plcd3b (LOC108273813,LOC108424888)


Basic Information

Item Value
gene id plcd3b
gene name LOC108273813,LOC108424888
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9707683 ~ 9722874 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915889.2
TATTTCGGATAAATGCGGCAAGTGCTGCGCGTGAAGCCggaggaagggaaaaaaaaatcagtggtgTTTACTGCGTAGGTAATATAGGTCAAGGACGCTGAAGCTCAGAAGAAGGAGGAATAGGTGCTGAAAAAGCGGTCGGGCTGCAGAAGGGTGATGCTGGGCAGCGAGGACAAGGCAAAGGCCGTGCACAGGAACGGAGCTGCTAAACCTAAAGCAGAGCAACCTCTGAGGAGTTTAGgtgtcCAGGATGACGGAGATGTACAGACCATGCTGCAAGGTTCTGCCATGTCAAAGCTGCGTTCCCCTCGCTGGCAGAGGAGATGCATGCTAAAGCTGCAGGATGATGGCATCACAGTGCGTTGTGAATCCAATGGTACCTTCAGCAAGACCAAAACCTTCTCAGTAATGGAGGTGGAGTGTGTGCGTGAGGGCTGTCAGTCAGAGACCCTGCGCAAGTTGGCTGGTTCTGTCCCAGAGGCACAGTGTCTGACCATCGTCTTTAAGGGAGGAAGGAAGAGTTTGGACTTGCAGTGTCAAAGTATAGAGGAGGCACAGCACTGGGCTCGGGGGATCTGCACCCTACAAGACCGAATCAACAACATGAGTCATACTGAGAAACTCGACCACTGGATACATGGCTACCTGAGGCAGGCAGATTTAAACCAGGATGGGAAAATGACTTATGAAGAAGTGCAGACACTCCTCCAGATGATCAACATAGACCTCGATGAGCAATACGCCCTTAGATTGTTCAAGAAATGTGACCAGTCAGCAGACAATCGTCTGGACCACAGTGAGATCGAGCTGTTTTGTCGTGAGCTGTTGCGTCGACCCGAGCTAGATGCGGTGTTCCTGGAATACTCCTCCAACGGCCGTGTGCTGTCCACGGTGGACCTGCGTGAATTTCTAAAAAACCAGGGAGAAGACAACACCCTTGTCCATGCACAGAGTCTCATCCTTACTTATGAACTCAATGAGTGGGCTCGGAAAAACCAGCTCATGACAGCCAACGGTTTCACCATGTACATGCTGTCGAAGGAGAATGTTGTGTTTGATCCAGAGCATGGCAGAGTGTATCAGGATATGAGCCAACCGCTCAGTCACTACTTCATCTCCTCTTCCCACAACACCTACCTTACCAAAGACCAGGTCATGGGTGAGAGCAGTGCCGAGCCGTATATCCGaGCTCTTAGCCATGGTTGCCGCTGTGTTGAGCTCGATTGTTGGGATGGAGATAGAGAACCGGTGATTTATCATGGCCACACCCTTACTTCCAAAGTACCTTTCAGAGAGGTGGTGGAGGCCATCGCTGAGTATGCATTTAAGGCCTCTCCGTACCCTCTGATTCTGTCTCTGGAGAATCACTGCTCAGTGGAACAGCAGGCAGTTATGGCCCAGCAGCTGCACTCTATCCTGGGGGATAAACTGCTCACTAAACCCCTTAACAATCACCAGTGTGACAGCCTTCCCTCACCAGAGGAGCTGAAAGGGAAAATCCTGGTAAAGGGAAAGAAGGAGCGAGTGGAGCAGGAGAACTCCAGTTCCTCTGAATCCAGCTGCTCTGAAGACGAGAGTAAATCAGAGGGCAAAGTCAAGgcaaagaaagagagcaagaagTGTACGTGTGCTTCTTCTCCAAAGGTGTCTAAGCTGTGTCCAGAGCTCTCCAACCTGGTAGTGTACACTTGCAGTGTTCCTTTTAAAGGCTTTGATCAGGCAGCCAAGAGACCTCCTAATGAGATGTCCTCCTTCTCTGAGAGCAAGGCTCTTAAACATATCAAAAACTCAGGGAAGATCTTTGTACGGCATAACACCTGGCATCTGAGCAGGATCTACCCATCTGGTCAGCGCCTGCAGTCCTCCAACTACAACCCTCAGGACATGTGGAACGCCGGCTGCCAGATTGTGGCACTAAACTTCCAGACACATGGGGAGCAGATGGATCTAAATCAGGGGCGTTTCTTACCCAATGGACGCTGTGGGTATATACTAAAGCCCAGCTTTCTGTGCCAGCCTGACTCCGAGTTCAATCCTGAAAACACTGGGGGAGGACCAGGACACAACCCTACTCTCCTCATTATTAAGGTCATCTCAGCCCAGCAGCTGCCTAAGCCAAACACAGAGAAACTCAACTCTATTGTAGACCCTCTGGTCTGGGTGGAGACTCATGGGGCTCCCATagacaacaacaagaaaaagaCACACCGCATTGACAATAACGGCTTTAACCCCAGGTGggactgcacctttaagtttCTGTTGCATGTGCCAGAGCTGGTCCTAGTTCGCTTTGTAGTGGAGGATCATGACTACACGGCACGAAATGAATTCCTGGGCCAGTTCACTCTCCCATTCACCAGTATGCGCACAGGTTACAGACATGTGCGGCTACTGAGAGCAGATGGTTCAAGCCTCTCTCCTGCCAGCCTCTTCATTCATGTCAAGGTCACACCCAATTACAGCAGCCCCAAGCACGTTGCCTCAACCAAAGCCTAGTCGAACACAGGAAATATAGTCATGCAGTCATAGACTACTGACTGGGTTACAACGGTTGATACTGATCTACAGTAATAATGACCTAATTTATATTCTGTatgtatgttattgtttattctttaaataGGGACTCATTGAGAAAGATATAATGCAAATTAATCACAGAGACCAAATACAAGAAGCTGAGGAGTATATTCTCAATAAAGCCAGGAGTTTTTCAGGCCCGGGGTTGCCCCAAGAGATTATATTACAGATTGATGAGATTATCATTAATGAAGGAATAAGAAACTGGTCAAGCAATTTATTAAGTAATTATATAATGTCTTTAGAAATGATGCAGCAATACAACAGGGTTCTTTTAGGAATTTTTTGTCATGTAACGTGTCAAATGTAGCAGTATCTATTTAATAGCCTTTAGGCTTCTCTTCCTATGCAACTGAAAAATCCTATTGTTTAAAATGACGCTGTGCTTAAACTGAGAAGGATAATGTTTCGAGGGATTGTGGTGCTCATGGATTGTAAATGCAGCCTTTTTCCTCTTGATTGTAGGGAGAGAGTTATGCATGTTGGCAAGTTGAtaatgaaaacactgaaactgtCTCACTAAAAGTGTACCGTCCTGTACAAACTTTTCAGGGCTGATACGAACTATGCTTTTTTATATAATCAGTTAAAAAAGGAAACTTAACTGCTGAAGTAATGTTAAAGTTAAGGGAAAAAATGGGTTTTTGACGTGATGGTGATGATCtgcatcattcattcatattcctgtctgtttctcatatttataatattataagtTTATACATTGCtaattaaaatatacacttctgttttttctgACATAACCTGATATttgcatttgtgtaaattctgaATAATTGAACATGTATTTGGCACCctgctttaaaaaatgtatatggcTATTACAGCCCTGACTACTATTATTTAAGTAAGTCAGATAAAATAACATtccacacgcacacatgcattGTTTTCGCTCTATAACTACAACCTCATAATAATTATATGTTTAAGTTTGGAGGTCAGGTTCTGTTAACTCATGTATATATGCCAGCATCTGTTTTAGACGGCATAGCATTTTCTTCCCTATGTTATTCTCAcagttttaattttgtaatGTGATATGTGGGTTCTctatttatatgatttataccTTATACAGTTTCTAGTATTATTCAGTATTATAAGTTCATTTGGGACTGATAAAATCATTCTGTTTGTATAACAATGCCAGTGCTTTAATGCTTTGATGAACAGGTCTGTCAGATGTGTTTGAAATAAGAAGCACTTCATTCTTTTGTTTAGTTATCATGTGCTAGTAAATGTAAAGTAAGGAGAAATCAAAACCCTCActgttatttgaaaaatatgacAGTAATggcaaaaaagcaaaacaaaatatttgcacTGTTAAAGAAGCCATACAGTTATCTTTGtgagatatactgtatgtattataGCCATTAATAAGTTGATAAAATTGTCATGTACTGTAATgccaaatatttaatttgtaatcTCCAGATAtgcaaataaacacttttttgttgtaTAGAAA
