LOC113527727 (LOC108274321)


Basic Information

Item Value
gene id LOC113527727
gene name LOC108274321
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20186805 ~ 20200272 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915810.2
TGATGAAAACATCGATTACAAAACGAGGTTGTTGTattgaaaaaaattgcagtACATGCATGCAAACATCTGAAGGTAGGTCAAACATCTGAAGGTAGGTCTGAAGGTAGGTCAAACATCTGAAGGTCGATAGTTTTGctcactttaaaaacaaatcaaatgtatcattttaataaagtctAAGGAgcgttttgtttcattttggcATGACTTTTCGGGTGTACCTACACTGTCAGTGTTTACATGCAGATATTCTCCAGCACGTATGAATTCAGTCCAATTGCATATTACGAATGTTTAGACTATATGCATCCTAAACTAGACACTGGAAACAATCTTCATTTATATGCACTTTGCATGCAATCCGATTCAAAGTTATTCGCATGGGTGGAGTAAGGTTTAGTGCCAGCTTTACCAAACAAACGTGCATTAAATGTTATGCAAGTGTGATTATTAAACAGACAGAGTTTGTGACCGCAGTAACGTTGTTCAGCATTTTGTATATATCCGACATTCAGGAGCAAGAACGCTCTGCTTGTTTAAAataaccaaatgcaaatagtCTTGTATGTGAACACTGATGGATGCTGTTGTCTGCTGTATCTCAGGATGGCTGCGGTGTTATTTGAGGGTTTGAAGGTCCTGCTGTCTCGGCTGCTGTGCGCGCGCGCACTGTCTGGTgcgctcggtgtgtgtgtgctcgcgcTCCTGGTGCTTTCGCCGCACGCCTCGCGCAGCTGCTGTGGAAACGCAAGAGCCTCTCCTGCTTCAGCTGTCCTCCACAACGCAACTGGTTTCCTGGGACACATGGGCATTATTCGGTCTGATGAAATGGGTCTTCAGGAGGTGGATGAGCTGATAAGGACGTACCGTCACTCCTGTGCCTGGTTCCTCGGCCCCTTTTATAACCTTGTGCGCTTTTTTCATCCTGACTACATCAAACCTTTGCTTCTTGCCTCTgcTTCCATTACATATAAAGATGAGCTGTTCTATGGGTTTATGAGACCTTGGCTTGgacAGGGGCTTCTGATAAGTAACGGAAAACAGTGGTCTCGTCAGCGTCGTCTTCTCACTCCGGCCTTCCACTTTGACATCCTGAAAAACTACATTCATATCTTCAACAGCTCCACCAACGTCATGCATGAGAAGTGGCGCCGCTTGctggcagaaagaaagaaagactttgACATGTTTGAACACGTGAGCTTGATGACTCTCGACAGCCTCCTGAAATGCACTTTCAGCTATGACAGCAACTGCCAAGAAAAATCCAGTGAGTACATCTCTGCCATTTATGAGCTGAGCGACTTGGTGGTGAAGAGGCAGCGCTGCCTCCCTCATCACTGGGGCTGGCTGTATAAGCACACTGCAGAAGGACAGCGTTTCCATCGGGCCTGCGAAATCGTCCACAACTTCACCACCAGCGTCATACAAGAACGCCGTACCCAATTCCTCCatcagggacagacagacagcaccACACAAACAGGCACGACAGGCAAGAAGAGGAGAGCAGTTGACTTTATAGAGGTGCTGCTTCTATCAAAGGATGAGAATGGAGAAGGCCTGTCAAATGAGGAGATTAAAGCACAAGCAGACACGTTCATGTTTGCAGgTCATGACACAACAGCGAGTGCAATTTCCTGGGTTCTGTATAATCTGGCCATGCACCAGGACTATCAAGACCGCTGTCGTTCCGAGATCAATGCTCTTCTTGAAGACCACGACACTGAGGAGCTCGTCTGGGAAGACCTCAGTAACCTGCCCTTCACCACCATGTGCATTAAGGAAAGTATGAGGCTTCATCCACCTGTGATTGCTTTAACCCGATACTACTCTCAAGATATGAATGTTCCTGGGGGACGCACCGTACCAGAGGGCGCTATCTGTCTGATCAGTGTTTATGGCACCCATCATAATCCAGATGTGTGGCCTAATCCAGAGGTGTTTGACCCCATGCGATTCGACCCTGACAACCAGAAACAACGCTCCCCATATGCTTTTATTCCCTTTTCTGCTGGACCAAGGAACTGTATCGGTCAGAACTTTGCCATGGCGGAGATCCGTGTGGTTCTGGCACTCACTCTAAGAAGATTCAGGGTTCTTCCAGGGTCCAGATCTCCAAGTCGTCTTTATGTGCTCACACTGAAAGCAGAGGGGGGGCTGCTTCTAACGCTAGAACCCCTGTCACCACCTCAAcgctgaaacacacacgcacatagaAACATAAATGGCTGTAGCCTAGTAGCATTTTACCACCTCACACACCAACAAATATGTGACCCtacattttgtcattattttcattGCTAAGTGAGCTGTACTGTAAGTGATCACAATGaatttg
>XM_034309635.1
