nif3l1 (nif3l1)


Basic Information

Item Value
gene id nif3l1
gene name nif3l1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5477331 ~ 5484677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915824.2
tacaaaatgtttattcGTCCAATCAGAGTTGGCGTTGTTTAAAAGCCCCGCCCACCCACCGGAAGTGTTAGCAGTGTCACTGCTGGAGCTGACTTCATCCATGTTTACTAGGTCTACGAACATCTCGAGGAGATTCTTCAGGTTGAGCTGCAGCCCGTCTCGGTTTAATGTCATCTCGAACACTGCCCTCAAAAGAAAACCCCACTTCCTGAGAGCAGCCTCTGCAACATTCAATCATTCATCCTGTCTTTATTCCGTGCTGCATTCTTCCATTTGTCATCCATTTTGCACCCCGCCGTTCGTTCTTTCTTCTCGTCCTTACTCTCATCCTCCTTCTTCCATGGATTTAAAGACAGTCCTGGAAGTTCTTGAGCAGCTTGCTCCACTCTCATTGGCTGAATCTTGGGATAATGTTGGTCTCTTGGTGGAACCGAGCAAACAGCGTCCAGTCAAGACGATCCTCCTCACCAATGATCTGACCGCTGACGTTATGGATGAAGCTGAAGGGATGACATGTGACCTCATCATTTCATATCACCCACCTCTTTTCCGGCCTTTCAAACGACTCATTCAGAAAGACTGGAAACAGCAGTTGGCCATCAGAGCTATAGAAAGTGGGGTAGCTGTCTTCTCACCGCATACGTCCTGGGATAGCGTGAAAGGCGGCCTTAATGATTGGTTGATAGAAGGCGTAGGTAGTGGACAAGTGTTGGTGCTAAGCCAGGCTCTCTGTAGTGCCCACAAAAAGCACAGATTGGAGTTTACAGCCAGAAATGAAGAGGAGCTCAATAATATCGTGAAGGAcatgagaaagacagaaaacagcGAAACCTTTCAGTACAATATACTTAGGACTGAACAAGAGGCACAGCATGTGATCCTGAACTGTCCCAGCTCAGAACTGACCTCTGCTGTTCAGGCGATATCAGGAAACGCCACAGCCAGCCAGACTCTCACCATCACGCAGGTCCAGCAGCCCCCTTTACTCGGCTGTGGTCAAGGACGGCATGCTGTGTTGGATGAGCCGATATCCATAGCTGTGGCACTCCAGAGAATGAAGAAACACCTCGGTCTGCCTCACCTTAGACTGGCTCTGGGAAATCAGAAAACATTAGATTCTGTTGTGAAGAgtgtagctgtgtgtgctgGCTCAGGAGCTTCAGTCCTGCAGGGCGTGAAAGCAGACCTCTACATCACCGgtgaGATGTCCCATCACGAGGTGCTGGATGCTGTTTCTAAAGGCACGAGTGTGATTCTGAGTGAGCACAGTAACAGCGAGAGGGGTTTTCTCACTGTGTTTAAGGAGCGGCTATCTGCACACCTACCAGACTCTGTTACCGTAATTATCTCCCAAAAAGACAAAGACCCGCTGCAGGTCATGTGATGTCATTATCTCACgctcattattacattatataacattaaagTTACTCTGCTGAAGTACCAAATCATTGCACCTTTTCAGATATTTAACATTGGATTTCtgaatgatttaaaaagaataaacgTGATCACTATGCAACACTG
>XM_026915825.2
TGGCTGTAAACAAATAGGGTTTATCTGTAATACTAGTGTGCATCCATTTTGTGCGCGAAACAGTCTAATTAGCACTAGCTTTTTGTAAAGCTAATGTAAGGCTTGCTAACGGAAGTGTGTTAGCTCGCGAGCTGCCTAAAGCTGACTTCATCCATGTTTACTAGGTCTACGAACATCTCGAGGAGATTCTTCAGGTTGAGCTGCAGCCCGTCTCGGTTTAATGTCATCTCGAACACTGCCCTCAAAAGAAAACCCCACTTCCTGAGAGCAGCCTCTGCAACATTCAATCATTCATCCTGTCTTTATTCCGTGCTGCATTCTTCCATTTGTCATCCATTTTGCACCCCGCCGTTCGTTCTTTCTTCTCGTCCTTACTCTCATCCTCCTTCTTCCATGGATTTAAAGACAGTCCTGGAAGTTCTTGAGCAGCTTGCTCCACTCTCATTGGCTGAATCTTGGGATAATGTTGGTCTCTTGGTGGAACCGAGCAAACAGCGTCCAGTCAAGACGATCCTCCTCACCAATGATCTGACCGCTGACGTTATGGATGAAGCTGAAGGGATGACATGTGACCTCATCATTTCATATCACCCACCTCTTTTCCGGCCTTTCAAACGACTCATTCAGAAAGACTGGAAACAGCAGTTGGCCATCAGAGCTATAGAAAGTGGGGTAGCTGTCTTCTCACCGCATACGTCCTGGGATAGCGTGAAAGGCGGCCTTAATGATTGGTTGATAGAAGGCGTAGGTAGTGGACAAGTGTTGGTGCTAAGCCAGGCTCTCTGTAGTGCCCACAAAAAGCACAGATTGGAGTTTACAGCCAGAAATGAAGAGGAGCTCAATAATATCGTGAAGGAcatgagaaagacagaaaacagcGAAACCTTTCAGTACAATATACTTAGGACTGAACAAGAGGCACAGCATGTGATCCTGAACTGTCCCAGCTCAGAACTGACCTCTGCTGTTCAGGCGATATCAGGAAACGCCACAGCCAGCCAGACTCTCACCATCACGCAGGTCCAGCAGCCCCCTTTACTCGGCTGTGGTCAAGGACGGCATGCTGTGTTGGATGAGCCGATATCCATAGCTGTGGCACTCCAGAGAATGAAGAAACACCTCGGTCTGCCTCACCTTAGACTGGCTCTGGGAAATCAGAAAACATTAGATTCTGTTGTGAAGAgtgtagctgtgtgtgctgGCTCAGGAGCTTCAGTCCTGCAGGGCGTGAAAGCAGACCTCTACATCACCGgtgaGATGTCCCATCACGAGGTGCTGGATGCTGTTTCTAAAGGCACGAGTGTGATTCTGAGTGAGCACAGTAACAGCGAGAGGGGTTTTCTCACTGTGTTTAAGGAGCGGCTATCTGCACACCTACCAGACTCTGTTACCGTAATTATCTCCCAAAAAGACAAAGACCCGCTGCAGGTCATGTGATGTCATTATCTCACgctcattattacattatataacattaaagTTACTCTGCTGAAGTACCAAATCATTGCACCTTTTCAGATATTTAACATTGGATTTCtgaatgatttaaaaagaataaacgTGATCACTATGCAACACTG
>XM_034309633.1
TGTAGATTTACAACGTGTATTGGTCAGTCCTGCAGCTGTTagttttacaaaatataaacacagtgatcATTTTGTAGTAAGCTAGTTTCATATAATAGCATAGAAATGCAATGAAATAAACTGCATTATACTAGCTGACTTCATCCATGTTTACTAGGTCTACGAACATCTCGAGGAGATTCTTCAGGTTGAGCTGCAGCCCGTCTCGGTTTAATGTCATCTCGAACACTGCCCTCAAAAGAAAACCCCACTTCCTGAGAGCAGCCTCTGCAACATTCAATCATTCATCCTGTCTTTATTCCGTGCTGCATTCTTCCATTTGTCATCCATTTTGCACCCCGCCGTTCGTTCTTTCTTCTCGTCCTTACTCTCATCCTCCTTCTTCCATGGATTTAAAGACAGTCCTGGAAGTTCTTGAGCAGCTTGCTCCACTCTCATTGGCTGAATCTTGGGATAATGTTGGTCTCTTGGTGGAACCGAGCAAACAGCGTCCAGTCAAGACGATCCTCCTCACCAATGATCTGACCGCTGACGTTATGGATGAAGCTGAAGGGATGACATGTGACCTCATCATTTCATATCACCCACCTCTTTTCCGGCCTTTCAAACGACTCATTCAGAAAGACTGGAAACAGCAGTTGGCCATCAGAGCTATAGAAAGTGGGGTAGCTGTCTTCTCACCGCATACGTCCTGGGATAGCGTGAAAGGCGGCCTTAATGATTGGTTGATAGAAGGCGTAGGTAGTGGACAAGTGTTGGTGCTAAGCCAGGCTCTCTGTAGTGCCCACAAAAAGCACAGATTGGAGTTTACAGCCAGAAATGAAGAGGAGCTCAATAATATCGTGAAGGAcatgagaaagacagaaaacagcGAAACCTTTCAGTACAATATACTTAGGACTGAACAAGAGGCACAGCATGTGATCCTGAACTGTCCCAGCTCAGAACTGACCTCTGCTGTTCAGGCGATATCAGGAAACGCCACAGCCAGCCAGACTCTCACCATCACGCAGGTCCAGCAGCCCCCTTTACTCGGCTGTGGTCAAGGACGGCATGCTGTGTTGGATGAGCCGATATCCATAGCTGTGGCACTCCAGAGAATGAAGAAACACCTCGGTCTGCCTCACCTTAGACTGGCTCTGGGAAATCAGAAAACATTAGATTCTGTTGTGAAGAgtgtagctgtgtgtgctgGCTCAGGAGCTTCAGTCCTGCAGGGCGTGAAAGCAGACCTCTACATCACCGgtgaGATGTCCCATCACGAGGTGCTGGATGCTGTTTCTAAAGGCACGAGTGTGATTCTGAGTGAGCACAGTAACAGCGAGAGGGGTTTTCTCACTGTGTTTAAGGAGCGGCTATCTGCACACCTACCAGACTCTGTTACCGTAATTATCTCCCAAAAAGACAAAGACCCGCTGCAGGTCATGTGATGTCATTATCTCACgctcattattacattatataacattaaagTTACTCTGCTGAAGTACCAAATCATTGCACCTTTTCAGATATTTAACATTGGATTTCtgaatgatttaaaaagaataaacgTGATCACTATGCAACACTG

