tbx21 (tbx21)


Basic Information

Item Value
gene id tbx21
gene name tbx21
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12348960 ~ 12360643 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915883.2
agtgatgcactgttatttatattacagtaatgtacccagtacaatgaaataaatcaagaaaCACCGATATGTTAGGCATGTCCGACATGAGACGGGTCTTATTTTGGCCGTAAAAGAGACAGGAGCAGTTCTCAGAAGTCGGAAGCTTGTGTTAGAGAGAGCCAGAAAGCGCTTCATTTTGCTTTCTTTGCCATTAAAGATTTCAGTGGAGCTTGTTTATTTGAGTAGGTAAAGAAAGTAAGCTGTAAACCTATGATCCTGCACGTTAGCGCGGAGCGAGCCTGCAGATGGGCGGCATAGGCGGCAGCTTCTGTATCAACATGCTCAATGGAAGCGAGGCGCAAAGTTTGGCCAAAGACGCAGAGACGAGCGGTCACCTTCACCGGAGCAAGGAGCTAGCGGACTTCAAAATGGGCGTCCAAGACGCGAGGTTGTACTATTCAGACTCACTTCCAAATGGCCAGGACAACTTTTCGCTGCCGTACCACGGCGAGCAGAGCGCTGGAGAACTCGGAGCGCAGGCGGGAAGGTTTTACTccgcggcggcggcggcggcggcagcAGCGGCAGCGGCTCCGCTCGGTAACTGTGCGTTCAGCCGCAGCAGCGCGGCCCAGGCTTacgcaggggctgatgggtattCACCGGACAGTAAAGACGGCTACTCGGCCAGCGCGGACTCGTATCACGCGCACTTTCAGCATGGCTACCCGCGCGCGCCTCTCTATTCCTTACCTGGCCTACAGGTGTGCGGCAAGACGCAGGTGCTCCTCAACAACTACCCGCTGTGGGCCAAGTTTCACAAGTACCAAACCGAGATGATCATCACCAAACAGGGCAGGAGGATGTTCCCGTTTCTCAGTTTTAATATCAGTGCTCTGGACCCCTCGGCTCACTACAACGTGTACGTGGATGTGGTTCTGGCTGACCAGCACCACTGGAGGTACCAGGGAGGCAAGTGGGTGCAGTGTGGCAAAGCAGAGGGCAGCATGCCAGgaaATAGGATGTATATGCATCCTGACTCTCCTAACACAGGGAATCACTGGATGAGGCAGGAGGTCTCATTTGGCAAGCTCAAACTCACCAACAACAAGGGCAGCTCCAACAACATGGCACAGATGATAGTGCTGCAGTCTCTCCACAAGTACCAGCCACGCTTGCATATCATGGAAGTGAAGGAGGATGGAACAGAAGATCCCTTCCGCAGTTGTAAGGCGCAAACCTTTATCTTCCCCGAGACCCAGTTCATTGCAGTCACTGCCTACCAGAATGCAGACATCACTCAGCTGAAAATAGACCATAACCCTTTTGCGAAAGGTTTCCGGGACAATTATGACACATTGTATGCCCCGCCTGACTCGGATCGTATCACCCCCTCCCCCACTGAGGGCCAACAGCTCATGGCAGCCAGCTGCTATCCCCGTCAGCCTTACCTGGCCGAGCAGTACATGAGTCCACTGCAGCACGGTCGCTTTTACAGCTGCGAGCCTGTCAGCATGGCACAGGGGTGCCCCAAAGACCCAAATGGCAGTCACCATGGGCGCTGGTACCTACCTGGCCAGCAGGGCACGCCCTCCAATCTACTGGACTTCAGCTCTTACGAAGGTGACTATACGGCCAACAGCCTCTACAAGCCCTTTCCTTTACAGACATCACCCCACCACCCGTTGAGCTACTATCCTGAAAACCCCTTCACTTCTGGGCCAATATCAAGTGCTAGCCCTGCCACATGGAGCACAGCAAGACCTTCACCACAGTACCTCAGCCACTCCCACCCTGGGAAAGCTACATCTAGCTTGAGTTGGTTCCGCCCCATGTCTTCTTCCGCCATGTCCTCATCTCCTCCAGCAGTAAATTCCCGCCTTCACCCTTCTCCATCACTCCTTGAGTCCTTGAGGCTGCCGGTACTACAGGACAAGCCAAAAGAGGTGGTGGAGGACACGTGGATGGAGACCCCCTCTGTGAAATCAGTAGACTCGGTCGACTCTGGACTTTTCGAGGGCGCAGAAAGCAAGAAAAGACGAGTGTCACCCTACGCCTCCAGCACTGAGAACTCTCCTCCCATTCGAAGCAGCGAAGCCTGTGAGAAGGACAACAGCAGCGATGCGGGCTACTATGGCTTCTACAGTCACTGAGAGCCATCGTATCTGAGTTAGTGTAGCACTCCTGCTGTGTCCCACCCACAGAGCTGCACTCCCTTCTGGGACAAAGCTCTGTGGGAATCTAGGGGAGGGACAACAGAGGCCAGTAACAGCTAACACAGAACTCTCAATCATTTTTCCTTCATAGCCCTGGTGCTATTTGCTTTTTATACCTACAGTGTTATTGCTGGCCCTCTCATGTTTGGTGTGCTGCTTCCTCATGGTAGCGCTGTATGGGTAAGGTCAGGTGGAGGCACTCCACTCATCCTGAAGGTCACTGTCATGGTGAGGACTGGTGAGTCAAGATAATGTGACTGGGCTGAAACATTGGCCTGGAGatatatgcatgcacacacacagacctggaTGAATTCAGAAACTGTTTAGCATTTAAAGAAGTCTGCACACCTGCTGACACTCCCCTCAAGGACCTGTCCAGTCTCCCAGTtctcccagacacacacacacacacacacacacatttattaggTGGGAAGTTTTTCCTCAAGAATATAGTTATGTACTTTTGAGTATATACTTATGTTTGATGATTCCAGTTCATTCACATTTTCACTACTCCAAATGAGCCTTTGAGTGTCCAATGATATAAGTTGATGTAAATGATTGATAAGTGCTATTAGAGGAAACATAGTATTTCTATCTGCATGGAAAGGTCAGAACGTGTTCCACTCATCCTGTCAGCTGTCTTCCTGTCAACCTCCCATTCTCTCTACTAAATCGCCCTAACTAGATCATGTGCCAAACAGGGGCTGGCTCTAATTTCATTTTGTTCCATATGCCTCAGTACCACTGTATTGTACATTAATGAAGTAAATGTAATGGTTCTGCTTTAAATTAAGCTTTGCTGAACTTTGGATTCGTACATGATGAATTGCAGTACAAATCAGGTGTTACAGTATTTATTCGgtcaacacaaacacagcaatgTCAGACTGATTAGCATCAAAAGAACATTCTTAACCCAACATCAGCAAGTCTCACAAATAGGACAAGAAAGACAACATGCAGATAGACAGGGTGGGAAAATGGACACCTGGAAGGGGCATTGTGGTGACTGGACATCATAATCAGACAACAGCAGACGAACGAGACCTCAGTCTCACCTTATCAGGGCCTGCAGACCTCCAAAGGTGAGAATGACCTTCGACAGCTCAGTGGGCGACAGCCATAAGAATGTTAACACGCTGACTGTGGAGGCAAACGCACAATACAGGACATGGTTCACCTTTCAGAATTTAGACACATTTCGTTGGTCGTCGGCTAATGTGATCTTTCAGTGAACTGCGTATTAAAGTACTTCCCACAACAACATATTTTACGATAACACATAACGGTCCAGTACACACATGTGCgtatatgcacatgcacacacaaagaggggcgacacaatttttttttttattattatttatatcttGTTTAAGCAAACTGTAAACAATTCTGTAATAAGACTGCACTTACTTAGTATGTACACtgttaaaaatagaaatgcTTACAATATGACTTTTTATGAAATTGTTGTTATATTCTGTACTGTCAGTATTTTATAGAGCTTCCCAAAAACCTGTATAGTGGAATATCAAAGCTTCAGTATGTGGTCAGTGACTTTCAAACCAGGGAGTTTGGATTTGCTTACCTTAACATGGGAGCAGtgtatttatttcagtgctaAACCAAATTACATATTAGCAATACAATGAAGAGGACAATCACAGTGAGATTTCATATTGCTACTGCTCTGTTAGAAACATATTGTTAGATATTACTCAGGTCAAGCATGTGCCAATGAATATTCAGCTCCATTTGTGTAAGTAATGGATATGTGGAAAATTAATACTGATTTAAAATAACAggattttgtttattgtttccTGGTTCTAAGTAGTAAGGTGCAAACAATTGATAGGTATGAGCTAAACTGGAAGTTATTTTTGGTAAACTGTTTCTAATTTCAAGTGCaatttaaaaagtgttcataTTAATTTAAGAGAACTGTAATtacctttttttattcttgaacaATTCTTGAATATGCATTCAAACCATCGTTTGAATATTTTACGAACACTGAGGATACAGGTGTATAGTATTGTTAGGATATTTGGTAGGATATGTTTTAGGTGACCCCTAGTGGACGATCTCCTAATTCAGTTATAATAATGGCCACTATTTATcaaagtttccaaaaaaaaagggagcAAATTTGTGTGCACAGAATGATATATGAAGAAATATACATCTGATTCATGAAACTGTAATAGGACATCAAAATGAGTGGTTAGGCTGAAGTGATGAATCAGTTTTGGCTGTTCGACATAACAGTCCCTGCCCACTAGTCCCTTATTTACATGCTATATGCATACAGCATACCCCAGTTTACCCTCAAATACATCTATGTACAACTTTGCTCATATGAAACTCTGATGAATAATGCCTTATGTGTGAGGGAATTTACCATCAAGCTGTCCCGTCtccaaagcttttttttatggACTAGCAGTGCTATTATCAGATTAACTTTAAGGTATATTTATATGATGTTCCACTGAACCATGAGTTTAACAATCTTATCTGTGAATGAAAAACATACTCTGtaatatgaaaattaaatattttccaatGTCAACTTAAAGCCAAGGTTCCTAAATAACAGGAACCTTTCCCCAAATAATGCAGACAAACTGTACAGACTGAAATCATGTATTTGATTTGTtctaactgtaataaaacatatatgtca