ATGAAAACATCGATTACAAAACGAGGTTGTTGTattgaaaaaaattgcagtACATGCATGCAAACATCTGAAGGTAGGTCAAACATCTGAAGGTAGGTCTGAAGGATGGCTGCGGTGTTATTTGAGGGTTTGAAGGTCCTGCTGTCTCGGCTGCTGTGCGCGCGCGCACTGTCTGGTgcgctcggtgtgtgtgtgctcgcgcTCCTGGTGCTTTCGCCGCACGCCTCGCGCAGCTGCTGTGGAAACGCAAGAGCCTCTCCTGCTTCAGCTGTCCTCCACAACGCAACTGGTTTCCTGGGACACATGGGCATTATTCGGTCTGATGAAATGGGTCTTCAGGAGGTGGATGAGCTGATAAGGACGTACCGTCACTCCTGTGCCTGGTTCCTCGGCCCCTTTTATAACCTTGTGCGCTTTTTTCATCCTGACTACATCAAACCTTTGCTTCTTGCCTCTgcTTCCATTACATATAAAGATGAGCTGTTCTATGGGTTTATGAGACCTTGGCTTGgacAGGGGCTTCTGATAAGTAACGGAAAACAGTGGTCTCGTCAGCGTCGTCTTCTCACTCCGGCCTTCCACTTTGACATCCTGAAAAACTACATTCATATCTTCAACAGCTCCACCAACGTCATGCATGAGAAGTGGCGCCGCTTGctggcagaaagaaagaaagactttgACATGTTTGAACACGTGAGCTTGATGACTCTCGACAGCCTCCTGAAATGCACTTTCAGCTATGACAGCAACTGCCAAGAAAAATCCAGTGAGTACATCTCTGCCATTTATGAGCTGAGCGACTTGGTGGTGAAGAGGCAGCGCTGCCTCCCTCATCACTGGGGCTGGCTGTATAAGCACACTGCAGAAGGACAGCGTTTCCATCGGGCCTGCGAAATCGTCCACAACTTCACCACCAGCGTCATACAAGAACGCCGTACCCAATTCCTCCatcagggacagacagacagcaccACACAAACAGGCACGACAGGCAAGAAGAGGAGAGCAGTTGACTTTATAGAGGTGCTGCTTCTATCAAAGGATGAGAATGGAGAAGGCCTGTCAAATGAGGAGATTAAAGCACAAGCAGACACGTTCATGTTTGCAGgTCATGACACAACAGCGAGTGCAATTTCCTGGGTTCTGTATAATCTGGCCATGCACCAGGACTATCAAGACCGCTGTCGTTCCGAGATCAATGCTCTTCTTGAAGACCACGACACTGAGGAGCTCGTCTGGGAAGACCTCAGTAACCTGCCCTTCACCACCATGTGCATTAAGGAAAGTATGAGGCTTCATCCACCTGTGATTGCTTTAACCCGATACTACTCTCAAGATATGAATGTTCCTGGGGGACGCACCGTACCAGAGGGCGCTATCTGTCTGATCAGTGTTTATGGCACCCATCATAATCCAGATGTGTGGCCTAATCCAGAGGTGTTTGACCCCATGCGATTCGACCCTGACAACCAGAAACAACGCTCCCCATATGCTTTTATTCCCTTTTCTGCTGGACCAAGGAACTGTATCGGTCAGAACTTTGCCATGGCGGAGATCCGTGTGGTTCTGGCACTCACTCTAAGAAGATTCAGGGTTCTTCCAGGGTCCAGATCTCCAAGTCGTCTTTATGTGCTCACACTGAAAGCAGAGGGGGGGCTGCTTCTAACGCTAGAACCCCTGTCACCACCTCAAcgctga
>XM_034309636.1
ATGAAAAGCAGAATTTCTCTGATGAAAACATCGATTACAAAACGAGGTTGTTGTattgaaaaaaattgcagtACATGCATGCAAACATCTGAAGGTAGGTCAAACATCTGAAGGATGGCTGCGGTGTTATTTGAGGGTTTGAAGGTCCTGCTGTCTCGGCTGCTGTGCGCGCGCGCACTGTCTGGTgcgctcggtgtgtgtgtgctcgcgcTCCTGGTGCTTTCGCCGCACGCCTCGCGCAGCTGCTGTGGAAACGCAAGAGCCTCTCCTGCTTCAGCTGTCCTCCACAACGCAACTGGTTTCCTGGGACACATGGGCATTATTCGGTCTGATGAAATGGGTCTTCAGGAGGTGGATGAGCTGATAAGGACGTACCGTCACTCCTGTGCCTGGTTCCTCGGCCCCTTTTATAACCTTGTGCGCTTTTTTCATCCTGACTACATCAAACCTTTGCTTCTTGCCTCTgcTTCCATTACATATAAAGATGAGCTGTTCTATGGGTTTATGAGACCTTGGCTTGgacAGGGGCTTCTGATAAGTAACGGAAAACAGTGGTCTCGTCAGCGTCGTCTTCTCACTCCGGCCTTCCACTTTGACATCCTGAAAAACTACATTCATATCTTCAACAGCTCCACCAACGTCATGCATGAGAAGTGGCGCCGCTTGctggcagaaagaaagaaagactttgACATGTTTGAACACGTGAGCTTGATGACTCTCGACAGCCTCCTGAAATGCACTTTCAGCTATGACAGCAACTGCCAAGAAAAATCCAGTGAGTACATCTCTGCCATTTATGAGCTGAGCGACTTGGTGGTGAAGAGGCAGCGCTGCCTCCCTCATCACTGGGGCTGGCTGTATAAGCACACTGCAGAAGGACAGCGTTTCCATCGGGCCTGCGAAATCGTCCACAACTTCACCACCAGCGTCATACAAGAACGCCGTACCCAATTCCTCCatcagggacagacagacagcaccACACAAACAGGCACGACAGGCAAGAAGAGGAGAGCAGTTGACTTTATAGAGGTGCTGCTTCTATCAAAGGATGAGAATGGAGAAGGCCTGTCAAATGAGGAGATTAAAGCACAAGCAGACACGTTCATGTTTGCAGgTCATGACACAACAGCGAGTGCAATTTCCTGGGTTCTGTATAATCTGGCCATGCACCAGGACTATCAAGACCGCTGTCGTTCCGAGATCAATGCTCTTCTTGAAGACCACGACACTGAGGAGCTCGTCTGGGAAGACCTCAGTAACCTGCCCTTCACCACCATGTGCATTAAGGAAAGTATGAGGCTTCATCCACCTGTGATTGCTTTAACCCGATACTACTCTCAAGATATGAATGTTCCTGGGGGACGCACCGTACCAGAGGGCGCTATCTGTCTGATCAGTGTTTATGGCACCCATCATAATCCAGATGTGTGGCCTAATCCAGAGGTGTTTGACCCCATGCGATTCGACCCTGACAACCAGAAACAACGCTCCCCATATGCTTTTATTCCCTTTTCTGCTGGACCAAGGAACTGTATCGGTCAGAACTTTGCCATGGCGGAGATCCGTGTGGTTCTGGCACTCACTCTAAGAAGATTCAGGGTTCTTCCAGGGTCCAGATCTCCAAGTCGTCTTTATGTGCTCACACTGAAAGCAGAGGGGGGGCTGCTTCTAACGCTAGAACCCCTGTCACCACCTCAAcgctga

