socs3b (socs3b,LOC108274104,LOC108426520,LOC107755481,LOC107601442,LOC107690914,LOC107581599,LOC107684082,LOC107722230)


Basic Information

Item Value
gene id socs3b
gene name socs3b,LOC108274104,LOC108426520,LOC107755481,LOC107601442,LOC107690914,LOC107581599,LOC107684082,LOC107722230
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13992223 ~ 13996169 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915894.2
AGAGAAGAGGGGGAAGGGAGGAGTGTGAATACCAGGAATCGTCTCGTAGAAAAAAGGTCACGCTGATTATTTATGGGCAATCCGccaagtgagtgagagaaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgcttaCTGGAAGGCAGGGGTGGAGCCGTTCAGAAATATCAGTGGGCTCCCTCTCTGTGAAGAGAGCAAGACTTCCACTACCCCTCATCAGGGGGAGTCATGAGAACGAtatcacacactctacacacactcttctgcCATAAACCCGCTTCCCGACAGCACCACTTTTAACAGCTCATTTCCCAGGGTTTGAAAAGGAGCCCtccagaagagagagagagagggagagggagagggagggagagacgTCCGGTTAAACACCACTACAAGACTGACTCTTTTAAGACTTTCAAGCTGCATCCCATACCCATTGAGCCGTCTTTGATTCTGGATGTTGAGGAGGAGCCGGAGCTGTGGGCATTGTGTTGGTGCTGCGTGGTGCCTGTGCACCCTGGCTGGGACGAGCCCGCGGCCCTGGACCCCCAAGCCGGGACGGGGCACGGGCAGAGCGCCATGGTAACGCACAGCAGGCTCGACAGCGCCATGAGCAGCAGCCCCTTCCAAGGCGGAGTAAGCCTGCCTGCCCACCGCTACAAGACCTTCAGCTCCAGGGCACAGTATCAGATGGTGCTGGCGGCTGTGCGCAAGCTGCAGGAGAGTGGCTTCTACTGGGACGCTGTGAGTGGGAAGGAGGCCAGCGCCCTGCTGAGCACTGAGCCACCCGGCACTTTCCTGGTGCGTGACAGCTCTGACAACCGCCACTTTTTCACCTTAAGCGTCAAGACAGCCACGGGCACCAAGAATCTGCGCATCCAATGTGACGCCTGCTCCTTCTTTTTGCAAACGGACCCGCGCAGCTTGCAAACTGTTCCACGTTTTGATTGTGTGCTGAAACTCATTCATCATTACATGCCCTCTGCCAGAGAAACGGGGGCTGTGGTCTCATCTGGAGTGGACAGTGAAGGTGGCAGCAGTGGAGCAGATGGGAGTACCTACTTCATTTACTCTGGAGGAGAGAAAATCCCACTGGAGCTGCTGCGCCCTCTGGCCTCCAGCATGTCCACACTGCAGCATCTCTGCCGCAAGACACTTAACGGCCACATAGATGTGTCTAGTAAACGGGACCAGCTGCCTCAGTCGCTCCAGGAGTTCCTTGAGGAGTATGATGCACCCATATAACAACCATCACATGGTTCTGGAGCACAGAGACTGAACAAGATATACAGAACTGTATGATGAGCAGTGGTGGAATTGACCAGCAAAAGCCCACAGGAAGATGGAGAGCAGTGCAGTGTTACAAAGCTCTGGAGTTCAATAAGTGTAAGAGTTGTCTGCTCTGAGAAGCTCTCAGCTTCTATCAGTATTGCAGGCCAGCTTTGGCCTACTGTGCCTTCACCCTCTATAGTGTGACCTTTGGCAGGGGGTTGCTGTTTGATGGACAGCACAAAGTATGGACTCGCATGCAATGGGATGAACAGCAGAGCAGCCAGGACCGAAAGCAGATGATCAGAGGCATTCTGCTTTAGCCTCGTATTTTTGGAGTCTGTTCTTGggtctgttttaaaaaaaaaaaaacacaaaccctGTTGAATATTAACACAGTTGATAGGTTATCAGTACAAGGGTTGAATGTGCTGCTATGGCTGAGTTGCAGCCTTTGCTATATGAATATAAAGCTCTCTCACACAGTTTCATCCCCAGTTGACACACTGACTGTTGAAAGAAGAGTTTTGGATGTCTGTGTTTGAGGGAGTGCCTAGTGTCGGCTGTTTGAAATGACATATATATTTCCACTGCGGGCTGCCAAGCATAATTGCCTCATAGGCTGATGTGGGGAAGTAAACGGGGCGGCTACTCACTACTGGCACCGCTGTGTCAACACTGGCAACTGTGCGGGGTCACAACACAGGACTGATGTTTAAAAGTGCATCAATACAAAGGATCAAAGTAGACAAGAGAGGCCTCTGATGTTACAGCAGTCTCAGAAGGAAAGCTTAGTGGACTGTTGTAGCTTTATTTTTGACAGGCAAAGTGTCTCAGTTTTGCTGGGAAATGCCAGATCATTATAGAACATTCAACATGCTGGTGATGATATTACAATACAACACAAACTTCCAAGAGTTGACAGTTCATGTACTGTGAAACAAAGCCAAGCACAGTATGCAAAATCCTTATTTACCAATCCTGGAGTTTGACATGGAGGATCGTGTTCCTCTCAAATCAGAGGCGTTCCTTCTGTATGCGCTAAGAAGTAATCAGTCATGCCTCATATCCCTCATTCAGTAACAATGACGTAGTGTTTCTTCAGCAACACACGCTGTCTACAATTAAATGAATGTATTGTAAGTCAGTGGAAGGGCTTATGGTTCAACTTGTTATTCTTTTCTcgcttttttgtattttgtcaaataGAGACGATGTTTACATGTGTCACCACAAGAGGACAACATGTTTTTTGTACTCTGTCTTTTATAAAGATTTGGCATCTTAAGGTCTAGTCTAATGACCCACAGTGCAAGCTTGAAAATCAGAAAACCTGAAAACAATGGCATTACAACAGAAAATGCAGCAAGGAACTttgcacatatttatatttataaaatatttcgataatttatattaaagagTACTATTTTTACAAAATGGATCTTGTGTGCCTTAACTTTTGTTCAGTCTGTTACTACATTATTacatgcacattttaaaaaagtacttcACATACTTCCCATTTACTACTcatgacacacacaggcacacacagtgataaataTACCACATTACCTCTCTCTATGATACACAAAGGACTGAGGCTCACTTCATTCCTTCATGTTTCACGCCTGTGGATGTCACCTTGTACGTTCTGTTCAGCTCAAAGCAATGAGAATGATAATTTAATGTGAAAAcattcaaatataaatttaacTATTATTATGCATACCATGAAATGAGAGTATGAAATGGGCTTAATTTACTCTTGTGTTTAGAGGCCATAGAGATTCTGTATAGCATTAGATCTAAGCATGAGACTCCAATTCTGGGCTCTTAATGTTTCATTGATTACCAATTCTTTGACTGATTATTTTGCACTGTAAGTAAAAGCTGTTATTAAACCTC

