tubgcp2 (tubgcp2,gcp2,LOC106589265)


Basic Information

Item Value
gene id tubgcp2
gene name tubgcp2,gcp2,LOC106589265
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8312121 ~ 8324525 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915893.2
ttttgtaatgctGGTTGTTTTGGCGGGTCcgtctgaaaaagaaaaaaaatacctaGCTGTTTGTTTCTAACTTCACATTAGCGATGTTAATGTTGTTAAGAAATTAGCCACAACGCTTCTACAACTGTGGAAGGATAAAGTGAAGCCATGAGTGAGTTCAGGATCCACCACGATGTGAACGAGTTGCTCAGCCTCCTTCATGTCAGAGGAGGTGATGGGGCTGAGGTGTACATTGACTTACTGCAGAAGAATAGGACTCCTTATGTTACCACCACAGTCTCTGCACACAGTGCTAAGGTGAAGATTGCAGAGCACTCTAAAACACCCGAGGACTTTTTGAGGAAATATGAAGAGCTGAAGTCCAAAAATGCACGCAACTTGGATCCTCTGGTTTATCTTCTCTCAAAGCTCACTGAAGATAAGGAGACTCTGAAATTTCTGCAGCAAAATGCTAAGGAGAGATCAGAGATGTCAGCGAACGCGACATCAAGCAGCACGACATCCTTCAGTATTCCCCCAACCAGTAGCAAGATGTCAatgcaggagctggaggaacTGCGCAAAAAACTCGGGAATGTCACAGCCAGCTCCAACGTTCCACAGTCTGCTGAGGTCACCCGCAAGCTGCTaagagacagacacaacaaGAAGAACCCCACACAGCCTATTCCTGTCTTCCCAAACTGGGTGTATGACAGACCTGCACTGATCGGAGATTTTATCACTAGCTCTGCACCAATGGGAGATCCAGTCGTGGCTATCGGTACAATGCCGCTGACCGTGCAGGAGCAAGCTCTGGTTGAGGACCTGCTGTATGTGCTGATTGGTGTGGATGGGCGAGACATCACAGCACAGCCTGTACTCGGCAGACAGAGTCGCTCTTTTATAGTAGACCCTTCTCTGGACATGTCCATTAAGGAGCTTGTGAACCGGATATTACCAGTGGCATCCTGTTACTCCACTGTCACACGCTTCACAGAGGAGAAGTGTTCCTTTGAGTATGGTCAGGTGAACCACGCGCTCACTGCGGCCATGAGGACACTGATGAAGGAGTATCTCATCCTGGTGACCCAGCTAGAGCATCTTCACAGGCAGGGCATGCTCTCCCTACAGAAGCTCTGGTTCTACATCCAGCCCACCATGCGCACTATCGAGGTTCTAGCCTCCATCGccaGTTCAGTGGACAAAGGAGACTGCATGGGTGGCTCAACGTTAAGTCTGCTTCATGATCGCACCTTCAACTACACTGGGGACAGCCAAGCCCAAGAGCTGTGCCTCTATCTCACTAAAGCAGCCAGTGTCCCGTACTTTGAGATGCTGGAGAAGTGGATCTACCGGGGAATCATCAAAGATCCATACGGTGAGTTCATGGTTGAGGAACACGAGCTTCAGAAAGAGAAGATCCAGGAGGACTATAACGACAAATACTGGGATCAGAGATACACCATTGTGCAGCACAAAATCCCATCTTTCCTTCAAAAAATGGCAGATAAAATACTAAGTACAGGGAAGTACCTGAACGTTGTGAGGGAGTGTGGGCGAGACGTGACCTGTCCAGATGCAAAGGAGGTTCTCTACACTTTAAAAGAGAGGGCATATGTGGAGCAAATTGAGAAAGCCTACAACTATGCCAGTAAGGTTCTCCTGGACTTTCTTATGGAGGAGAAGGAGCTGGTGTCTCGGCTCAGATCCATCAAGCACTACTTTCTGATGGACAAGGGAGACTTCTTTGTGcacttcatggacctcactgaAGAGGAGCTGAAGAAACCTGTTGATGACATCATCCCTTCTCGCTTAGAGGCACTGCTGGAGCTGGCTCTGAGAACAAGCACAGCCAACACAGACCCCTTCAAAGATGATCTGAAGATTGACCTGATGCCCCATGATGTCATTACTCAGCTGCTGCGCGTCTTGGCCATAGAGACTAAGCAGGAAAAAGCTATCATCAACGCCGACCCCACCGAGGTGGCCCTCAGTGGCCTCGAGGCTTTCTCTTTCGACTACATTGTTAAATGGCCGCTGTCACTTATAATCAACCGGAAAGCACTGACAAGATATCAGATGCTGTTCAGACACATGTTTTATTGCAAGCATGTCGAGAGGCTGCTCTGCAATGTTTGGATCAGCAACAAGTCGGCCAAGCAGTACTCCCTACACTCTGCTAAATGGTTTGCTGGTGCATTTGCTCTCAGGCAGCGCATGCTAAACTTTGTACAGAACATCCAGTACTACATGATGTTCGAGGTCATGGAGCCGACATGGCACATCATGGAGAACAACCTGAAATCGGCGTCCAATATTGACGATGTTCTTTGCCATCACACCAGTTTCTTGGATAACTGTCTGAAAGACTGCATGCTGACCAACCCTGAACTGCTGAGGATTTTTTCCAAGCTCATGTCTGTGTGCGTCATGTACACCAACTGCATGCAGCGATTCATGCAGAGCATGAGGATGGACAGTGAGATAAACCGATTAACTCTGGAACATGGCACCATGGAGGGTCCTCCAACACAGAGCGAACGCACTGAGGAGGCTGAGAAGAAAAGACTGGCCTCCAAGTTTTTAGCTGAGCATGTTGATTCCCTGCAGTCAGACTCAGGCTTTGAAGGCACCATCAGTAAGTTTGACAGTAACTTCAGCACACTGTTATTGGACCTATTGGACAAGCTGAGCATTTACAGCACCAATGACTGTGAGCACAGCATGATCAACATCATCTACAGGCTTGACTTTAACGGGTTCTACACTGAGCGTCTGGAGCGAATGGCGATTGAGCGGGGTCAGAAGGCTGCCACGTAACACTCTCCTACACAAGAACCTTCATAAAGTACACATCAGGCAGCAATAAGGGGCCTAATGGCATGTTCTGCTCCTTacaattatgtttaaaatgaacacgCTGTACCCATCACATTACCTAAAAGTCTATTCAGAAGAGTTTTACCGTACATTTAAATAACAGCTCGGCCATGGCTGAGTAGTTCGATGTGTCTTTATTCTTCCACAGGACATGTAGCAGTGTTGTGTTGTAATATAAGCAATTCTTTAAGAAATATTGCATTCTAACAAAATGAGCAGTGTTTgtgatgtttgtttttcattactGATTCGTTTCTTTTAACGCTCAACccaataaacaccagtgttATTGTTGTAAA
>XM_034309618.1
TTTTGCGTGTCTTTAGCTGTACTTTTtgctaaaaatgacaaattattaGCATCAACAGTATAGCATATAGCAACGCTATAGCATAGACCTGACTTAGTTTACTGTTGGTGTTTGGTAGCCATGAACCATTGCTGGGTTACGGAAGGATAAAGTGAAGCCATGAGTGAGTTCAGGATCCACCACGATGTGAACGAGTTGCTCAGCCTCCTTCATGTCAGAGGAGGTGATGGGGCTGAGGTGTACATTGACTTACTGCAGAAGAATAGGACTCCTTATGTTACCACCACAGTCTCTGCACACAGTGCTAAGGTGAAGATTGCAGAGCACTCTAAAACACCCGAGGACTTTTTGAGGAAATATGAAGAGCTGAAGTCCAAAAATGCACGCAACTTGGATCCTCTGGTTTATCTTCTCTCAAAGCTCACTGAAGATAAGGAGACTCTGAAATTTCTGCAGCAAAATGCTAAGGAGAGATCAGAGATGTCAGCGAACGCGACATCAAGCAGCACGACATCCTTCAGTATTCCCCCAACCAGTAGCAAGATGTCAatgcaggagctggaggaacTGCGCAAAAAACTCGGGAATGTCACAGCCAGCTCCAACGTTCCACAGTCTGCTGAGGTCACCCGCAAGCTGCTaagagacagacacaacaaGAAGAACCCCACACAGCCTATTCCTGTCTTCCCAAACTGGGTGTATGACAGACCTGCACTGATCGGAGATTTTATCACTAGCTCTGCACCAATGGGAGATCCAGTCGTGGCTATCGGTACAATGCCGCTGACCGTGCAGGAGCAAGCTCTGGTTGAGGACCTGCTGTATGTGCTGATTGGTGTGGATGGGCGAGACATCACAGCACAGCCTGTACTCGGCAGACAGAGTCGCTCTTTTATAGTAGACCCTTCTCTGGACATGTCCATTAAGGAGCTTGTGAACCGGATATTACCAGTGGCATCCTGTTACTCCACTGTCACACGCTTCACAGAGGAGAAGTGTTCCTTTGAGTATGGTCAGGTGAACCACGCGCTCACTGCGGCCATGAGGACACTGATGAAGGAGTATCTCATCCTGGTGACCCAGCTAGAGCATCTTCACAGGCAGGGCATGCTCTCCCTACAGAAGCTCTGGTTCTACATCCAGCCCACCATGCGCACTATCGAGGTTCTAGCCTCCATCGccaGTTCAGTGGACAAAGGAGACTGCATGGGTGGCTCAACGTTAAGTCTGCTTCATGATCGCACCTTCAACTACACTGGGGACAGCCAAGCCCAAGAGCTGTGCCTCTATCTCACTAAAGCAGCCAGTGTCCCGTACTTTGAGATGCTGGAGAAGTGGATCTACCGGGGAATCATCAAAGATCCATACGGTGAGTTCATGGTTGAGGAACACGAGCTTCAGAAAGAGAAGATCCAGGAGGACTATAACGACAAATACTGGGATCAGAGATACACCATTGTGCAGCACAAAATCCCATCTTTCCTTCAAAAAATGGCAGATAAAATACTAAGTACAGGGAAGTACCTGAACGTTGTGAGGGAGTGTGGGCGAGACGTGACCTGTCCAGATGCAAAGGAGGTTCTCTACACTTTAAAAGAGAGGGCATATGTGGAGCAAATTGAGAAAGCCTACAACTATGCCAGTAAGGTTCTCCTGGACTTTCTTATGGAGGAGAAGGAGCTGGTGTCTCGGCTCAGATCCATCAAGCACTACTTTCTGATGGACAAGGGAGACTTCTTTGTGcacttcatggacctcactgaAGAGGAGCTGAAGAAACCTGTTGATGACATCATCCCTTCTCGCTTAGAGGCACTGCTGGAGCTGGCTCTGAGAACAAGCACAGCCAACACAGACCCCTTCAAAGATGATCTGAAGATTGACCTGATGCCCCATGATGTCATTACTCAGCTGCTGCGCGTCTTGGCCATAGAGACTAAGCAGGAAAAAGCTATCATCAACGCCGACCCCACCGAGGTGGCCCTCAGTGGCCTCGAGGCTTTCTCTTTCGACTACATTGTTAAATGGCCGCTGTCACTTATAATCAACCGGAAAGCACTGACAAGATATCAGATGCTGTTCAGACACATGTTTTATTGCAAGCATGTCGAGAGGCTGCTCTGCAATGTTTGGATCAGCAACAAGTCGGCCAAGCAGTACTCCCTACACTCTGCTAAATGGTTTGCTGGTGCATTTGCTCTCAGGCAGCGCATGCTAAACTTTGTACAGAACATCCAGTACTACATGATGTTCGAGGTCATGGAGCCGACATGGCACATCATGGAGAACAACCTGAAATCGGCGTCCAATATTGACGATGTTCTTTGCCATCACACCAGTTTCTTGGATAACTGTCTGAAAGACTGCATGCTGACCAACCCTGAACTGCTGAGGATTTTTTCCAAGCTCATGTCTGTGTGCGTCATGTACACCAACTGCATGCAGCGATTCATGCAGAGCATGAGGATGGACAGTGAGATAAACCGATTAACTCTGGAACATGGCACCATGGAGGGTCCTCCAACACAGAGCGAACGCACTGAGGAGGCTGAGAAGAAAAGACTGGCCTCCAAGTTTTTAGCTGAGCATGTTGATTCCCTGCAGTCAGACTCAGGCTTTGAAGGCACCATCAGTAAGTTTGACAGTAACTTCAGCACACTGTTATTGGACCTATTGGACAAGCTGAGCATTTACAGCACCAATGACTGTGAGCACAGCATGATCAACATCATCTACAGGCTTGACTTTAACGGGTTCTACACTGAGCGTCTGGAGCGAATGGCGATTGAGCGGGGTCAGAAGGCTGCCACGTAACACTCTCCTACACAAGAACCTTCATAAAGTACACATCAGGCAGCAATAAGGGGCCTAATGGCATGTTCTGCTCCTTacaattatgtttaaaatgaacacgCTGTACCCATCACATTACCTAAAAGTCTATTCAGAAGAGTTTTACCGTACATTTAAATAACAGCTCGGCCATGGCTGAGTAGTTCGATGTGTCTTTATTCTTCCACAGGACATGTAGCAGTGTTGTGTTGTAATATAAGCAATTCTTTAAGAAATATTGCATTCTAACAAAATGAGCAGTGTTTgtgatgtttgtttttcattactGATTCGTTTCTTTTAACGCTCAACccaataaacaccagtgttATTGTTGTAAA

