zdhhc16b (LOC108273908,LOC108444288)


Basic Information

Item Value
gene id zdhhc16b
gene name LOC108273908,LOC108444288
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4810652 ~ 4827352 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915838.2
TCACCATTCGCCAGAAAACACTAAAGAAGAacaagattttctttttttctttttttttgtttttcaagctATCAGAATTctacagtgttaaataaatttttattaaaatgcaatgaATATCAGCGCTGTGAACCGGACCGGTCCTGTAATTTCACGGTACCAGGAAGTGGATCAGGACATCATCGCTGGTACTGGAATGTTGCAGTCTCTGATCGCTGAAGATGGAAGATGTTTTCTTGCTTGCATTTAGATGAtctgatgacttttttttttaaatgattcagaCACCTTAAGTTTCCTTTTaatggaagaaaagaaataaaggcCAGgaagAGGGATGCATAGCTGGAGGTGTTATTTCTCAAGGCTCATGCGTCTCTCAGTGCGCTGGGTCCGCCTGTGTCCCCAGCAGAGCCAAGGCAAGCGGCCTGGCCCACTCCGGCAGTTATGGAGCTATGGAAAAGTCATTTTCAACTCTCTCTACTTCAACATCCTCACCAACTGGGATACGGTGCTTGACTCAATCTTTGAACCTGTTTACTGGTTGGTGGACAACCTGACCCGCTGGTTTGGGGTGgtgtttgtgtgtctggtGATTGCTCTCACCAGTTCTGTAGTACTGATTGTCTACCTCTGCGTCCTGCCACTGATCATACACACTTACCCGACACACTGGATCATCTGGCACATCTGCTATGGCCACTGGAATCTTGTAAATATTGTGTTTCATTACTACAAGGCCATCACAACATCGCCTGGATATTCTCCACAGGAAAAGTCTGATATTCCAACAGTGACGATTTGTAAGAAGTGTATTGTTCCCAAACCGGCTAGGACGCACCACTGCAGTATCTGCAACACgtgtgttttaaaaatggacCATCACTGTcCCTGGTTAAATAACTGTGTGGGCCATTTCAACCACCGCTACTTCTTTTCCTTTTGCCTTTATATGACCATGGGCTGCATCTACTGCAGCATCAGCGCCAAAGACATGTTCTTAGACGCTTACTATGCCATTGAGAGCTATTATCAGACTCCTCCACCCCATTTCACTTATGAGGAGAAGCTTTTTCATAAGAGCCTTCTTTACCTGTGGGTGCTAACCAGCTCGGTGGCAGTAGCCTTGGGAGGCCTAACCATCTGGCATGCTGTACTTATCACCAGAGGAGAGACAAGTGTGGAGAGACACATTAACCGCAAAGAGAAAAAACGTCTGAAGCAGATAGGCAAGGTTTTCAGGAATCCGTATCATCATGGAAGAATAAATAACTGGAAAATCTTGTTTGGTGTGGAGAAAACGAGTCAGTGGATAACGCGGGTACTGCTACCCTCCAGTCATCCTCCTCGTGGTGATGGGCTAACATGGGACTGtcctccacacagacaggacgCCATGGACACcatataaaagtttaaaaaaatacaaacccaCATTTCAAACCAGCAGATTTCAGTCCACTTAGTACAACGATCAGCACTTTTGTGTTAGCAAAGCATCACGGCGGTGTGAAGTGCAGGCCCTGCTCAGTCTCCTGACAAGGAGAAGCTGATTTTATGCCTTTTTATGGTGGTGTATTGCAGTGTCTTAaatgtaaaagtgactggatgTGCCAAAGACTTACTGCGAAATGATCTTTCCTGGATGTGTGTTtagtattttgtgttatttgtgaGAAACATCACACATCCTTTTGAGGTATTTTAATGGGTGAAACATTTCTAATTTGGGCTGTGCATTTCATTAAAAGGACATTAATGGTGAAAAATAGTTTGGAAGAAGTGTAATTACTGAGAAGTTGGTCCAATTATGTGTAATTTGCTTGTTTTATGGTAACATcttgaaaataattttacagtGTGTCTTTAAGTATATTTGGAAAGATGTAATTTTATCATGTATTAGGTACACTGTTCAATCATCAAACTGAtcttatgttctttttttagtgATTCATTAAGATGTTTTGGCTGCTAATAAGCTGACGAGGATCAGCCATTAATGAGACTGAAATACAACAGCATTTCACTAAACAGCAAGATGAtcattgtgaataaaaatgatatcGGAGCTGTGCTccatacagctgagcagttttgtacatttcctttttataataaatcatgttttgagTAGA
