zgc:165653 (LOC108274081,LOC108437900,LOC105888795)


Basic Information

Item Value
gene id zgc:165653
gene name LOC108274081,LOC108437900,LOC105888795
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20258874 ~ 20288139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915803.2
AGAAAGGGCGCGTGAGGGGCACACAGAGGCGGCGGGACGACACACGACTTAGACACAAGTTTGAACGTGTAGCATCGGACAGCCGGGAATCAGGCATTTAATTCTTCATAGGCCCGGGTTTGTGTGAGCAGACGCAATCcaatgatgatgacgacgatggTGACGATGAAACAAACGGAGACGCATTACAACAACGGCTACGTGCAGGACGAGTACATGCTGCAGGAGGATGAGTGGGACCGCGACCTGCTGCTCGACCCCGCCTGGGAGAAACAACAGCGCAAGACTTTCACTGCATGGTGCAACTCACACCTGCGTAAGGCTGGGACTCAGATTGAGAACATAGAGGAGGATTTTCGTAATGGACTCAAGTTGATGCTCCTTCTGGAAGTCATCTCTGGTGAAAGGCTGCCTAAACCAGACAGAGGAAAAATGCGATTTCACAAAATAGCCAATGTGAACAAAGCCCTGGAGTACATCACCAGTAAAGGGGTAAAGCTGGTGTCCATTGGAGCAGAAGaGATCGTTGATGGAAATGTAAAGATGACTTTGGGAATGATCTGGACCATTATCCTCCGCTTCGCCATCCAGGACATCTCAGTGGAAgaaacctCAGCTAAAGAGGGTCTGCTGCTGTGGTGCCAGCGGAAGACTGCTCCTTACAGGAACGTCAACGTCCAGAACTTCCACTGCAGCTGGAAGGATGGCCTGGCCTTCTGCGCCcttatacacagacacagacccgaTCTGATTGACTACTCCAAACTCAGCAAGGATGATCATCTAGGCAACCTGAACCTGGCTCTGGAAATTGCAGAGAAACACCTTGACATCCCAAAAATGCTGGATGCAGAAGACATCATCAACACCCCCAAACCTGATGAGAGAGCCATCATGACCTATGTGTCCTGCTTCTACCATGCTTTTGCTGGAGCCGAGCAGGCGGAGACTGCTGCTAACAGGATTTGTAAAGTTCTTGGGGTCAACCAGGAGAATGAGAAACTCATGGAAGACTATGAGAAACTGGCCAGtgagCTGCTTGATTGGATCCGCCGCACCACCCCATGGCTGGAGAACCGCTCTCCCGAGACCACTATGGCGgccatgaggaagaaacttgaAGATTTCCGTGACTATCGTCGCATTCACAAGCCGCCAAAAGTGCAAGAGAAATGTCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAACTGCGTATCAGCAACAGGCCTGCCTACATGCCCTCTGAGGGGAAAATGGTGTCGGACATTACGAGTGCATGGCAGGGTCTGGAGCAGGCAGAGAAAGGCTATGAAGAGTGGTTGCTGAATGAAATTCGACGCCTGGAGCGTCTTGACCACCTGGCTCAGAAATTCCAGCAGAAGGCGTCCACCCATGAGAGCTGGGCTaaaggTAAGGACGAGCTCCTGACTCTGAAGGACTACGAGCGGGCCTCTCTGACCGAGGTGCGGGCGCTGCTCAGGAGGCATGAGGCATTCGAGAGCGACCTTGCCGCACATCAGGACCGAGTGGAGCAGATCGCAGCCATCGCACAGGAACTCAAtgaACTGGACTACCATGCTGCAGCAGCCATTAACGAGCGCTGTCAGCAGATGTGTGATCAGTGGGACCAGCTGGGAACTCTGACTCAGAAACGGAGAGAGGCCCTGgagagGACAGAGAAGTTGCTGGAGACAATTGATCAGCTCTTCCTGGAGTTTGCTAAAAGATCTGCTCCGTTTAATAACTGGATGGAGGGAGCCATGGAGGATCTGCAAGACATGTTCATAGTGCACAGCATAGAGGAGATAGAGAACCTGATTTCGGCCCATGACCAGTTCAAAGCGACGCTGCCCGAGGCAGATGTGGAGAGACAGGCCATCCTGAGCATCTACAACGAGGTGCAGAAAATCTCCCAGACTTACAACATCAATCCCAACCTCACCAACATATACTGCACCATCACCCCGACTGAGATCAACCTCAAATGGGacaaggtgaAAACGCTGGTCCCTCAGAGGGATACTGCGTTACGGGATGAGTTATCCAGGCAGCAAATGAACGAGCGCCTCAGAAGGCAGTTTGCGGCCCAGGCCAACGCGATCGGACCCTGGATACAGGCGCGCATGGAGgagaTTGCAAGCTGCTCTGTGGATGCAGGCGGCACTTTGGAGGATCAGATGAATCAGCTGAAGCAGTGTGAGGGTATGATCATCAACTACAAGCCCAACATCGACAAGCTGGAGGGAGATCACCAGTTTATCCAGGAGTCACTCATATTTGACAACAAACACACCAACTACACCATGGAGCATATTCGTGTTGGATGGGAGCACCTCCTGACGACTGTGGCTCGCACCATCAATGAGATCGAGACTCAGATCCTGACCCGCGACGCCAAGGGCATCAGTCAGCAACAGCTCACCGAGTTTCGCTCATCCTTCAGACACTTTGACAGGAAGAAGAAAGGAGGAATGGACACAGATGAATTCCGTGCATGTCTCATCTCCATGGGTTATGAcctgGGTGAGGCGGAATTTGCTCGGATCATGTCAGTGGTCGATCCGAATAGTAAGGGAACGGTGACGTTCCAGTCGTTTGTGGACTTCATGACCCGTGAGACTACTGAGACTGACACTGCTGAACAAGTTGCCGCCTCCTTCAGGATCCTCGCTGGtgataagCCGTATATAATGATTGAAGAGCTGAGGCGTGAACTGCCTCCTGAACAGGCTGACTACTGCATCGCCAGGATGCCCCTGTACACTGGGCCTGACGGAGTGCCAGGAGCCTTGGATTACCATGCCTTCTCTTCTGCTCTCTATGGAGAGAGTGACCtttgaacaaacacacacacacacacattttttcttctaattGCCATGTGTTACACTACTGTTTCAAGCACGCCCGCCTCCAGCGACTCCAATGACCCTCATGACTCAAAAGCATGTTATCAACTACAACACAGTGTGTCTCCTTCACACTTCAACTATGTGTAGAGTTATATCACCTAGTTTGCTAACTAGATGGTTCACTAATTACCTAGTTTGCTAATTAACTACAGAGAATAAAGTAGCAATGTTACATCAGTAAAAACGTATACCTGAAATATTTGCCTACATAAAAACctaatttgaattaaaaaaaattaaaaatactagCTTATCCACCATGTTTACTGTTTTGAGTAAATACATAGCATCAGATTGCAATGTCATCTTGGTAATTTCTGCTCCAGAGTCACTCTTACTCTGTCTCCATCTACAGTCACATTTCACTCCAAGAGATTATTTTACATactatcatttaaaaaagattagCTGTTTAAATATTGGCACAGTTCTTAAATTGATGACTGGGACTCAATTATGGGAAAAAGGTGAGGGAACCTCAACAAGAGTGCTTTGAAAACAGTATTGGAgcacagatttaattttttttccttgaataAAGTGAAAATACCTTATGGAAAAAGCAGTACTGGTGAAAACTGGTTTAACATTGGAAGGATAATgagaaaaaacattaacatttaaacatttatttctttattaattctgAACCAGGAGAAAAATGAATATGCCTGAACACAGTATATTAGTGACCTTTTACTCGGGTTGTCCATTGTTCAAATTTCTTGTATAACTAATTTCATACCTTGATAATGCACTCCAGAATCAGTTTTGtgcttttgaacatgagattatAACTCACCATAAGCCTctgatgattaattttcagcTGTTTTGTTTCTAAGCAGCTATTGTTAATCAAGAACACACAGAGATTTAATAATCCAATAAAGCCTAATTGATAGCAA
>XM_026915804.2
AGAAAGGGCGCGTGAGGGGCACACAGAGGCGGCGGGACGACACACGACTTAGACACAAGTTTGAACGTGTAGCATCGGACAGCCGGGAATCAGGCATTTAATTCTTCATAGGCCCGGGTTTGTGTGAGCAGACGCAATCcaatgatgatgacgacgatggTGACGATGAAACAAACGGAGACGCATTACAACAACGGCTACGTGCAGGACGAGTACATGCTGCAGGAGGATGAGTGGGACCGCGACCTGCTGCTCGACCCCGCCTGGGAGAAACAACAGCGCAAGACTTTCACTGCATGGTGCAACTCACACCTGCGTAAGGCTGGGACTCAGATTGAGAACATAGAGGAGGATTTTCGTAATGGACTCAAGTTGATGCTCCTTCTGGAAGTCATCTCTGGTGAAAGGCTGCCTAAACCAGACAGAGGAAAAATGCGATTTCACAAAATAGCCAATGTGAACAAAGCCCTGGAGTACATCACCAGTAAAGGGGTAAAGCTGGTGTCCATTGGAGCAGAAGaGATCGTTGATGGAAATGTAAAGATGACTTTGGGAATGATCTGGACCATTATCCTCCGCTTCGCCATCCAGGACATCTCAGTGGAAgaaacctCAGCTAAAGAGGGTCTGCTGCTGTGGTGCCAGCGGAAGACTGCTCCTTACAGGAACGTCAACGTCCAGAACTTCCACTGCAGCTGGAAGGATGGCCTGGCCTTCTGCGCCcttatacacagacacagacccgaTCTGATTGACTACTCCAAACTCAGCAAGGATGATCATCTAGGCAACCTGAACCTGGCTCTGGAAATTGCAGAGAAACACCTTGACATCCCAAAAATGCTGGATGCAGAAGACATCATCAACACCCCCAAACCTGATGAGAGAGCCATCATGACCTATGTGTCCTGCTTCTACCATGCTTTTGCTGGAGCCGAGCAGGCGGAGACTGCTGCTAACAGGATTTGTAAAGTTCTTGGGGTCAACCAGGAGAATGAGAAACTCATGGAAGACTATGAGAAACTGGCCAGtgagCTGCTTGATTGGATCCGCCGCACCACCCCATGGCTGGAGAACCGCTCTCCCGAGACCACTATGGCGgccatgaggaagaaacttgaAGATTTCCGTGACTATCGTCGCATTCACAAGCCGCCAAAAGTGCAAGAGAAATGTCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAACTGCGTATCAGCAACAGGCCTGCCTACATGCCCTCTGAGGGGAAAATGGTGTCGGACATTACGAGTGCATGGCAGGGTCTGGAGCAGGCAGAGAAAGGCTATGAAGAGTGGTTGCTGAATGAAATTCGACGCCTGGAGCGTCTTGACCACCTGGCTCAGAAATTCCAGCAGAAGGCGTCCACCCATGAGAGCTGGGCTaaaggTAAGGACGAGCTCCTGACTCTGAAGGACTACGAGCGGGCCTCTCTGACCGAGGTGCGGGCGCTGCTCAGGAGGCATGAGGCATTCGAGAGCGACCTTGCCGCACATCAGGACCGAGTGGAGCAGATCGCAGCCATCGCACAGGAACTCAAtgaACTGGACTACCATGCTGCAGCAGCCATTAACGAGCGCTGTCAGCAGATGTGTGATCAGTGGGACCAGCTGGGAACTCTGACTCAGAAACGGAGAGAGGCCCTGgagagGACAGAGAAGTTGCTGGAGACAATTGATCAGCTCTTCCTGGAGTTTGCTAAAAGATCTGCTCCGTTTAATAACTGGATGGAGGGAGCCATGGAGGATCTGCAAGACATGTTCATAGTGCACAGCATAGAGGAGATAGAGAACCTGATTTCGGCCCATGACCAGTTCAAAGCGACGCTGCCCGAGGCAGATGTGGAGAGACAGGCCATCCTGAGCATCTACAACGAGGTGCAGAAAATCTCCCAGACTTACAACATCAATCCCAACCTCACCAACATATACTGCACCATCACCCCGACTGAGATCAACCTCAAATGGGacaaggtgaAAACGCTGGTCCCTCAGAGGGATACTGCGTTACGGGATGAGTTATCCAGGCAGCAAATGAACGAGCGCCTCAGAAGGCAGTTTGCGGCCCAGGCCAACGCGATCGGACCCTGGATACAGGCGCGCATGGAGgagaTTGCAAGCTGCTCTGTGGATGCAGGCGGCACTTTGGAGGATCAGATGAATCAGCTGAAGCAGTGTGAGGGTATGATCATCAACTACAAGCCCAACATCGACAAGCTGGAGGGAGATCACCAGTTTATCCAGGAGTCACTCATATTTGACAACAAACACACCAACTACACCATGGAGCATATTCGTGTTGGATGGGAGCACCTCCTGACGACTGTGGCTCGCACCATCAATGAGATCGAGACTCAGATCCTGACCCGCGACGCCAAGGGCATCAGTCAGCAACAGCTCACCGAGTTTCGCTCATCCTTCAGACACTTTGACAGGAGTAACCTTGGGCAAGTTCGTTCCACTGATTAAAAGCTTGTCTGAACCTAACAGGAAACACTATAGGAGAAGAAGAAAGGAGGAATGGACACAGATGAATTCCGTGCATGTCTCAT