Function

symbol description
tbx21 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including heart looping; lymphocyte migration; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; hematopoietic system; integument; kidney; and telencephalon. Human ortholog(s) of this gene implicated in asthma, nasal polyps, and aspirin intolerance. Orthologous to human TBX21 (T-box transcription factor 21).

NR:

description
T-box 21

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915883.2 True 4902 mRNA 0.45 6 12348960 12360643

Neighbor

gene id symbol gene type direction distance location
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 coding upstream 31856 12269685 ~ 12317104 (+)
cdk5r1b cdk5r1,LOC108426451,LOC103047129 coding upstream 163922 12179023 ~ 12185038 (+)
LOC113527660 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947,LOC107689267 coding upstream 206217 12141560 ~ 12142743 (+)
cacna1g cacna1g coding upstream 315607 11857394 ~ 12033353 (+)
spata20 spata20,LOC107679345,LOC104963383,LOC107676339 coding upstream 517296 11795917 ~ 11831664 (+)
pnpo pnpo,LOC107565739,LOC102778316 coding downstream 17835 12378478 ~ 12383567 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 30150 12390793 ~ 12398133 (+)
nfe2l1b nfe2l1,nfe2l1b,LOC107565927 coding downstream 46710 12407353 ~ 12415790 (+)
phkg2 phkg2,LOC107743765,LOC107675026 coding downstream 62107 12422750 ~ 12430535 (+)
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107675023 coding downstream 73892 12434535 ~ 12446996 (+)
G195047 NA non-coding upstream 99205 12249060 ~ 12249755 (+)
G195016 NA non-coding upstream 172841 12174394 ~ 12176119 (+)
G195002 NA non-coding upstream 203753 12145001 ~ 12145207 (+)
G194989 NA non-coding upstream 208740 12140012 ~ 12140220 (+)
G194828 NA non-coding upstream 310232 12038503 ~ 12038728 (+)
G195083 NA non-coding downstream 10413 12371056 ~ 12371285 (+)
G195084 NA non-coding downstream 13367 12374010 ~ 12374280 (+)
LOC117598562 NA non-coding downstream 91250 12451893 ~ 12453678 (+)
G195225 NA non-coding downstream 189491 12550134 ~ 12550360 (+)
G195287 NA non-coding downstream 282625 12643268 ~ 12643526 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 263601 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 727691 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1062692 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 1100747 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1702413 10644826 ~ 10646547 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 112036 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 598292 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1122658 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1652930 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1926716 14287359 ~ 14324281 (+)

Expression


Co-expression Network