>XM_026915839.2
AGGACAGAGCAtactttcctgtttttttaaggATATTCATTGACATTTGATCTAAAATTGGTGCAGGTGAAATGGCTCCACTTAATCAAATGACTTTCTCAAGTTTGCTTAAGGCAGTTGTGACTTCTCCTTCTCCGTTCACCTTCTCCTGTTCCCAAATTAGCAAGGCTCCATGGTGTGTTGTGGTGACTTTTGAAATCCCTTTAACAATTCATGAGCTGCACCTTGCAAGACCCAAGTCGGGTCTATTCTTTGGAACTGATACTGTATCAGATGACTTGAGGACATTTTCCCTTGAGGAAATTAATTCAGTGCTGAGTTACAGTGGTCTTGTATCTTGTGGCGTTCGTAACGGAAAGTGTATAGGATCAGGACATCATCGCTGGTACTGGAATGTTGCAGTCTCTGATCGCTGAAGATGGAAGATGTTTTCTTGCTTGCATTTAGATGAtctgatgacttttttttttaaatgattcagaCACCTTAAGTTTCCTTTTaatggaagaaaagaaataaaggcCAGgaagAGGGATGCATAGCTGGAGGTGTTATTTCTCAAGGCTCATGCGTCTCTCAGTGCGCTGGGTCCGCCTGTGTCCCCAGCAGAGCCAAGGCAAGCGGCCTGGCCCACTCCGGCAGTTATGGAGCTATGGAAAAGTCATTTTCAACTCTCTCTACTTCAACATCCTCACCAACTGGGATACGGTGCTTGACTCAATCTTTGAACCTGTTTACTGGTTGGTGGACAACCTGACCCGCTGGTTTGGGGTGgtgtttgtgtgtctggtGATTGCTCTCACCAGTTCTGTAGTACTGATTGTCTACCTCTGCGTCCTGCCACTGATCATACACACTTACCCGACACACTGGATCATCTGGCACATCTGCTATGGCCACTGGAATCTTGTAAATATTGTGTTTCATTACTACAAGGCCATCACAACATCGCCTGGATATTCTCCACAGGAAAAGTCTGATATTCCAACAGTGACGATTTGTAAGAAGTGTATTGTTCCCAAACCGGCTAGGACGCACCACTGCAGTATCTGCAACACgtgtgttttaaaaatggacCATCACTGTcCCTGGTTAAATAACTGTGTGGGCCATTTCAACCACCGCTACTTCTTTTCCTTTTGCCTTTATATGACCATGGGCTGCATCTACTGCAGCATCAGCGCCAAAGACATGTTCTTAGACGCTTACTATGCCATTGAGAGCTATTATCAGACTCCTCCACCCCATTTCACTTATGAGGAGAAGCTTTTTCATAAGAGCCTTCTTTACCTGTGGGTGCTAACCAGCTCGGTGGCAGTAGCCTTGGGAGGCCTAACCATCTGGCATGCTGTACTTATCACCAGAGGAGAGACAAGTGTGGAGAGACACATTAACCGCAAAGAGAAAAAACGTCTGAAGCAGATAGGCAAGGTTTTCAGGAATCCGTATCATCATGGAAGAATAAATAACTGGAAAATCTTGTTTGGTGTGGAGAAAACGAGTCAGTGGATAACGCGGGTACTGCTACCCTCCAGTCATCCTCCTCGTGGTGATGGGCTAACATGGGACTGtcctccacacagacaggacgCCATGGACACcatataaaagtttaaaaaaatacaaacccaCATTTCAAACCAGCAGATTTCAGTCCACTTAGTACAACGATCAGCACTTTTGTGTTAGCAAAGCATCACGGCGGTGTGAAGTGCAGGCCCTGCTCAGTCTCCTGACAAGGAGAAGCTGATTTTATGCCTTTTTATGGTGGTGTATTGCAGTGTCTTAaatgtaaaagtgactggatgTGCCAAAGACTTACTGCGAAATGATCTTTCCTGGATGTGTGTTtagtattttgtgttatttgtgaGAAACATCACACATCCTTTTGAGGTATTTTAATGGGTGAAACATTTCTAATTTGGGCTGTGCATTTCATTAAAAGGACATTAATGGTGAAAAATAGTTTGGAAGAAGTGTAATTACTGAGAAGTTGGTCCAATTATGTGTAATTTGCTTGTTTTATGGTAACATcttgaaaataattttacagtGTGTCTTTAAGTATATTTGGAAAGATGTAATTTTATCATGTATTAGGTACACTGTTCAATCATCAAACTGAtcttatgttctttttttagtgATTCATTAAGATGTTTTGGCTGCTAATAAGCTGACGAGGATCAGCCATTAATGAGACTGAAATACAACAGCATTTCACTAAACAGCAAGATGAtcattgtgaataaaaatgatatcGGAGCTGTGCTccatacagctgagcagttttgtacatttcctttttataataaatcatgttttgagTAGA
