mfsd13a (mfsd13a,LOC107565800,LOC107581593,LOC107690908,LOC107755491,LOC106579271)


Basic Information

Item Value
gene id mfsd13a
gene name mfsd13a,LOC107565800,LOC107581593,LOC107690908,LOC107755491,LOC106579271
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13826107 ~ 13836370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915837.2
GGAACAGaaactattaattattattaataatattttaacttGAAACTTGAGCTGAGTTTGAGTTTTTTCTCCTGGCAAGAATGTAgcgcagaagaagaagaagaaggagaagaagttGGATGGGGAGAAAGAGGAAGTGGATTAAAGATAAGGGAGAGGGTTTTATACGTCACTGATTTCCTCACCCACATCACACTTATTTTTCCATTACTATACACTGTTAAACATAATAAGAaacgggttttttttttactgtgttctTGTTTGTACCGCTCTGGCAGTAACAAAGACATTATCTACGCATGGATTCCCATCTAGGACAATGACCACATCCTGCTTGCCTTGTGGGTTGAGAGAAATTCTGCTGGTGGAGGAAAAGCAGAGGTAGTGCAGGAGAATGTAAAAAGAGATGGGAAACAGGGTGTGGAACTGTTGCCTGGGTGTCTCCACAGCTGTGCTGTATGGCTCCCTGGCCCTTTTTGTCTCCATTCTTCATAATGTCTTCCTGCTTTATTATGTGGACACTTTTGTGTCTGTTTACAAGATAGACAAACTTTCCTTCTGGGTGGGAGAGACTGTGTTCCTGATATGGAACAGCCTGAATGACCCTCTCTTTGGCTGGCTAAGTGACCGCTCCTTCCTTAGCACCCCTCAGTCTGGGTCTCAGATCTCTTCACCTGAGGTGGTTTTGAAACGCCTCCAGTCTCTCGCCAGGAATGGGCCGCTTTTTGCTCTTTCCTTTCTGGCCTTCTGGGTGGCCTGGGCCCACCCTGGTCTGCAGTTCCTCATCTGCCTGTGCCTTTACGATGGTTTCCTCACACTGGTGGACCTCAACCACAACGCCCTGCTGGCTGACCTGGCCGTGTCTGCAAACGAGCGCACAAGTCTGAACTTCTACAGCTCCCTGTTCAGTGCACTGGGCTCGCTCTCTGTCTTCCTATCCTACTCCTTCTGGGACAAAGAGGACTTTATGTCCTTCAGGTTTTTTTGTGTAGCGCTGACTGCCCTGTCAGTGCTGGGCTTTGCTGTGGTATCTCGAATTCTGTGCCGCAGGTTCCAAAGTGAGGTCCAATCACACAGGAATGGAGAAGGGGAATTGCTCAAAGAaTTGTCTGTTGGCCAGGCTCCTCTTGCTCAGACTGAGAAGCCCATCACACTTGGCGAGTATCTGAAGCAACTCTCCCGCCACAGAAATTTTATGTGGTTTGTTTCAATGAACCTGGTGCAGGTATTTCACTGCCACTTCAACAGCAACTTCTTCCCTCTGTTTCTTGAGCACCTCTTATCAGACCGCATCTCTGCCTCCACTGGCTCCTTTCTGCTGGGCATCTCTTACATAGCTCCTCATGTCAACAACCTTTACTTTCTGACATTATGCCAAAAACTGGGTGTCTACCGGGTTGTTCGTGGCCTCTTTCTTTTGAAACTGGTCCTTAGTATAGCAATGCTGCTAGCAGGAGCAGACCAAGTCTACCTGCTTTGCTTATTTATTGCAAGTAATCGAGTGTTTACTGAGGGGACCTGTAAGCTATTGAATTTGGTAATCACAGACCTGGTTGACGAGGACTTTGTGTTGAACCGGCGACAACAAGCAGCCTCTGCACTGCTGTTTGGTATGGTTGCTTTGGTAACAAAGCCTGGCCAGACCTTCGCTCCCCTTATTGGCACCTGGctgctgtgtgtatatacagGTTATGACATCTTTGAGAGGGGTCCTCTTAAAGACTCAGTGGCAGCTGTAGGTGTCTCGGGTACAGAGAGCTCTCTGCCACTGCGCCAGGGCTGCTTTTACCTACTGGTGTTTGTGCCCATCTCCTGTGCCCTGCTGCAACTACTGGCTTGGTCCCGCTTCACGCTCCACGGTCGCAGATTACGGGGCATTAAAGCCATGAGGCAGGGTGCTCAACACCTCATTGATGTGAAAGCCATCTAATACTGCCCACCCCATTCTGCACTGCCTCACACTGACTCAGGATGGAGGCTGGTATCGCTTATAAAAGGACTGTGTGACAATGAAATCTTAGTGAAACCAGCCTTATTTTCTTATGGTGATAAATCATCTGCAtgtctatatttataaattaaatgacTTAGGGACCAAATATGAACTGTTAAAACAATCATGTGGTGTGGGACCATATGGAAGAATAACATTTCTTCCCCTTTGACTGCACAATACAAGATTATAGTTGGGTACTGTAGCCCCTAGATTGAGCAGTGGTTTACCTACTAAGCTTTCatctttttctgtaaaaatcatAGGCTGTTTAcctatttattttgtatttttatagtgTGCTAATCTCATAATAAGCATTTTTTGGAGTACTCAGCAGTTCAGGTGCAGTGGATATAAACTACATGAGCTTCTCTGGAGTTTTCATTgattaatttacacaatttttttttttttttggttacagGAAATTATAGTGGTACACTAATTCTAGAAAGGTTTTATTCCCCTTCTCCCATTTGTTGTGTACTTTcttttcaaataataaaaaaatattttacgaagcattttacagtaattatcCCTGAGTATGATACAAGTTATACCAGTAAATCGCATTTGTAAAGATGAGAGtacttttgtatattttttatttaaaaactgctATTTTCAAATATGCTTAATTTTAAGGCATTGGCTGATTTATACAAATCATGTACTAACTTTCCAAAAATGGAAAATGACACTTTACAGTACtgtcattttgaatatttttcagtGAGTGATAATTAcctttttgatgttttttattgtttgttttgagttcaATGAGGTGGTTTGTAACTCAGGAAATTTAACATTactaatttaatgtttttgctgTTCTTGGTAATGGTTCATACATTCTTATCAGTGCTTGCAGAAAATAAACATACTTGTGTTGTTTCAATTATTAA

