gprc5c (gprc5c)


Basic Information

Item Value
gene id gprc5c
gene name gprc5c
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18127999 ~ 18136358 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915815.2
acacgcgcgtCCCCCCGCCTCGTTAGTGAAGTAGCAGGTTCGCCACGACGCTATCAGTGAAGAGCAAGGCACGGCAGATTACAGCCCTGTTCGGACCAACACTTATGAAGatatgaagtgaaaaacaaaaagtggaGCATTTAGAAGAGTTTAAAATCTTTCTTTGTTCTCTGAGCCCTTTTTTATGTTCGCAATGTTCGATATTCTTTCACACACTGAACTAAAGTGACTGAAAAGGATATTAAACAGACGAGCAGAGCAGCTGAGCATTTCCTCTCTTCCCACAGCTACTCTCAAGTGATCTCAGCCATGGATTGCTTCACTACCAGATCCTTCTGGAACCTTCTACTTGCCCTGGTTTTTGTGCCTGGCTCGACAGGGGCACCACAGGGCTGTGGCTCGAACGTGAGCTCTCTATACTATAACCTCTGTGATCTTGGTGCAGTTTGGGGCATCGTGGTGGAGGCATTTGCCACCGCCGGAGTGTTGGTATGCCTCATATTGCTGATGGTTCTCCTTGCCAGCCTGCCTTTTATGTCAGATAACAGGCGGCGCAGGTCGGTACCTTTGGACGCTGGCTTACTTGTGGGCACTCTGGGCCTCTTTGGGCTCTCTTTTGCCTTCATCGTGGACAAGGACTTTTCCACATGTTCCTCACGCCGCTTCCTGTTTGGTGTATTGTTTGCAGCCTGCTTCTCCTGCCTTCTTATGAAAGCCATAAATCTGAACATCCTGTCCAGGCACAACAAGGCACCCCAACCCTGGGCACTATGCCTAGGAGCCTTGGCGCTTTGGTTGGTCGAAGTGATCATCAACACAGAATGGTTGATTATCACAGTGGTCCGCCAGCCCATTAATGTCACCTCTAGTCTGCCTGTGCCATGCTTGATTGCCAACGAAGACTTTGTAATGGCTCTCATTTATGTTATGGTCCTGCTGGTGGCTGTCTTTGTTGCATCCATACCAATCCTGTGTGGCGAGCACCAGCGCTGGCACAAGGACGGAGTCTTCATCCTGCTCACTGGAATGTTCTCACTGGGCATTTGGGTGGCGTGGATCGTCATGTACACTTACGGCAATGGCAAGCATGGCAGTCTTAAGTGGGATGACCCGACCCTCGCTATAGCACTGGTGGCCAATGCCTGGGTGTTCCTTCTGCTTTACTCAGTGCCTGAGCTGTGCCAGTTGACGGAAGACATAGAGGGGGTATCAACCCTCCCCACAGATGTCTATGCCAACCAAGGCGTGGGTTATGAGAACATCCTGAAAGAGCAAAGCTCCCAGAACATGTTTATGGAAAATAAGGCCTTCTCTATGGACGAACCCAAAGCAGGTAACAAGCCAGTGTCTCCATACAGCGGCTACAACGGGCAGATCCGCAGCTCTGTGTTCCAGCCCACAGAGCTCGCAATTATCACCAAAGGAGTGACAAATCACCAGGTGGACCATTTATTTGATACTTCGATCCCACGAGCCTCTCTCGCTTCTCCATCCAGTCAGAGCGGCAGCATCAGCCCGACCCTATCCGACATTGGACAGAAACCCGTCACTAATGGTAATGGCTTGCACTGGAAATCTCAGTGGTGAATCTAGCCAAGACTTCCTGCTCTGGATGCCTTACTCTGTTCTTTTTCTCAACAAAGTTTCATTATGTTTTCACCTCGGCCATGGATCTTTTCTCAGGCCAAACAAACTTAAAAGCTTCACTTTGGAATGGCTAGCTATCTGTTTGCCCAATAGAGACAATATATGGGCATTTTGTCCACAATGACACTGAATAAGAAATTCAGCCCAGGAGATGAGACTGTACAGATGGATGTAGGATATGCAGACTGTTCATGTATTACCCAGTGGCTGTCTTAGCTACTACAATACTATGCATTTacagaaaggagaaagaatGGATGATGAATGGTACTTGACTTTGATActtaataatgtgaaataatcaGCCTATTATTGGAttaatacactctcagaaaaaataGTAGCTGTACCTTtgcttgttgctggggtggtactcTCAAGAGTACATCTTTGGTACCTTTAGTGAGAGCCTGTATCTCTCACCTGGAAACATGGATGTAGTGGACCTTTAAAGTTGATTTAGGGAACATAAATCGACTGAAatctttaaaggtacactacacacaagaaaaaaatgcatattaaaggtacaaagtATCTACCCTTAATGGTACTACAAAGAAATGTACAGTTTAacaccttttttctgagagtgtatgtcTGAAAGTGTCACTCAACTGCTTCAAACAGTAATATTTAGGTAGCAAGAGCATTGCTATGGATGCACTACCATTAAATTAGAGGTACATCTCAGAAAAAAGGTACTAACCTGTTCATTTCATGGTACAAACTCTTGGTAAATCTTCTGTACTGTTAGGATATATCTTTCATCAAGTAAAGCTTaattaaggtacataattggaccttaagtaCCACCGTTGTATCCTGAGAGCGCATTTACTTTGTACCTTTATTGTACCTGCTTTTCTGATAGTGTAGCTTGCAGCAACATTTCTGTACAGTAGGTATCTTAtgattactgtatttttaatagtGCCTAATTGAATCAATGTTGTATTGTAAAGTTTTAATGCTAAAATGTGTTCAGTATTGCAACACATTATTCACAGAACTTTCACCAATGATTGTAATAATTCCAGGCAATAGACTGAACTGAATAATA
