aldoab (aldoa,LOC107660454,LOC107708965,LOC107689930)


Basic Information

Item Value
gene id aldoab
gene name aldoa,LOC107660454,LOC107708965,LOC107689930
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5614430 ~ 5618990 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915836.2
TCATAATGCTAGATAAATACAGTGGTCACGCTGATTAGGAGGTGTCACGGGCAAAAGCCGGATCTTTTCCACTGCCCCTCtttatctcactctctctcagagAGTCCCTCCATTCCTTCAGCTGTCCTCTCGACTGGAAAGTCATAATGCCTCACGCATACCCATTCCTCAGCCCTGAGCAGAAGAAAGAGCTCAATGACATTGCTCTGAGGATTGTTGCGCCGGGTAAGGGAATCCTCGCTGCCGACGAATCCACAGGCAGCATAGCCAAACGCTTCCAGAGCATCAATGCCGAGAACACTGAGGAGAACCGGAGGCTCTACCGTCAACTGCTCTTCACTGCCGATGACCGTGTCAAGCCTTGCATTGGAGGAGTCATCTTCTTTCATGAAACCCTTTACCAGAAGACTGATGATGGCAAGCTCTTCCCTCAGCTCATCAAGGAGAGAGGCGCGGTAGTGGGCATCAAGGTTGACAAGGGCGTAGTTCCTCTGGCCGGAACTAATGGAGAGACCACCACTCAGGGTCTGGATGGCCTGTATGAGCGTTGTGCTCAGTACAAGAAGGATGGAGCTGATTTTGCCAAATGGCGTTGTGTGTTGAAGATTACCCCCACCACCCCCTCCAGTCTGGCCATCAAAGAAAATGCTAATGTGCTAGCACGCTATGCTAGCATCTGCCAGATGcatgGCATCGTGCCAATCGTGGAGCCTGAGATCTTACCTGATGGTGACCATGACCTGAAGAGGTGCCAGTATGTAACCGAGAAGGTTTTGGCAGCTGTTTACAAAGCCCTGTCTGAACACCATGTTTACCTTGAGGGCACTCTGCTCAAGCCTAACATGGTGACTGCTGGCCACTCCTGCTCTCACAAGTACACCCCCCAGGAGATTGCCATGGCCACTGTCACTGCCCTGCGCCGCACTGTGCCCCCTGCTGTTCCTGGTATTACTTTCCTCTCTGGAGGGCAGAGTGAGGAGGAGGCCACAGTCAACCTGAATGCCATAAACACATGCCCCCTGCACAAACCATGGGCACTCACCTTCTCTTATGGCCGTGCCCTACAGGCTTCAGCCCTCAAAGCCTGGGGAGGCAAGAAGGAGAATGGCAAGGCCTGCCAGGAGGAGTACATCAAGAGAGCCTTGGCCAACAGTGCAGCATGCATTGGTAAATATGAATCAACTGGTGAAaaaggagcagcagcaggagagTCCCTGTTTGTGGCAAATCATGCTTATTAAAGCACCATCTCCATTTAGGAAATAACTGGACTTCCAATGTTTCACCCTGCTCTCAGTGAGCATCCTCTTTTCTGTCCTCTAATTACTCTGTAGTATAGTAATAGGGGATGAGTGGTGTattgagagagtgagagaaactCATAAACTTTGTAGGTGTGAAAGACCTAAAAAATCTGCCTCCGTGTCCATGCTTTTTCCAAAGCCATAATTCAGCTGGAAAAATTCTCTGTTTTGTAGGTGTAAGACTTCTTTTTTCATATGATGATCCCACATGTTCTTGTCCTATAATAGCcaagaaataaataacttaCTCACCAA

Function

symbol description
aldoa Enables several functions, including fructose binding activity; fructose-bisphosphate aldolase activity; and identical protein binding activity. Involved in several processes, including binding activity of sperm to zona pellucida; fructose 1,6-bisphosphate metabolic process; and purine ribonucleotide metabolic process. Located in several cellular components, including actin cytoskeleton; extracellular exosome; and sperm head.

NR:

description
PREDICTED: fructose-bisphosphate aldolase A

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0043473 pigmentation biological_process
GO:0007409 axonogenesis biological_process
GO:0007420 brain development biological_process
GO:0001966 thigmotaxis biological_process
GO:0004332 fructose-bisphosphate aldolase activity molecular_function

KEGG:

id description
K01623 ALDO; fructose-bisphosphate aldolase, class I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915836.2 True 1559 mRNA 0.50 7 5614430 5618990

Neighbor

gene id symbol gene type direction distance location
si:ch211-180a12.2 LOC108273640 coding downstream 41541 5555957 ~ 5572889 (-)
LOC117598535 NA coding downstream 59523 5545841 ~ 5554907 (-)
si:ch211-136m16.8 NA coding downstream 68545 5540886 ~ 5545885 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding downstream 74704 5528649 ~ 5539726 (-)
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding downstream 88043 5512767 ~ 5526387 (-)
vkorc1 vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442 coding upstream 55734 5674724 ~ 5677961 (-)
zgc:92313 LOC108273548 coding upstream 73130 5692120 ~ 5709289 (-)
LOC113527266 LOC108441168 coding upstream 188830 5807820 ~ 5814472 (-)
LOC113527265 LOC108274106,LOC108441156 coding upstream 198702 5817692 ~ 5849431 (-)
irf3 LOC108273898 coding upstream 247951 5866941 ~ 5882707 (-)
G191424 NA non-coding downstream 129763 5482620 ~ 5484667 (-)
G191413 NA non-coding downstream 169263 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 227293 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 863553 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 947859 4666312 ~ 4666571 (-)
G191463 NA non-coding upstream 47183 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 48894 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 69604 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 120988 5739978 ~ 5740199 (-)
LOC113527731 NA non-coding upstream 316549 5935539 ~ 5938213 (-)
G191430 NA other downstream 476 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 123505 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 551012 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 661571 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 695453 4911734 ~ 4918977 (-)
LOC113527291 LOC108274042 other upstream 149538 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 927951 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1781010 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1962360 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1982228 7601218 ~ 7767512 (-)

Expression


Co-expression Network