hs3st3l (LOC108273751)


Basic Information

Item Value
gene id hs3st3l
gene name LOC108273751
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8927805 ~ 8940831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915891.2
CCCTGGCTGCATAACATACTCCACACACTCAGTGCCTTGCCTCTGAATGTTTAAGTAGGCTACAGTGGAGATGAAACACGCCTTCAGCTGCGACCCTCCAATCAAAGGGAGCGTTAAGATGCGCTCGCGTCAAAGGAGTGCAGCACAAGGAGAGTAATTCCCCCGGGAGAGTCACCgcgagaaagacagaaacaaagaTCACTCAGCACGAgcgctgtatttttatttattgtaatgtattctgtttgattttattctggttttttttccacGCTCTTTTTTTTCGCGCGCGAGCGTTGACGCGCTGAGGTAGCGGCTGTCAGACATGGATCCGGAGACACTCGGCTCTTTTCGGTGGCGTTCACTTTCACGGTGCTTTAAAGTTAAACCAGTAACTTCTTGAACACAATGGCGTCCTTCAGTCTCCCTTCAGAGGGATGGCAAGTTCTCGCGCACCTCCGCCGGACCCTTGGAGACTCGCGCGCAAACTTGTAGCCATGCTGTGGTTCGGTGTGGCGTGCGCTTTCCTCCTCTACTTTCTGCGATGCTGCGAATCTGAAGTGACGGAAAGTTTCAGCTTAAGCCGCGACGAGGCGCCGCTCGGAACGGGACGCTACGGTGAGAGGAACGGGACGGTTAGTGTCGGAGCAGacgggaggaagaggaggaagaggaacgCGGGAGACGGCGCGGATGCGGAGGGCTCGATGAAGGAGAAGGACTGGAGGGGCGCGCGCAGGCTGCCGCACGCGCTCATCATCGGCGTGAAGAAAGGCGGCACGCGCGCGCTGCTCGAGTTCCTGAGGCTTCACCCGGACATCCGCGCGCTCGGAGCCGAGCCGCACTTCTTCGACCGGCACTACGCACGCGGCCTCACCTGGTACAGAAGCATGATGCCCAAAGCGCTGGACGGTCAGATTGTGATGGAGAAAACGCCACGATACTTTGTGACAGCCGAGACACCAGCTCGCGTCCACGCCATGTCAAGAGACGTGAAGTTGATCGTGGTGGTGCGTGACCCCGTGACCCGCGCCATCTCCGACTACACTCAGATCGCCTCCAAGACGCCGGGCATCGCCAGCTTTGAAAGCCTGGCTTTTAAGAACAGATCATCAGGTCAGGTGGACTCTCTGTGGAGCCCGCTCTACATTGGCTTGTATGCCCAGCACCTGGAGCGCTGGCTCGCTTATTTCCCACTCTCTCAAATCCACTTTGTCAACGGCGAGCGGCTCGTCAGTGACCCGGCTTTCGAGCTGGGCCGTGTGCAGGACTTCCTGGGTCTGGAGCGTATTATCACAGACAAGCATTTCTACTTCAACAAGACTAAGGGCTTCCCCTGTTTGAAGAAGGCAGAGGGCAGTGCTGAGCCACACTGCTTGGGCAAAACCAAAGGCAGGACACACGTGCATGTTGAACCTGAGGTCATTCACAACCTCAGGGATTTTTACCACCCACACAATCTGCGGTTCTACCAAATGACTGGAATGGATTTTGGGTGGAAGTGATGTTTTTTCCCTCAATCCAGGCACTCAGCCTCACTCATGCAACGTAGCCTAGGAAACTGTGGAGGGTATATTTGCTTTTCTGAGTAAATATTTGATGCAGTTAGTGCTCACATTGGTAACAGAAACTCTGGGTGAGTTATGAGTCATGCAATCTGATCAAGGGTAAAAGATTGCGCAAtcaaatttgcatttggtgatgtttttCTTAAGGCATCAGATGTCAGGTTTCAGGATGACAGCAAAAAAGAAAGCTGAGTATTAATACTTTCAGACCACAGTGGAAAGTGTAGAAGTGTTCAAACACCAGCCATAAACAATAGAGTGGACATCAtttgtaaaatactgtaaaagaAGATGGACTGTAGGATGGCGTGACATTCAAAATGAGGGTTTATGTGACTCTCATTGGCACCATCAAGTGTTAAGACTAATACTTTCCAGAGAAACTGgagctgtgtaaaaaaaaaaaaaagggctggTCCACTGGCTAGTTGAAGCTTTTTCATCAAATGAGCCAAATAgccatttttatattattattatattgcagATTTGTGATATGGACTATCATTAAGAACAGGGAAGTGAGAGAAATCATACTTTCAACATTCTTTGCTATTTGAAAGTGTTTACATTGTTAAGACAACAATTGTAAGTAACTTGACATTGTGTTCATAGATGGAGCTAATAGAAAGCATCATACATTATACATGCATACATTACACATGCGTTCATACATTATGCATAAATCAATAAGTAACATCATTCCCTTTGAAATATGTGAATATCAAAAGAAGTGGCTGGGACATGCTGATCTATTCTTGCATAATGCACTCTCTGTGCAGCCTAAATTCACACACAGTACTAGTTTTTAACTACTAGTGATTGATGATACGGTACACACTCGCAAAGCTGACCTGTGTGTTGCTTGCATGAATTTGCACTAATTTTAAGGAAGcctgttaaattattttcaaatggATGTGTGCATTTGTATGCAATTTCGGAACC

Function

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 3A1-like

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K07809 HS3ST3; [heparan sulfate]-glucosamine 3-sulfotransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915891.2 True 2516 mRNA 0.48 2 8927805 8940831

Neighbor

gene id symbol gene type direction distance location
dhrs7cb dhrs7c,LOC107720435,LOC107653938 coding upstream 21415 8899010 ~ 8906390 (+)
bsk146 bsk146,LOC108273750,LOC107653993,LOC107719718,LOC108424854,LOC791840 coding upstream 81124 8836049 ~ 8846681 (+)
wu:fj29h11 LOC108273747 coding upstream 93349 8791190 ~ 8834456 (+)
LOC113527546 LOC108274314,LOC108413941,LOC108443187 coding upstream 138062 8786292 ~ 8789743 (+)
si:ch211-176g6.2 LOC108274352 coding upstream 146960 8754318 ~ 8780845 (+)
LOC113527204 glp2r coding downstream 72822 9013653 ~ 9025559 (+)
pts pts,LOC107081163 coding downstream 89421 9030252 ~ 9035170 (+)
LOC113527360 LOC108274022,LOC108424857,LOC105888776,LOC107653912 coding downstream 99993 9040824 ~ 9090546 (+)
trnaa-ugc_7 NA coding downstream 166855 9107686 ~ 9107757 (+)
trnal-aag_6 NA coding downstream 167021 9107852 ~ 9107933 (+)
G192858 NA non-coding upstream 9560 8918040 ~ 8918245 (+)
LOC117598667 NA non-coding upstream 326035 8596654 ~ 8601770 (+)
G192760 NA non-coding upstream 411871 8514382 ~ 8515934 (+)
G192737 NA non-coding upstream 539688 8310878 ~ 8388117 (+)
G192716 NA non-coding upstream 657579 8269148 ~ 8270226 (+)
G193170 NA non-coding downstream 116568 9057399 ~ 9093247 (+)
G193169 NA non-coding downstream 217328 9158159 ~ 9158568 (+)
G193168 NA non-coding downstream 218602 9159433 ~ 9184089 (+)
G193386 NA non-coding downstream 438442 9379273 ~ 9380115 (+)
G193390 NA non-coding downstream 445312 9386143 ~ 9386394 (+)
G192484 ank3 other upstream 1299694 7605981 ~ 7628111 (+)
tfam tfam other upstream 1491433 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 2091422 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 2199414 6725321 ~ 6728391 (+)
G191581 NA other upstream 2944568 5969743 ~ 5983237 (+)
LOC113527534 dnah9 other downstream 327662 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 427412 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 571338 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 571729 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 571953 9512784 ~ 9515616 (+)

Expression


Co-expression Network