kcnj2a (kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237)


Basic Information

Item Value
gene id kcnj2a
gene name kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21783029 ~ 21790227 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915823.2
TCTCATTGGCTGGATGTGAACCGGGGGCGGAGTGGACCGGTTGTGTTCTATTTAAATGGTTTTGGGAGCACAGACTGACGAACACATGAGTGTAAGCGCGTGTCAGGATCCGGCTGAGCACGTGGGCgtgtttagtttattttatagtaaaataatccgCGTTTTATACACAGATGCAGCGGACATCAACGTGGAAAGCGTCACGTCTCCTTGGATATACCGTGTAGAAtgttttggttgttgttgttgtttttttgactTTTGACTACCAATGACCATCAGgaCAATTCATTGATGAGAACGAAGGAGCAGATGAGAGCAGAGTGATCAGCGCACACTAGGCCCTGCAGACCTTTCTGTCAATCGAAAGGTCTAACTGGAGCAGAGTGACGCCTGTTGCGTCCGGCTGTAAACAGTCCCACCATTTCCTTCTTGTGTTGGTTTCCGTGAGCGTTTCAAAACTGTTTCTCCAACGCTTCTTCCAGAAACTCAGACTGTTTTCCAAAGCAGAAGCAGCACAGCCCTCCCAGACAGAGGTGATGGGAAGTGTGCGGGCTAACCGCTACAGCATTGTGTCATCAGAGGAGGACGGCATGAAGTTGGCCACTATGGCGGTGCAGAACGGCTATGGAAACGGGAAGAGCAAGGTGCACACTCGGCATCAGCCCCAGAGCAGGTTCGTCAAGAAGGATGGACACTGCAATGTACAGTTCATCAATGTCAGTGAGAAGGGTCAGCGCTATTTGGCTGACATTTTTACCACTTGTGTGGACATTCGCTGGCGCTGGATGCTTATCATCTTCTGCTTGGCATTCCTGCTCTCGTGGCTGTTCTTCGGATGTATCTTCTGGCTGGTGGCCATCTTCCACGGAGACCTGGAAGGCAACAGCCCGAAATGTGTGTCGAATGTGAGCAGCTTTACtgcagcttttcttttctccatcgAGACGCAGACCACCATTGGCTATGGCTACCGCTATGTGACAGATGAGTGTCCCATTGCCGTCTTCATGGTGGTCTTTCAGAGCATCGTGGGCTGCATCATTGATGCTTTCATCATCGGTGCAGTCATGGCCAAGATGGCCAAGCCTAAGAAGCGAAACGAGACATTGGTGTTCAGCCACAATGCTACCGTGGCCATGAGGGACAACAAGCTGTGTTTAATGTGGAGGGTTGGCAACTTGCGCAAGAGCCATCTGGTAGAGGCCCATGTTCGGGCTCAGCTCCTTAGGTCCCGTACTACAGCAGAGGGGGAATACATCCCCCTGGACCAAATAGACATTGATGTTGGATTTGATAGTGGCATTGACCGTATCTTCTTGGTTTCTCCAATAACCATCGTCCACGAGATTGACGAGGACAGCCCATTTTATGACATGAGCAAGCAGGAGCTAGACAGTTCAGAGTTTGAGATTGTGGTGATCTTGGAAGGTATGGTGGAAGCAACAGCCATGACAACTCAGTGCCGTAGCTCATATCTGGCCAGCGAGATCCTCTGGGGCCACCGCTTTGAGCCAGTCCTGTTCGAGGAGAAGAACTACTACAAAGTGGACTATTCGCGCTTTCACAAGACCTATGAGGTGCCCAGCACCCCGCTGTGCAGCGCCAGGGACCTTGCAGAGAAAAAATACATCCTTTCCAATTCCAATTCCTTCTGTTACGAGAATGAGGTGGTGCTTCCGAAcaaagaggagaaggaggaaggagaCGGGGGTGGACTGGTGCCcacgagcacacacactgacactggcTCAGACTCTGACCACAATCAAGCCAATGTTCCCTTAGAGTCACGGCCACTGAGGCGAGAATCAGAAATATGACTGTATAGGCCTCCTGTGAAAAGTTTAGTAATTGCCTGTTGATCAAATAGGCACATTGAGCTGAACTGAGGTCCTGAGGGGATGCAGACTTAAGCTGACGGTACAGCTGCAAGGAGAGGTTAAGAGATGAACTGAACAAGAGCGTTCATGATGAATATATCCAGTTTATAAAGAGGCATTGCACTGAAGATGAGTGCACATAAAGGGGTGGGTGGGTTTATCCAGTTATGCAACTCTACCTTTTAGACCATTGCTCTCCGATGGCACACAGTGGAGAGGATGTAACTGCTATGTAAAacttgaaaatatcaggcatgTCTTCCTGTGCATTTGTCCAGCAGTGGCCGATTGATACGAATAggctaaaaaaaagtgttttagtgATGCACGAATGATCTCAAATCATGTATTGCGGTTTATACGTATATGTtgtggagaaaaaacaaaactcttcCTGAGAataatgtgtgcatgtttacCTTAATTTATGCGTATTACATAGCCAAGCATCTCCGATGTAGAAAATCTTTACTTGCCAGATAGGGCAGTAACCTCACGAAAGCTTTACACCTGTTCAGTACAGACAGATGTAAGTATAGATAAATACCTGTGCTTATAGAGTCCTATCATGTCATATAGATATACAGAAGTCCAATTTTTAACATAAGAATGATGAACATTGGCTAAtctattatttaatgtattacCGTTTCTACCAACTCTTGTTAGCATGATTCCAAAGGCCTCACCTGGGGTCAAAAGTATCCCTGAAATAGTCCTGTTGGGGACTTCTgatttagatgtgtgtgtgtgtgacctgtggCCACAATACAAACAGTTTACTTGCTATTAATGTAACGAGTAGTTTGCTCTGCGTGGGTCATTTGGGCTTAATTGCAGGCTTGGCAGCAGGCTCAGGAGCTGGGGGAAATGCAAGGAACATGCCTGTTTACAGTGGTAACTCCCACAGGGTCAGACCGGTGTCAAAGCCAGACACAGCAGTCATCCCATCCACTggggaagagagagtgagaatgcGCTAATGAATGTTTTTCCATACATGCTGCTATGTTGCATCTTATAATAGGGTTCTGGAGAAGACTGAAATATTCTAAAGAGTATTCTAAACAAGgcatcaaattattttaaagaaattagaTGTAGGACTATagtacaaatttttttttaatattttgatgggattttggttttgtttgttcatcattaaacatgCTTATTTTatcagatatttttttcatatacaaagccaaatgtttttaaaggaaaatatcaCAGAGATCATAAGAAATAAGAAGGCTACAGGGTAGCCTCTTTGAAAAACTCCTTATCCCCTAAACATcagtgttattatattatattatattatattatattatattattagtgCTGCATAAGTAAGTGTTCCAAGGTTGCTAGAAATGTGTAGATTTGCATACAAGCAACTTGTAtgaattcaaaatatatttttttacaacaaAACCTAAATGTTCAATATGTAAAACTGCACTGTATTATGGCCTTGAGATTTAAGGTAGCTAATCTTTGTAGAATTGGATAGAAACAGCACTGTTATAGATGTTCTTACCCCTacagtgtttagtttttttttttcatgacatttTAGACAGCACTAAGGTCTAGCTTTACCTGAGGAACTGCAGTTCAACCCTAATGGCTCATTTACTACATGCGCTGGGTCGTTGAAACCTGTAGGACTGAGTAATTAGACCAAGATTACGTCACCAGcactgagctcaggatggatCATGACCTGAGATTTCATGTTATCAGCCGATGTCATGCTAACAAACCAGCCTCTCTCCATGTCAGGAAGTTTTATAGCAGAGCAAATATTCTCCAATGCTCTCTAAATGGAGATAATAATATTCAGATCAACAAATGGttgcttaaaataaagctttacaCTCAAAAAGCGTACAAATCAACAAGAATCGGTATCTGCTTTTGTGTTAGCTTTGCGTTAGGTTGggtatttttttacatttgtttttttttaatattattattatttctgtgcaTTTATCTGAAAAAACATCACTAGGTTATTTGCCAGAATCAATAGGCCTAATGAATACTGACCTATCAAACTGAAGAAGCCCTTCTCAATGACTGAtggtctgtgtgcagtttctcCTTGGTTTGTAAATATCCCAGTACTTTTTGCAGTCTGTTTTTTCTATCAGTCTTCCTTGTACTGCAAAAAACAATGGAATGTACAGATTTTTATAT

