAAAATTGACGCTCAGGCAGGCAAAAGTGAGCCAAAGCGCGAGGGCCGCCCGCTCCAGGATGGCATCGGAGTTACTGTTGGCTCTGGCGGGCAGCGTCAGCTTAACATCGACTTCCGCGACGTGGACCTGGGTGAACTGAGCAGCGACGTCATCTCACACATGGAGAGCTTTGACGTGGCCGAGTTTGACCAGTACCTGCCACCTAACGGGCACCCCGGGCATGGCTGGATGGGTTCAGCGGGCACCGGTTGGATGGCCAAGAGCCCGAGCTCCAGCCCTCAGGTGGGTGCTGCCAGCCCTGGTGAGGATCAGAGCCAGCAGAGGACAGCGCACATCAAAACCGAGCAGCTGAGTCCCAGCCATTACGGCTCCTTTAACCTGCAGCACTACACCACTTCCACTTCATCCTCTGCCTTCCCATCATGCATCAGCCGGCCGCAGTACGACTACACCGACCAGCAAGGCGGCGCGACGTCCTATTACTCAACAGGCCAGAGCTCGATTTATTCCACCTTTAACTACATGAGTCCCAGCCAGAGGCCCATGTACACCCCCATCACCGAGACCCAATCAGGCCACAGCCCCCAGCACTGGGACCAGCAGCCTGTCTACACACAGCTCTCCAGACCCTgagaacgcacacacacacacgcacacacaggcacacacacgcacgcacagatATGTACCCATGCAGTGAAGATTATTTAACAAGGCTGATGGCCCCACATAGCGGCCCTCCATCACTCTTCCTGTAAAGCACACACTTGAATACTCGCCAGAGGAAGACTGGAAGGAAAGCTGGTCTTTAAAAAAGAGCAGCTCACGACGTGCCTTTTTCATCTTTAAATCGCCTGATGCCaattagatatatatttttagcttTGATTGCGAGAAAAGAGAAACGTTTTTCTGCGAAAAGAAGAATCCTCTGTGAGGacttaattaattattgtaCTTTAGTATGTACTGTGTATGTTTTCTTATCTTTTCCATAGCTGATAGGGATTTTATTCTGTAGGGAAACggtttattttttactaaacCACTCTTAGCAGTCCTGCCTAGTCATCCTCATGGCATTTTCTTATCGGCCTCTAGGATTCTGTTTGCTGCGCTAGTGGATCTTCATGCCGTTGCATCCTACATTCAATTCACTTTGGttatttcttgtatttatgattattaaaaatgttcctGATGCTTTAGAGTggtgtatttttaatgtttttgtatgaCATGTCTGCCTTGTGCACCATCAGTGCCTGgtcttgtggggtttttttgtcaAGGTAGAATGTGCAGCTGAGAATTTACTTAGTGCCTGACAGTGGCAGgaagtgacctttgaccccatgTCATTATTTCCAGTCAACAGTTGTACTGGTCTCATCTTTCCACCCTGACTCCCTTTTTTCTGTTCAGTCTTAACCtcttctaatttatttattagtcttaattttatttcagattaattAAGTGCAGCGTATTCATTAATACTGTAAGCAACTAATTATTTTGTCTTTGGAAGTTACCCTTCTGGATATTGTAATGTTTAATCCAAGTCATTAAACCGGAAGGGTTGCTACTTAATATGGTACAGTTCTGTAATcatcatgtttatttatcatatcTAGATGTctctattttaaatgtttatttgtctctttttttccttcttttgtgCTAGCCAGAATTGATGATGAAGTACTGTCAAGGCTGATCGAACTGGAACTGTCAGCTTTCTTCCATCAGGAAGTTTTTTTGAAGCTCTGTTTGAAGCTGTAactgtctttttgtgtgtgtgattgtttatAGAGATACCAGAGATTTCACATCAAATCTTTTCAAAGATCGAATTTTCCATGCCACATATCTTATTCCTGTTGTTACATcttccaaacatttttttttctttcaccagacttaacattttctttaaataa

Function

symbol description
sox9 Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein kinase A catalytic subunit binding activity. Involved in several processes, including animal organ development; positive regulation of cell population proliferation; and regulation of transcription by RNA polymerase II. Located in nucleoplasm. Part of protein-containing complex. Implicated in 46,XX sex reversal 2; 46,XY sex reversal 10; and campomelic dysplasia.

NR:

description
PREDICTED: transcription factor Sox-9-A-like

GO:

id name namespace
GO:0043049 otic placode formation biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0048708 astrocyte differentiation biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915800.2 True 2684 mRNA 0.50 3 4291951 4295240

Neighbor

gene id symbol gene type direction distance location
LOC113527563 LOC108273452,LOC108437319 coding downstream 275638 4013847 ~ 4016313 (-)
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding downstream 287074 4000449 ~ 4004877 (-)
heatr1 heatr1,LOC107560530,LOC107675669,LOC102797743 coding downstream 320066 3938282 ~ 3971885 (-)
arg1 arg1,LOC108273904 coding downstream 356813 3930440 ~ 3935138 (-)
LOC113539277 nt5m,LOC107719901 coding downstream 461137 3815947 ~ 3830814 (-)
LOC113527719 LOC108273413 coding upstream 254868 4550108 ~ 4558134 (-)
mapk8b mapk8b,LOC108274025,LOC108437314,LOC107388204,LOC108263675,LOC103040580 coding upstream 330358 4625598 ~ 4648676 (-)
ubtd1b ubtd1,ubtd1b,LOC108437310 coding upstream 475304 4770544 ~ 4787576 (-)
zdhhc16b LOC108273908,LOC108444288 coding upstream 515412 4810652 ~ 4827352 (-)
fam20a fam20a coding upstream 542671 4837911 ~ 4849678 (-)
G190742 NA non-coding downstream 3148 4288417 ~ 4288803 (-)
G190731 NA non-coding downstream 33197 4254493 ~ 4258754 (-)
G190656 NA non-coding downstream 130944 4159776 ~ 4161007 (-)
G190563 NA non-coding downstream 254611 4036651 ~ 4037340 (-)
G190490 NA non-coding downstream 366721 3920191 ~ 3925230 (-)
G190821 NA non-coding upstream 278442 4573682 ~ 4575530 (-)
G190829 NA non-coding upstream 301299 4596539 ~ 4596823 (-)
G190849 NA non-coding upstream 371072 4666312 ~ 4666571 (-)
G190885 NA non-coding upstream 405864 4701104 ~ 4750877 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 1087755 5382995 ~ 5387137 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 1436458 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 1464199 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 1480560 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 1682178 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2080972 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 616494 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 653923 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 764258 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 1189451 5484691 ~ 5490925 (-)
G191430 NA other upstream 1315880 5611120 ~ 5613954 (-)

Expression


Co-expression Network