slc16a5a (slc16a5)


Basic Information

Item Value
gene id slc16a5a
gene name slc16a5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14560553 ~ 14570289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915812.2
CACATTACAGCTGCCCGCAGGATTTAAAGGGGCCGCGCCTGCTTTACTACTGCGCGCTATAAATCATCATCCACTTTCATTTACAGCCGTGGTCACGGAGGTGTTTGGTCATGGACGGTTCAGGGATCTGATCCGGTCAGATTGGTCAAGGCTAGGTGAAGACGATACCGCTCATATACCCGAGCAGAGAGGGATGTTCTTCAGCACAGAAACAGAATGACATCATGAGCAGACATGCAAACGTTTTTACTCCCTGAAGAGACCGTTGGGGAACTTGTGAAGATCAAAGGTGGTGtgtcacatgtgaaaatgtgtaacAGTGCATCTAAACCACCACTAAGACATCCTCAAAGCTTTTTGGCTCACATAGACTGAACAGGAGCAGTACATGATCACTGTCAGCTTGCAGAAATGGGAACTCGaatacatcatcatcagtcaGAAGAGTCATGTGATCCAGAGCTTGAGGAAGAAGACACAGTGACCCCGCTGGCTCAGGTACGTCCAGCGCACCTTGAGGCTCCTGATGGAGGATGGGGCTGGGTGGTGCTGGTGGCCACCATCTTAGTCCTAGCCCTGACCCTAGCCTTCCCGTCCTGCATAGGCATTTTCTACACCGACCTTCAGATTGAATTCAGTGCCAGCAACAGTGAGACATCCTGGGTGCCATCCATAATGACAGCAGTCCTACATGCTGGAGGGCCCTTATGCAGCATGTTAGTGGAACATTTCGGTTGCAGGGCAACAGTGATGATGGGGGGAGTCTTGAGCGGATTGGGGATGGCAGCCAGCTCCTTTACACATTCCATCATTGAGCTTTACATTACTGCAGGGATAATAACAGGTCTAGGTTTTTGTTTCAGCTTCCAGCCTGCAGTCACCATCCTTGGTCACTATTTTGTGCGCCGCCGTGCCTTCGCCAATGCCATGTCATCCACGGGCACAGCTCTGGGCCTGTGCGTACTGCCCTTCCTGGGACACTACCTACACAGTGAACTGGGCTGGAGGGGGAGTTTCCTTGTGCTGGGTGCTGTGTTGCtcaactgctgtgtgtgtggtgctgtcaTGAGGCCCCTGGagtcacagaaacacagagaagcCAAAGAAAAGAACAATGGCACCAAAGCTTTGGTTGAGAAAGGCTTTAAAGAACAGATGTGGGTGGCCTGGAAGAGCTTAACGTCCGCTTTCGGTCGCCACATGGCCTTTGACCTGTTTTGCAGTAACCAGCGCTTTCGTGTGTATGCACTTGGCATTACATGGATGATGCTGGGCTTTGTGGTGCCGTTGGTTTTCCTCGTTCCTTATGCTACAGAATACGGCATGGAGCAGAGTCGGGCTGCCCTGCTGCTATCCATCCTGGGCTTTATCAACATCTTTGTGCGGCCGCCCGCTGGCCTGCTCTTCAGCCTTTCCTGGTTCAAAGGCCGCCATGTTTACGTATTTTCAAGTGCATTGCTACTGAATGGACTGAGCAACAGCATCTGCTGTATTGCGCCCACATTTCCAGTACTCTTGGTTTACGTGCTGACTTACGGACTGTCCATGAGCGTGGTGGGCTCACTGATGTTCACTGTGCTCATGGACATAGTGGAGATGAGCCGCTTCCCCTCAGCACTTGGCCTGCTGGCTATCATGGAGAGCATCACGCTGCTGATTGGGCCGCCTCTAGCAGGCAGCCTTGTGGACAGCACTGGTCTGTACACATACATGTTCCTCGCCTGCAGTATCACAGTGGCCTTATCAGCTTTGTTTCTCATGGTGTCCTTCTACTGGCTGGACCGCCGTGACGCAGCAATTAAGGATGCGTCGCCTACTCAAGTGTCAACAGTTACACCTGAAGCcctcacagtgtgtgtaggggaaAAGGTCAAGGAACCTGCGATAGAAACTGAACGCAGCACAACTGTATGAACTGAGACCATTAATAATCAACATCTGTGTTCAATGAATGAGACATATGCACATAATTTGAATACAAATTGATTCCTTTTCAGGATTTATTGTTATATCTGGGGCATTTCACCAATGATATACACTTTAAGCTTGTTTAAAGATACATTGTTTGTTTGCCAGATGGTGAGGGTTATATTGCTTTACATTGCTAGATCAAGATGAGTCTTTGTGTGACACTATTATACATTTCCAAGCATGTTCGTTTGTATATGCTACTTTTACAGTACACTTGCCAGCATGGTCATATTAATGGCAATATGGATCTGAATCCATCTTTCAGATCACTAATGATCATATTGCCGTAGTTCTTCAGACACAGTTAATGCAGATGGTTTACTAttctttacactgtttacatgtttatttgtaTACTGCACTCATCCTGAAACATTGACAGTACTTTATACATTTTGCTTTAAGGTCTACACGTATGGAAATCAAATTTAGTTTTTGTACGTAGCACCATGGTTTGCTTTACATTATAAGGCTGTTACACATTTTATACCCTTATCATCTGCATCATAGTCAATCAGAGTAGACAAAGATAATGTCTCTTAGACATCTTCACATTACATTTCCTTTACATGGTGACTGAGCTGCATATTAGGAGCACAGCTCTAGTATTACAGCCGAACAGTTGCCAGAGTCAGACTGAGCGTGCTTCACTGTTAATGCCTTATCTAATGCTATCAGGGAATTGTACACAAATCAAGTGCTTTGAAGGAAAGTATTTATGTATTCCCAAAGCTGTTCATCTGCACTGTACACCAAAGGTCCTGCTGGTTCTATAGTgtatacataatatacacaatatactatatatactaatatatacatTGTAATATTGCTTGTATTGGTCCTGTTGCCATTGTGTAAAAATGAGGAAAGGGCTATGTATACTTCTATAGAGTGTACAAGGTTATTTGttatttagaaaatatactgtattcatTTCTTATatacaaatcaaataaatactgttttgtttaa