Function

symbol description
nif3l1 Predicted to be located in nucleus. Predicted to be active in mitochondrion. Orthologous to human NIF3L1 (NGG1 interacting factor 3 like 1).

NR:

description
NIF3-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915824.2 False 1527 mRNA 0.47 7 5477331 5484677
XM_026915825.2 True 1580 mRNA 0.47 7 5477475 5484677
XM_034309633.1 False 1573 mRNA 0.46 7 5477746 5484677

Neighbor

gene id symbol gene type direction distance location
cabp5a cabp5a,LOC108273649,LOC108425940,LOC107562016,LOC107708978,LOC107693687,LOC108246804 coding upstream 7223 5464205 ~ 5470108 (+)
dcxr dcxr coding upstream 33453 5436259 ~ 5443878 (+)
rfng rfng coding upstream 42852 5422799 ~ 5434479 (+)
col1a1b LOC108273947,LOC107708989,LOC107693674 coding upstream 72525 5383011 ~ 5404806 (+)
lsm12b lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 193181 5267793 ~ 5284150 (+)
tbx6 tbx6 coding downstream 10229 5494906 ~ 5499745 (+)
LOC113527309 LOC108274209,LOC108273638 coding downstream 141714 5626391 ~ 5665967 (+)
mapk7 mapk7 coding downstream 197364 5682041 ~ 5689581 (+)
mmp25b LOC108273420 coding downstream 262196 5746873 ~ 5766384 (+)
kansl1a LOC108274073 coding downstream 456272 5940949 ~ 5964560 (+)
G191273 NA non-coding upstream 94522 5382597 ~ 5382809 (+)
G191267 NA non-coding upstream 110973 5366136 ~ 5366358 (+)
G191266 NA non-coding upstream 113828 5363288 ~ 5363503 (+)
G191258 NA non-coding upstream 167957 5308219 ~ 5309374 (+)
G191032 NA non-coding upstream 194688 5269247 ~ 5282643 (+)
G191310 NA non-coding downstream 28014 5512691 ~ 5513155 (+)
G191375 NA non-coding downstream 112045 5596722 ~ 5667602 (+)
G191329 aldoa,aldoab,LOC107581735 non-coding downstream 129730 5614407 ~ 5619108 (+)
G191386 NA non-coding downstream 186337 5671014 ~ 5671252 (+)
G191387 NA non-coding downstream 187465 5672142 ~ 5672495 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 136768 5330042 ~ 5340563 (+)
gngt2b NA other upstream 172422 5303077 ~ 5304909 (+)
G190865 NA other upstream 637962 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 881302 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 1546888 3903347 ~ 3930443 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 245477 5730154 ~ 5740905 (+)
G191581 NA other downstream 485066 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 1240644 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 1338063 6822740 ~ 6836383 (+)
tfam tfam other downstream 1943868 7428545 ~ 7436372 (+)

Expression


Co-expression Network