ube2d1b (ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549)


Basic Information

Item Value
gene id ube2d1b
gene name ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7421966 ~ 7427834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915835.2
ACATGCACACGGAGTGTTGCGTGGTTTGGGATTTAACCCCCTCGATCCAGGAAGTAGAAGTTGCTCGAGTCTCGGTCTCATCATCTACACCAGCTTCTCTCAGGGAAACACAAAGTATTGTTAGCTCTTCTATAGCAATAAACTTGGACACATTAACCGCAGGCTTCTTGAGctgacttacacacacacacacacacacacacacacactcactcacacactccggTGCTATGGCGTTAAAAAGAATACAGAAGGAGCTTCAAGATTTGCAAAGGGACCCTCCTGCACAGTGCTCGGCTGGACCTGTTGGAGATGACCTGTTTCACTGGCAGGCAACAATAATGGGACCTACTGATAGTCCATACCAAGGAGGGGTCTTCTTCCTTACTATCCACTTTCCCACAGACTATCCCTTCAAGCCTCCAAAGGTAGCATTTACGACAAAAATTTATCACCCAAACATAAACAGTAATGGAAGCATTTGCTTGGACATCTTGAGGTCACAGTGGTCCCCAGCACTAACAGTTTCAAAAGttcTATTGTCCATATGCTCCTTGCTCTGTGACCCAAACCCTGACGACCCCTTAGTCCCAGACATAGCACACATCTACAAATCAGACAAAGAAAAatACAACAGACTAGCAAGAGAATGGACCCAAAAGTATGCAATGTGAAGACTTAATGGACATTTTTTAAGTCACAGATCACTGTCAATTCTagtatcataaaaaaaaaaaaaaagtacttaggttatattattaaacacat

Function

symbol description
ube2d1b Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).
ube2d1 Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase activity. Involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Located in cytoplasm. Part of ubiquitin ligase complex.

NR:

description
ubiquitin-conjugating enzyme E2 D1

GO:

id name namespace
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0085020 protein K6-linked ubiquitination biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0044314 protein K27-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915835.2 True 768 mRNA 0.43 7 7421966 7427834

Neighbor

gene id symbol gene type direction distance location
pcdh15b pcdh15b,pcdh15,LOC107695531,LOC107654051,LOC108273410,LOC108411428 coding downstream 189891 7047571 ~ 7232075 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding downstream 574000 6836437 ~ 6847966 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding downstream 655866 6756785 ~ 6766100 (-)
g6pca.1 LOC108274343 coding downstream 669234 6747052 ~ 6752732 (-)
kat7b kat7,LOC108443263,LOC107598609,LOC107739754,LOC107708935,LOC107654043 coding downstream 681384 6727581 ~ 6740582 (-)
zgc:171971 LOC108273425 coding upstream 7675 7435509 ~ 7442712 (-)
fam13c fam13c coding upstream 119229 7547063 ~ 7560750 (-)
slc16a9b slc16a9 coding upstream 146242 7574076 ~ 7579872 (-)
tmem26b tmem26 coding upstream 376686 7804520 ~ 7809766 (-)
egr2b egr2,egr2b,LOC107739063,LOC107596614,LOC107653961,LOC107596611,LOC107593522,LOC107745678 coding upstream 551722 7979556 ~ 7990069 (-)
G192385 NA non-coding downstream 109079 7228390 ~ 7312887 (-)
G192074 NA non-coding downstream 606531 6813165 ~ 6815435 (-)
G192075 sgms1 non-coding downstream 612208 6808205 ~ 6809758 (-)
G192062 NA non-coding downstream 621890 6799642 ~ 6800076 (-)
G192061 NA non-coding downstream 625460 6796111 ~ 6796506 (-)
G192437 NA non-coding upstream 753 7428587 ~ 7428883 (-)
G192545 NA non-coding upstream 201477 7629311 ~ 7630373 (-)
G192583 NA non-coding upstream 412529 7840363 ~ 7841460 (-)
G192584 NA non-coding upstream 413795 7841629 ~ 7841947 (-)
G192585 NA non-coding upstream 414226 7842060 ~ 7842634 (-)
ipmkb ipmk other downstream 3588 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 827576 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 1630696 5768528 ~ 5791270 (-)
G191430 NA other downstream 1808012 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 1931041 5484691 ~ 5490925 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 153516 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 173384 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 1419828 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 1940383 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 2087980 9515814 ~ 9515885 (-)

Expression


Co-expression Network