Function

symbol description
slc16a5 Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane.

NR:

description
monocarboxylate transporter 6-like

GO: NA

KEGG:

id description
K08182 SLC16A5; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915812.2 True 2946 mRNA 0.45 5 14560553 14570289

Neighbor

gene id symbol gene type direction distance location
kctd2 kctd2,LOC107727321,LOC108410512,LOC107666921,LOC107582756 coding upstream 1628 14547948 ~ 14558925 (+)
hexdc hexdc coding upstream 13677 14540500 ~ 14546876 (+)
ndst2b ndst2b,LOC108273828,LOC108410510,LOC107684097,LOC107755463,LOC107749844 coding upstream 114721 14394714 ~ 14445832 (+)
si:ch73-127m5.1 si:ch73-127m5.1,LOC108273477,LOC108410513,LOC107690930,LOC107755465,LOC107684096,LOC107749846 coding upstream 168801 14369710 ~ 14391752 (+)
syt15 LOC108273430 coding upstream 205947 14349833 ~ 14354606 (+)
tap2t LOC108273873 coding downstream 1304 14571593 ~ 14577671 (+)
acsf2 acsf2 coding downstream 16976 14587265 ~ 14609925 (+)
stxbp4 stxbp4 coding downstream 142041 14712330 ~ 14736267 (+)
hlfb LOC108273987 coding downstream 167967 14738256 ~ 14744868 (+)
ankfn1 ankfn1 coding downstream 185339 14755628 ~ 14823551 (+)
G196360 NA non-coding upstream 34470 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 222283 14337963 ~ 14338270 (+)
G196312 NA non-coding upstream 233193 14327102 ~ 14327360 (+)
LOC117598693 NA non-coding upstream 272727 14280234 ~ 14287826 (+)
G196307 NA non-coding upstream 296167 14264176 ~ 14264386 (+)
G196378 NA non-coding downstream 7617 14577906 ~ 14578458 (+)
G196386 NA non-coding downstream 27489 14597778 ~ 14601439 (+)
G196387 NA non-coding downstream 35014 14605303 ~ 14614657 (+)
G197174 NA non-coding downstream 697010 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 1134843 15705132 ~ 15714087 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 236272 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 526410 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1001468 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1538558 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2086570 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2285400 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2975504 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3584856 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3871597 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4235788 18806077 ~ 18812262 (+)

Expression


Co-expression Network