>XM_026915890.2
TATTTCGGATAAATGCGGCAAGTGCTGCGCGTGAAGCCggaggaagggaaaaaaaaatcagtggtgTTTACTGCGTAGGTAATATAGGTCAAGGACGCTGAAGCTCAGAAGAAGGAGGAATAGGTGCTGAAAAAGCGGTCGGGCTGCAGAAGGGTGATGCTGGGCAGCGAGGACAAGGCAAAGGCCGTGCACAGGAACGGAGCTGCTAAACCTAAAGCAGAGCAACCTCTGAGGAGTTTAGgtgtcCAGGATGACGGAGATGTACAGACCATGCTGCAAGGTTCTGCCATGTCAAAGCTGCGTTCCCCTCGCTGGCAGAGGAGATGCATGCTAAAGCTGCAGGATGATGGCATCACAGTGCGTTGTGAATCCAATGGTACCTTCAGCAAGACCAAAACCTTCTCAGTAATGGAGGTGGAGTGTGTGCGTGAGGGCTGTCAGTCAGAGACCCTGCGCAAGTTGGCTGGTTCTGTCCCAGAGGCACAGTGTCTGACCATCGTCTTTAAGGGAGGAAGGAAGAGTTTGGACTTGCAGTGTCAAAGTATAGAGGAGGCACAGCACTGGGCTCGGGGGATCTGCACCCTACAAGACCGAATCAACAACATGAGTCATACTGAGAAACTCGACCACTGGATACATGGCTACCTGAGGCAGGCAGATTTAAACCAGGATGGGAAAATGACTTATGAAGAAGTGCAGACACTCCTCCAGATGATCAACATAGACCTCGATGAGCAATACGCCCTTAGATTGTTCAAGAAATGTGACCAGTCAGCAGACAATCGTCTGGACCACAGTGAGATCGAGCTGTTTTGTCGTGAGCTGTTGCGTCGACCCGAGCTAGATGCGGTGTTCCTGGAATACTCCTCCAACGGCCGTGTGCTGTCCACGGTGGACCTGCGTGAATTTCTAAAAAACCAGGGAGAAGACAACACCCTTGTCCATGCACAGAGTCTCATCCTTACTTATGAACTCAATGAGTGGGCTCGGAAAAACCAGCTCATGACAGCCAACGGTTTCACCATGTACATGCTGTCGAAGGAGAATGTTGTGTTTGATCCAGAGCATGGCAGAGTGTATCAGGATATGAGCCAACCGCTCAGTCACTACTTCATCTCCTCTTCCCACAACACCTACCTTACCAAAGACCAGGTCATGGGTGAGAGCAGTGCCGAGCCGTATATCCGaGCTCTTAGCCATGGTTGCCGCTGTGTTGAGCTCGATTGTTGGGATGGAGATAGAGAACCGGTGATTTATCATGGCCACACCCTTACTTCCAAAGTACCTTTCAGAGAGGTGGTGGAGGCCATCGCTGAGTATGCATTTAAGGCCTCTCCGTACCCTCTGATTCTGTCTCTGGAGAATCACTGCTCAGTGGAACAGCAGGCAGTTATGGCCCAGCAGCTGCACTCTATCCTGGGGGATAAACTGCTCACTAAACCCCTTAACAATCACCAGTGTGACAGCCTTCCCTCACCAGAGGAGCTGAAAGGGAAAATCCTGGTAAAGGGAAAGAAGGAGCGAGTGGAGCAGGAGAACTCCAGTTCCTCTGAATCCAGCTGCTCTGAAGACGAGAGTAAATCAGAGGGCAAAGTCAAGgcaaagaaagagagcaagaagGTGTCTAAGCTGTGTCCAGAGCTCTCCAACCTGGTAGTGTACACTTGCAGTGTTCCTTTTAAAGGCTTTGATCAGGCAGCCAAGAGACCTCCTAATGAGATGTCCTCCTTCTCTGAGAGCAAGGCTCTTAAACATATCAAAAACTCAGGGAAGATCTTTGTACGGCATAACACCTGGCATCTGAGCAGGATCTACCCATCTGGTCAGCGCCTGCAGTCCTCCAACTACAACCCTCAGGACATGTGGAACGCCGGCTGCCAGATTGTGGCACTAAACTTCCAGACACATGGGGAGCAGATGGATCTAAATCAGGGGCGTTTCTTACCCAATGGACGCTGTGGGTATATACTAAAGCCCAGCTTTCTGTGCCAGCCTGACTCCGAGTTCAATCCTGAAAACACTGGGGGAGGACCAGGACACAACCCTACTCTCCTCATTATTAAGGTCATCTCAGCCCAGCAGCTGCCTAAGCCAAACACAGAGAAACTCAACTCTATTGTAGACCCTCTGGTCTGGGTGGAGACTCATGGGGCTCCCATagacaacaacaagaaaaagaCACACCGCATTGACAATAACGGCTTTAACCCCAGGTGggactgcacctttaagtttCTGTTGCATGTGCCAGAGCTGGTCCTAGTTCGCTTTGTAGTGGAGGATCATGACTACACGGCACGAAATGAATTCCTGGGCCAGTTCACTCTCCCATTCACCAGTATGCGCACAGGTTACAGACATGTGCGGCTACTGAGAGCAGATGGTTCAAGCCTCTCTCCTGCCAGCCTCTTCATTCATGTCAAGGTCACACCCAATTACAGCAGCCCCAAGCACGTTGCCTCAACCAAAGCCTAGTCGAACACAGGAAATATAGTCATGCAGTCATAGACTACTGACTGGGTTACAACGGTTGATACTGATCTACAGTAATAATGACCTAATTTATATTCTGTatgtatgttattgtttattctttaaataGGGACTCATTGAGAAAGATATAATGCAAATTAATCACAGAGACCAAATACAAGAAGCTGAGGAGTATATTCTCAATAAAGCCAGGAGTTTTTCAGGCCCGGGGTTGCCCCAAGAGATTATATTACAGATTGATGAGATTATCATTAATGAAGGAATAAGAAACTGGTCAAGCAATTTATTAAGTAATTATATAATGTCTTTAGAAATGATGCAGCAATACAACAGGGTTCTTTTAGGAATTTTTTGTCATGTAACGTGTCAAATGTAGCAGTATCTATTTAATAGCCTTTAGGCTTCTCTTCCTATGCAACTGAAAAATCCTATTGTTTAAAATGACGCTGTGCTTAAACTGAGAAGGATAATGTTTCGAGGGATTGTGGTGCTCATGGATTGTAAATGCAGCCTTTTTCCTCTTGATTGTAGGGAGAGAGTTATGCATGTTGGCAAGTTGAtaatgaaaacactgaaactgtCTCACTAAAAGTGTACCGTCCTGTACAAACTTTTCAGGGCTGATACGAACTATGCTTTTTTATATAATCAGTTAAAAAAGGAAACTTAACTGCTGAAGTAATGTTAAAGTTAAGGGAAAAAATGGGTTTTTGACGTGATGGTGATGATCtgcatcattcattcatattcctgtctgtttctcatatttataatattataagtTTATACATTGCtaattaaaatatacacttctgttttttctgACATAACCTGATATttgcatttgtgtaaattctgaATAATTGAACATGTATTTGGCACCctgctttaaaaaatgtatatggcTATTACAGCCCTGACTACTATTATTTAAGTAAGTCAGATAAAATAACATtccacacgcacacatgcattGTTTTCGCTCTATAACTACAACCTCATAATAATTATATGTTTAAGTTTGGAGGTCAGGTTCTGTTAACTCATGTATATATGCCAGCATCTGTTTTAGACGGCATAGCATTTTCTTCCCTATGTTATTCTCAcagttttaattttgtaatGTGATATGTGGGTTCTctatttatatgatttataccTTATACAGTTTCTAGTATTATTCAGTATTATAAGTTCATTTGGGACTGATAAAATCATTCTGTTTGTATAACAATGCCAGTGCTTTAATGCTTTGATGAACAGGTCTGTCAGATGTGTTTGAAATAAGAAGCACTTCATTCTTTTGTTTAGTTATCATGTGCTAGTAAATGTAAAGTAAGGAGAAATCAAAACCCTCActgttatttgaaaaatatgacAGTAATggcaaaaaagcaaaacaaaatatttgcacTGTTAAAGAAGCCATACAGTTATCTTTGtgagatatactgtatgtattataGCCATTAATAAGTTGATAAAATTGTCATGTACTGTAATgccaaatatttaatttgtaatcTCCAGATAtgcaaataaacacttttttgttgtaTAGAAA