>XM_034309628.1
GATGTTTAGACACAACAGGGCTGGCAGTCATCAGGCCTGGTTGTGTCGAGTCTACTTCAACACTGTTTTCAATTAAATTTGGTTAATGGTTTGACTGAGTAACTAAAGGGCAAACACTTTTTTCACACAAGGATCAGGACATCATCGCTGGTACTGGAATGTTGCAGTCTCTGATCGCTGAAGATGGAAGATGTTTTCTTGCTTGCATTTAGATGAtctgatgacttttttttttaaatgattcagaCACCTTAAGTTTCCTTTTaatggaagaaaagaaataaaggcCAGgaagAGGGATGCATAGCTGGAGGTGTTATTTCTCAAGGCTCATGCGTCTCTCAGTGCGCTGGGTCCGCCTGTGTCCCCAGCAGAGCCAAGGCAAGCGGCCTGGCCCACTCCGGCAGTTATGGAGCTATGGAAAAGTCATTTTCAACTCTCTCTACTTCAACATCCTCACCAACTGGGATACGGTGCTTGACTCAATCTTTGAACCTGTTTACTGGTTGGTGGACAACCTGACCCGCTGGTTTGGGGTGgtgtttgtgtgtctggtGATTGCTCTCACCAGTTCTGTAGTACTGATTGTCTACCTCTGCGTCCTGCCACTGATCATACACACTTACCCGACACACTGGATCATCTGGCACATCTGCTATGGCCACTGGAATCTTGTAAATATTGTGTTTCATTACTACAAGGCCATCACAACATCGCCTGGATATTCTCCACAGGAAAAGTCTGATATTCCAACAGTGACGATTTGTAAGAAGTGTATTGTTCCCAAACCGGCTAGGACGCACCACTGCAGTATCTGCAACACgtgtgttttaaaaatggacCATCACTGTcCCTGGTTAAATAACTGTGTGGGCCATTTCAACCACCGCTACTTCTTTTCCTTTTGCCTTTATATGACCATGGGCTGCATCTACTGCAGCATCAGCGCCAAAGACATGTTCTTAGACGCTTACTATGCCATTGAGAGCTATTATCAGACTCCTCCACCCCATTTCACTTATGAGGAGAAGCTTTTTCATAAGAGCCTTCTTTACCTGTGGGTGCTAACCAGCTCGGTGGCAGTAGCCTTGGGAGGCCTAACCATCTGGCATGCTGTACTTATCACCAGAGGAGAGACAAGTGTGGAGAGACACATTAACCGCAAAGAGAAAAAACGTCTGAAGCAGATAGGCAAGGTTTTCAGGAATCCGTATCATCATGGAAGAATAAATAACTGGAAAATCTTGTTTGGTGTGGAGAAAACGAGTCAGTGGATAACGCGGGTACTGCTACCCTCCAGTCATCCTCCTCGTGGTGATGGGCTAACATGGGACTGtcctccacacagacaggacgCCATGGACACcatataaaagtttaaaaaaatacaaacccaCATTTCAAACCAGCAGATTTCAGTCCACTTAGTACAACGATCAGCACTTTTGTGTTAGCAAAGCATCACGGCGGTGTGAAGTGCAGGCCCTGCTCAGTCTCCTGACAAGGAGAAGCTGATTTTATGCCTTTTTATGGTGGTGTATTGCAGTGTCTTAaatgtaaaagtgactggatgTGCCAAAGACTTACTGCGAAATGATCTTTCCTGGATGTGTGTTtagtattttgtgttatttgtgaGAAACATCACACATCCTTTTGAGGTATTTTAATGGGTGAAACATTTCTAATTTGGGCTGTGCATTTCATTAAAAGGACATTAATGGTGAAAAATAGTTTGGAAGAAGTGTAATTACTGAGAAGTTGGTCCAATTATGTGTAATTTGCTTGTTTTATGGTAACATcttgaaaataattttacagtGTGTCTTTAAGTATATTTGGAAAGATGTAATTTTATCATGTATTAGGTACACTGTTCAATCATCAAACTGAtcttatgttctttttttagtgATTCATTAAGATGTTTTGGCTGCTAATAAGCTGACGAGGATCAGCCATTAATGAGACTGAAATACAACAGCATTTCACTAAACAGCAAGATGAtcattgtgaataaaaatgatatcGGAGCTGTGCTccatacagctgagcagttttgtacatttcctttttataataaatcatgttttgagTAGA