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17726 CYP4F2_3; phylloquinone omega-hydroxylase / docosahexaenoic acid omega-hydroxylase / leukotriene-B4 20-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915810.2 True 2347 mRNA 0.47 12 20186824 20200272
XM_034309635.1 False 1701 mRNA 0.50 13 20186826 20200130
XM_034309636.1 False 1710 mRNA 0.50 13 20186805 20200130

Neighbor

gene id symbol gene type direction distance location
gpx9 LOC108273566,LOC108439462 coding upstream 169301 20012707 ~ 20017504 (+)
mrpl38 mrpl38 coding upstream 315402 19863312 ~ 19871403 (+)
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding upstream 333055 19845510 ~ 19853750 (+)
dhx32a LOC108273822,LOC108429422 coding upstream 345779 19830602 ~ 19841026 (+)
LOC113527774 LOC108273823,LOC108429440 coding upstream 360927 19727671 ~ 19825878 (+)
LOC113527333 LOC108273935 coding downstream 2322 20202594 ~ 20228997 (+)
zgc:165653 LOC108274081,LOC108437900,LOC105888795 coding downstream 58602 20258874 ~ 20288139 (+)
mtr mtr coding downstream 90321 20290593 ~ 20316556 (+)
ryr2a ryr2 coding downstream 119017 20319289 ~ 20500533 (+)
LOC113527089 chrm3 coding downstream 356319 20556591 ~ 20657465 (+)
G199217 psd non-coding upstream 233497 19950787 ~ 19953308 (+)
G199216 NA non-coding upstream 242339 19944244 ~ 19944466 (+)
G199187 NA non-coding upstream 300817 19876741 ~ 19885988 (+)
G199161 trim65 non-coding upstream 330325 19792634 ~ 19856480 (+)
G199051 NA non-coding upstream 760210 19426380 ~ 19426595 (+)
LOC113527335 NA non-coding downstream 34543 20234815 ~ 20251474 (+)
G199796 NA non-coding downstream 394969 20595241 ~ 20595444 (+)
G200325 NA non-coding downstream 1183804 21384076 ~ 21386033 (+)
G200418 NA non-coding downstream 1409982 21610254 ~ 21610457 (+)
G200420 NA non-coding downstream 1439422 21639694 ~ 21643654 (+)
LOC113527713 fam196a other upstream 620121 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 1374543 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1676646 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 2026719 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 2614740 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1257119 21457391 ~ 21500929 (+)
G200571 NA other downstream 1802552 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 1808239 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 1813534 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 2597870 22798142 ~ 22871284 (+)

Expression


Co-expression Network