>XM_034309643.1
cgcacacgcgcgtCCCCCCGCCTCGTTAGTGAAGTAGCAGGTTCGCCACGACGCTATCAGTGAAGAGCAAGGCACGGCAGATTACAGCCCTGTTCGGACCAACACTTATGAAGatatgaagtgaaaaacaaaaagtggaGCATTTAGAAGAGTTTAAAATCTTTCTTTGTTCTCTGAGCCCTTTTTTATGTTCGCAATGTTCGATATTCTTTCACACACTGAACTAAAGTGACTGAAAAGGATATTAAACAGACGAGCAGAGCAGCTGAGCATTTCCTCTCTTCCCACAGCTACTCTCAAGTGATCTCAGCCATGGATTGCTTCACTACCAGATCCTTCTGGAACCTTCTACTTGCCCTGGTTTTTGTGCCTGGCTCGACAGGGGCACCACAGGGCTGTGGCTCGAACGTGAGCTCTCTATACTATAACCTCTGTGATCTTGGTGCAGTTTGGGGCATCGTGGTGGAGGCATTTGCCACCGCCGGAGTGTTGGTATGCCTCATATTGCTGATGGTTCTCCTTGCCAGCCTGCCTTTTATGTCAGATAACAGGCGGCGCAGGTCGGTACCTTTGGACGCTGGCTTACTTGTGGGCACTCTGGGCCTCTTTGGGCTCTCTTTTGCCTTCATCGTGGACAAGGACTTTTCCACATGTTCCTCACGCCGCTTCCTGTTTGGTGTATTGTTTGCAGCCTGCTTCTCCTGCCTTCTTATGAAAGCCATAAATCTGAACATCCTGTCCAGGCACAACAAGGCACCCCAACCCTGGGCACTATGCCTAGGAGCCTTGGCGCTTTGGTTGGTCGAAGTGATCATCAACACAGAATGGTTGATTATCACAGTGGTCCGCCAGCCCATTAATGTCACCTCTAGTCTGCCTGTGCCATGCTTGATTGCCAACGAAGACTTTGTAATGGCTCTCATTTATGTTATGGTCCTGCTGGTGGCTGTCTTTGTTGCATCCATACCAATCCTGTGTGGCGAGCACCAGCGCTGGCACAAGGACGGAGTCTTCATCCTGCTCACTGGAATGTTCTCACTGGGCATTTGGGTGGCGTGGATCGTCATGTACACTTACGGCAATGGCAAGCATGGCAGTCTTAAGTGGGATGACCCGACCCTCGCTATAGCACTGGTGGCCAATGCCTGGGTGTTCCTTCTGCTTTACTCAGTGCCTGAGCTGTGCCAGTTGACGGAAGACATAGAGGGGGTATCAACCCTCCCCACAGATGTCTATGCCAACCAAGGCGTGGGTTATGAGAACATCCTGAAAGAGCAAAGCTCCCAGAACATGTTTATGGAAAATAAGGCCTTCTCTATGGACGAACCCAAAGCAGGTAACAAGCCAGTGTCTCCATACAGCGGCTACAACGGGCAGATCCGCAGCTCTGTGTTCCAGCCCACAGAGCTCGCAATTATCACCAAAGGAGTGACAAATGGTAATGGCTTGCACTGGAAATCTCAGTGGTGAATCTAGCCAAGACTTCCTGCTCTGGATGCCTTACTCTGTTCTTTTTCTCAACAAAGTTTCATTATGTTTTCACCTCGGCCATGGATCTTTTCTCAGGCCAAACAAACTTAAAAGCTTCACTTTGGAATGGCTAGCTATCTGTTTGCCCAATAGAGACAATATATGGGCATTTTGTCCACAATGACACTGAATAAGAAATTCAGCCCAGGAGATGAGACTGTACAGATGGATGTAGGATATGCAGACTGTTCATGTATTACCCAGTGGCTGTCTTAGCTACTACAATACTATGCATTTacagaaaggagaaagaatGGATGATGAATGGTACTTGACTTTGATActtaataatgtgaaataatcaGCCTATTATTGGAttaatacactctcagaaaaaataGTAGCTGTACCTTtgcttgttgctggggtggtactcTCAAGAGTACATCTTTGGTACCTTTAGTGAGAGCCTGTATCTCTCACCTGGAAACATGGATGTAGTGGACCTTTAAAGTTGATTTAGGGAACATAAATCGACTGAAatctttaaaggtacactacacacaagaaaaaaatgcatattaaaggtacaaagtATCTACCCTTAATGGTACTACAAAGAAATGTACAGTTTAacaccttttttctgagagtgtatgtcTGAAAGTGTCACTCAACTGCTTCAAACAGTAATATTTAGGTAGCAAGAGCATTGCTATGGATGCACTACCATTAAATTAGAGGTACATCTCAGAAAAAAGGTACTAACCTGTTCATTTCATGGTACAAACTCTTGGTAAATCTTCTGTACTGTTAGGATATATCTTTCATCAAGTAAAGCTTaattaaggtacataattggaccttaagtaCCACCGTTGTATCCTGAGAGCGCATTTACTTTGTACCTTTATTGTACCTGCTTTTCTGATAGTGTAGCTTGCAGCAACATTTCTGTACAGTAGGTATCTTAtgattactgtatttttaatagtGCCTAATTGAATCAATGTTGTATTGTAAAGTTTTAATGCTAAAATGTGTTCAGTATTGCAACACATTATTCACAGAACTTTCACCAATGATTGTAATAATTCCAGGCAATAGACTGAACTGAATAATA