Function

NR:

description
PREDICTED: alpha-actinin-3

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K21073 ACTN2_3; actinin alpha 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915803.2 True 3824 mRNA 0.47 21 20258874 20288139
XM_026915804.2 False 2576 mRNA 0.52 20 20258874 20285575

Neighbor

gene id symbol gene type direction distance location
LOC113527333 LOC108273935 coding upstream 29877 20202594 ~ 20228997 (+)
LOC113527727 LOC108274321 coding upstream 58602 20186805 ~ 20200272 (+)
gpx9 LOC108273566,LOC108439462 coding upstream 241370 20012707 ~ 20017504 (+)
mrpl38 mrpl38 coding upstream 387471 19863312 ~ 19871403 (+)
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding upstream 405124 19845510 ~ 19853750 (+)
mtr mtr coding downstream 2454 20290593 ~ 20316556 (+)
ryr2a ryr2 coding downstream 31150 20319289 ~ 20500533 (+)
LOC113527089 chrm3 coding downstream 268452 20556591 ~ 20657465 (+)
fmn2b fmn2,fmn2b,LOC108413081,LOC107674408 coding downstream 375555 20663694 ~ 20753768 (+)
hhex hhex,LOC107597790,LOC104952083 coding downstream 624579 20912718 ~ 20918024 (+)
LOC113527335 NA non-coding upstream 7400 20234815 ~ 20251474 (+)
G199217 psd non-coding upstream 305566 19950787 ~ 19953308 (+)
G199216 NA non-coding upstream 314408 19944244 ~ 19944466 (+)
G199187 NA non-coding upstream 372886 19876741 ~ 19885988 (+)
G199161 trim65 non-coding upstream 402394 19792634 ~ 19856480 (+)
G199796 NA non-coding downstream 307102 20595241 ~ 20595444 (+)
G200325 NA non-coding downstream 1095937 21384076 ~ 21386033 (+)
G200418 NA non-coding downstream 1322115 21610254 ~ 21610457 (+)
G200420 NA non-coding downstream 1351555 21639694 ~ 21643654 (+)
G200430 NA non-coding downstream 1365092 21653231 ~ 21654736 (+)
LOC113527713 fam196a other upstream 692190 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 1446612 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1748715 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 2098788 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 2686809 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1169252 21457391 ~ 21500929 (+)
G200571 NA other downstream 1714685 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 1720372 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 1725667 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 2510003 22798142 ~ 22871284 (+)

Expression


Co-expression Network