Function

symbol description
kcnj2 Enables identical protein binding activity; phosphatidylinositol-4,5-bisphosphate binding activity; and voltage-gated potassium channel activity. Involved in several processes, including cardiac muscle cell action potential; potassium ion import across plasma membrane; and protein homotetramerization. Is intrinsic component of membrane. Part of voltage-gated potassium channel complex. Implicated in Andersen-Tawil syndrome; familial atrial fibrillation; familial periodic paralysis; and short QT syndrome. Biomarker of atrial fibrillation.

NR:

description
PREDICTED: inward rectifier potassium channel 2

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG:

id description
K04996 KCNJ2, KIR2.1; potassium inwardly-rectifying channel subfamily J member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915823.2 True 4094 mRNA 0.43 2 21783029 21790227

Neighbor

gene id symbol gene type direction distance location
kcnj16 LOC108274207 coding upstream 5198 21753341 ~ 21777831 (+)
unc13d unc13d,LOC107753247,LOC107597824,LOC107755420,LOC107704240,LOC107561838 coding upstream 143445 21612958 ~ 21639584 (+)
pmp22b pmp22,LOC107561836,LOC107692454,LOC107753252,LOC107684480,LOC107597829 coding upstream 630103 21139857 ~ 21152926 (+)
tekt3 tekt3,LOC107753251,LOC107684491 coding upstream 662076 21112476 ~ 21120953 (+)
LOC113527122 NA coding upstream 713565 21062462 ~ 21069464 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding downstream 146188 21936415 ~ 21959218 (+)
nat9 nat9 coding downstream 170891 21961118 ~ 21966747 (+)
LOC113527221 NA coding downstream 238862 22029089 ~ 22035625 (+)
si:ch211-119c20.2 LOC108274060 coding downstream 247745 22037972 ~ 22089270 (+)
LOC113527624 NA coding downstream 334109 22124336 ~ 22126646 (+)
G200430 NA non-coding upstream 128293 21653231 ~ 21654736 (+)
G200420 NA non-coding upstream 139375 21639694 ~ 21643654 (+)
G200418 NA non-coding upstream 172572 21610254 ~ 21610457 (+)
G200325 NA non-coding upstream 396996 21384076 ~ 21386033 (+)
G199796 NA non-coding upstream 1187585 20595241 ~ 20595444 (+)
G200555 NA non-coding downstream 184002 21974229 ~ 21978282 (+)
G200556 NA non-coding downstream 188856 21979083 ~ 21979381 (+)
G200559 NA non-coding downstream 196135 21986362 ~ 21987001 (+)
G200560 NA non-coding downstream 197293 21987520 ~ 21987869 (+)
G200561 rnf157 non-coding downstream 197959 21988186 ~ 21988754 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 282100 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2216345 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 2970767 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 3272870 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 3622943 18155145 ~ 18160086 (+)
G200571 NA other downstream 212597 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 218284 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 223579 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 1007915 22798142 ~ 22871284 (+)
G201154 NA other downstream 1415439 23205666 ~ 23206379 (+)

Expression


Co-expression Network