Function

symbol description
mfsd13a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MFSD13A (major facilitator superfamily domain containing 13A).

NR:

description
transmembrane protein 180-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915837.2 True 2913 mRNA 0.42 10 13826107 13836370

Neighbor

gene id symbol gene type direction distance location
mrpl43 mrpl43,LOC107722220,LOC107565786,LOC107581592 coding upstream 28457 13795093 ~ 13797650 (+)
psme4b psme4,psme4b,LOC108426507,LOC107584369,LOC107749369,LOC107686372 coding upstream 67574 13736448 ~ 13758533 (+)
entpd1 entpd1 coding upstream 170260 13640177 ~ 13655847 (+)
crygmx LOC108273487 coding upstream 208943 13614199 ~ 13617164 (+)
vti1a vti1a,LOC107702459,LOC107566351 coding upstream 364063 13355852 ~ 13462044 (+)
trim8b trim8,trim8b,LOC107581594,LOC107684075,LOC107565801 coding downstream 1038 13837408 ~ 13848679 (+)
sfxn2 sfxn2,LOC107755483,LOC107722238 coding downstream 25014 13861384 ~ 13871004 (+)
cyth1b LOC108274176,LOC108426518,LOC103022618,LOC107755486,LOC107690912 coding downstream 52139 13888509 ~ 13933419 (+)
LOC113527468 dnah17 coding downstream 97534 13933904 ~ 13974593 (+)
socs3b socs3b,LOC108274104,LOC108426520,LOC107755481,LOC107601442,LOC107690914,LOC107581599,LOC107684082,LOC107722230 coding downstream 155853 13992223 ~ 13996169 (+)
G195994 NA non-coding upstream 130346 13693715 ~ 13695761 (+)
G195857 NA non-coding upstream 207168 13618664 ~ 13618939 (+)
G195847 NA non-coding upstream 308221 13514676 ~ 13517886 (+)
G195839 NA non-coding upstream 359124 13466765 ~ 13466983 (+)
LOC113527319 NA non-coding upstream 759485 13063864 ~ 13066622 (+)
G196202 NA non-coding downstream 187217 14023587 ~ 14043932 (+)
G196265 NA non-coding downstream 290148 14126518 ~ 14127031 (+)
G196289 NA non-coding downstream 327201 14163571 ~ 14166015 (+)
G196292 NA non-coding downstream 332938 14169308 ~ 14169812 (+)
G196291 NA non-coding downstream 336920 14173290 ~ 14173773 (+)
tcf7l2 tcf7l2 other upstream 267022 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 804112 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1352124 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1740748 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 2204838 11613899 ~ 11621269 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 177203 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 450989 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3019319 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3709423 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 4318775 18155145 ~ 18160086 (+)

Expression


Co-expression Network