Function

NR:

description
probable palmitoyltransferase ZDHHC16 isoform X1

GO: NA

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915838.2 False 2138 mRNA 0.41 11 4810652 4820585
XM_026915839.2 True 2335 mRNA 0.42 11 4810652 4817691
XM_034309628.1 False 2100 mRNA 0.42 11 4810652 4827352

Neighbor

gene id symbol gene type direction distance location
ubtd1b ubtd1,ubtd1b,LOC108437310 coding downstream 23076 4770544 ~ 4787576 (-)
mapk8b mapk8b,LOC108274025,LOC108437314,LOC107388204,LOC108263675,LOC103040580 coding downstream 161976 4625598 ~ 4648676 (-)
LOC113527719 LOC108273413 coding downstream 252518 4550108 ~ 4558134 (-)
sox9a sox9 coding downstream 515412 4291951 ~ 4295240 (-)
LOC113527563 LOC108273452,LOC108437319 coding downstream 794339 4013847 ~ 4016313 (-)
fam20a fam20a coding upstream 10559 4837911 ~ 4849678 (-)
trnap-cgg_2 NA coding upstream 71422 4898774 ~ 4898845 (-)
trnap-agg_2 NA coding upstream 72614 4899966 ~ 4900037 (-)
trnap-ugg_3 NA coding upstream 73784 4901136 ~ 4901207 (-)
trnap-ugg_4 NA coding upstream 74976 4902328 ~ 4902399 (-)
G190885 NA non-coding downstream 59775 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 144081 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 213829 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 235122 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 521849 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 555643 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 615610 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 655268 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 838821 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 840532 5667884 ~ 5669753 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 1955159 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 1982900 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 1999261 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 2200879 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 2599673 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 84382 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 121811 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 232146 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 657339 5484691 ~ 5490925 (-)
G191430 NA other upstream 783768 5611120 ~ 5613954 (-)

Expression


Co-expression Network