Function

symbol description
gprc5c Predicted to enable protein kinase activator activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in extracellular exosome; intracellular membrane-bounded organelle; and plasma membrane. Orthologous to human GPRC5C (G protein-coupled receptor class C group 5 member C).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04620 GPRC5C; G protein-coupled receptor family C group 5 member C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915815.2 True 2710 mRNA 0.45 5 18128002 18136358
XM_034309643.1 False 2593 mRNA 0.44 4 18127999 18136358

Neighbor

gene id symbol gene type direction distance location
itln3 itln2 coding upstream 1696 18123157 ~ 18126303 (+)
gpr142 LOC108274175,LOC103030394,LOC108429827,LOC107690947,LOC107755455 coding upstream 7948 18109639 ~ 18120051 (+)
mmrn2b LOC108273952 coding upstream 249717 17868862 ~ 17878282 (+)
glud1b glud1b,LOC108273953,LOC107700126,LOC107739271,LOC107698813,LOC108430434,LOC107749346,LOC107550058 coding upstream 277141 17832805 ~ 17850858 (+)
epas1a LOC108273968 coding upstream 305709 17796028 ~ 17822290 (+)
oxld1 NA coding downstream 14133 18150491 ~ 18153090 (+)
nploc4 nploc4,LOC107561846,LOC107684105,LOC107690944,LOC107755457,LOC107601397 coding downstream 31456 18167814 ~ 18179057 (+)
rnf213b LOC108273713 coding downstream 48980 18185338 ~ 18226812 (+)
cep131 cep131,LOC107755458,LOC107690939 coding downstream 91024 18227382 ~ 18254419 (+)
LOC113527195 NA coding downstream 122613 18258971 ~ 18271510 (+)
G198213 NA non-coding upstream 142531 17985163 ~ 17985468 (+)
G198177 NA non-coding upstream 190228 17937532 ~ 17937771 (+)
G198174 NA non-coding upstream 193629 17934030 ~ 17934370 (+)
G198170 ldb3,ldb3b,LOC108274368,LOC107749342,LOC107552745 non-coding upstream 209404 17915426 ~ 17918595 (+)
G198158 NA non-coding upstream 215476 17863539 ~ 17912523 (+)
G198279 NA non-coding downstream 1793 18138151 ~ 18139043 (+)
G198282 NA non-coding downstream 25316 18161674 ~ 18177516 (+)
LOC117598699 NA non-coding downstream 26360 18162718 ~ 18167376 (+)
G198311 NA non-coding downstream 212606 18348964 ~ 18349413 (+)
G198722 NA non-coding downstream 281725 18418083 ~ 18419984 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 555934 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 1264504 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3803718 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 4093856 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4568914 13483301 ~ 13559085 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 18787 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 305528 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 669719 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1390284 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3321033 21457391 ~ 21500929 (+)

Expression


Co-expression Network