Function

NR:

description
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915889.2 True 4081 mRNA 0.43 15 9707683 9722874
XM_026915890.2 False 4057 mRNA 0.43 15 9707683 9722874

Neighbor

gene id symbol gene type direction distance location
LOC113527304 lasp1,LOC108274031,LOC108424884,LOC108258608,LOC108413872,LOC107689048 coding upstream 64507 9630665 ~ 9643176 (+)
LOC113527805 NA coding upstream 72616 9634877 ~ 9635067 (+)
plxdc1 LOC108274329,LOC108424883 coding upstream 80224 9606131 ~ 9627459 (+)
LOC113527682 LOC108273946 coding upstream 148306 9523356 ~ 9559377 (+)
trnar-ccu_4 NA coding upstream 197887 9509724 ~ 9509796 (+)
nmt1b LOC108273814,LOC108424889 coding downstream 1135 9724009 ~ 9728981 (+)
svild si:dkeyp-94b4.1,LOC108273812,LOC107758427 coding downstream 9486 9732360 ~ 9786384 (+)
znf281b znf281 coding downstream 118509 9841383 ~ 9848378 (+)
muc13b NA coding downstream 132860 9855734 ~ 9869864 (+)
mpp3b LOC108273448,LOC108424894,LOC107669230,LOC107594152 coding downstream 161761 9884635 ~ 9903223 (+)
G193542 NA non-coding upstream 54423 9652172 ~ 9653260 (+)
G193509 NA non-coding upstream 119864 9587165 ~ 9587819 (+)
G193458 NA non-coding upstream 191544 9515921 ~ 9516139 (+)
G193390 NA non-coding upstream 321289 9386143 ~ 9386394 (+)
G193386 NA non-coding upstream 327568 9379273 ~ 9380115 (+)
G193645 NA non-coding downstream 101173 9824047 ~ 9824468 (+)
G193646 LOC108273498,LOC107727700 non-coding downstream 102553 9825427 ~ 9826864 (+)
LOC117598497 NA non-coding downstream 421479 10144353 ~ 10148786 (+)
G193842 minpp1 non-coding downstream 501828 10224702 ~ 10226319 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 602082 10324956 ~ 10336247 (+)
arhgap23b LOC108273815 other upstream 16088 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 192067 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 193848 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 195052 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 195282 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 921952 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1510716 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1563323 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1891025 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 2339934 12062808 ~ 12085359 (+)

Expression


Co-expression Network