Function

symbol description
tubgcp2 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin small complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP2 (tubulin gamma complex associated protein 2).
gcp2 gamma-tubulin complex component 2

NR:

description
PREDICTED: gamma-tubulin complex component 2

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16569 TUBGCP2, GCP2; gamma-tubulin complex component 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915893.2 False 3164 mRNA 0.47 18 8312121 8324525
XM_034309618.1 True 3176 mRNA 0.47 18 8312260 8324525

Neighbor

gene id symbol gene type direction distance location
reep3b reep3,LOC108412837 coding upstream 134922 8149279 ~ 8177199 (+)
nrbf2b nrbf2 coding upstream 292907 8011864 ~ 8019214 (+)
adoa ado coding upstream 334953 7974219 ~ 7977168 (+)
arid5b arid5b,LOC107727057 coding upstream 373507 7852411 ~ 7938614 (+)
cabcoco1 c13h10orf107 coding upstream 473695 7812450 ~ 7838426 (+)
myof myof coding downstream 1627 8326152 ~ 8358172 (+)
zgc:152977 sun1 coding downstream 34898 8359423 ~ 8393594 (+)
LOC117595680 rac1,RAC1,LOC108273830,LOC108437155,LOC105898786,LOC108412270 coding downstream 71308 8395833 ~ 8401469 (+)
LOC113527453 LOC101159016,LOC101485652,LOC100697553,LOC103373537,LOC107376513,LOC108239271 coding downstream 83604 8408129 ~ 8413358 (+)
LOC113527454 rac1,RAC1,LOC105898786,LOC106601744,LOC108437155,LOC107569188,LOC105026138 coding downstream 99771 8424296 ~ 8431581 (+)
G192716 NA non-coding upstream 41895 8269148 ~ 8270226 (+)
LOC117598703 NA non-coding upstream 50698 8259214 ~ 8261423 (+)
G192644 NA non-coding upstream 171061 8126773 ~ 8141060 (+)
G192650 NA non-coding upstream 240529 8069143 ~ 8071592 (+)
G192591 NA non-coding upstream 372537 7939041 ~ 7939584 (+)
G192760 NA non-coding downstream 189857 8514382 ~ 8515934 (+)
LOC117598667 NA non-coding downstream 272129 8596654 ~ 8601770 (+)
G192858 NA non-coding downstream 593515 8918040 ~ 8918245 (+)
G193170 NA non-coding downstream 732874 9057399 ~ 9093247 (+)
G193169 NA non-coding downstream 833634 9158159 ~ 9158568 (+)
G192484 ank3 other upstream 684010 7605981 ~ 7628111 (+)
tfam tfam other upstream 875749 7428545 ~ 7436372 (+)
asah2 asah2,LOC107598643 other upstream 1475738 6822740 ~ 6836383 (+)
LOC113527389 NA other upstream 1583730 6725321 ~ 6728391 (+)
G191581 NA other upstream 2328884 5969743 ~ 5983237 (+)
LOC113527534 dnah9 other downstream 943968 9268493 ~ 9357961 (+)
G193383 LOC108273473 other downstream 1043718 9368243 ~ 9369915 (+)
trnaq-cug_13 NA other downstream 1187644 9512169 ~ 9512401 (+)
trnaq-cug_14 NA other downstream 1188035 9512560 ~ 9512631 (+)
mrpl58 mrpl58 other downstream 1188259 9512784 ~ 9515616 (+)

Expression


Co-expression Network