Function

symbol description
socs3b Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within several processes, including intracellular signal transduction; negative regulation of apoptotic process; and receptor signaling pathway via JAK-STAT. Predicted to be part of phosphatidylinositol 3-kinase complex. Is expressed in eye; heart; lateral line ganglion; and segmental plate. Human ortholog(s) of this gene implicated in atopic dermatitis 4. Orthologous to human SOCS3 (suppressor of cytokine signaling 3).

NR:

description
PREDICTED: suppressor of cytokine signaling 3

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04696 SOCS3, CIS3; suppressor of cytokine signaling 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915894.2 True 3199 mRNA 0.46 2 13992223 13996169

Neighbor

gene id symbol gene type direction distance location
LOC113527468 dnah17 coding upstream 17630 13933904 ~ 13974593 (+)
cyth1b LOC108274176,LOC108426518,LOC103022618,LOC107755486,LOC107690912 coding upstream 58804 13888509 ~ 13933419 (+)
sfxn2 sfxn2,LOC107755483,LOC107722238 coding upstream 121219 13861384 ~ 13871004 (+)
trim8b trim8,trim8b,LOC107581594,LOC107684075,LOC107565801 coding upstream 143544 13837408 ~ 13848679 (+)
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107690908,LOC107755491,LOC106579271 coding upstream 155853 13826107 ~ 13836370 (+)
slc38a10 slc38a10 coding downstream 212730 14208899 ~ 14233287 (+)
tepsin tepsin,LOC105892758 coding downstream 241223 14237392 ~ 14246149 (+)
si:dkey-21c1.4 LOC108273792 coding downstream 254296 14250465 ~ 14253655 (+)
tbcc tbcc coding downstream 269177 14265346 ~ 14266594 (+)
prph2a prph2,prph2a,LOC107581607,LOC107601435,LOC107684088 coding downstream 272507 14268676 ~ 14271524 (+)
G195994 NA non-coding upstream 296462 13693715 ~ 13695761 (+)
G195857 NA non-coding upstream 373284 13618664 ~ 13618939 (+)
G195847 NA non-coding upstream 474337 13514676 ~ 13517886 (+)
G195839 NA non-coding upstream 525240 13466765 ~ 13466983 (+)
LOC113527319 NA non-coding upstream 925601 13063864 ~ 13066622 (+)
G196202 NA non-coding downstream 27418 14023587 ~ 14043932 (+)
G196265 NA non-coding downstream 130349 14126518 ~ 14127031 (+)
G196289 NA non-coding downstream 167402 14163571 ~ 14166015 (+)
G196292 NA non-coding downstream 173139 14169308 ~ 14169812 (+)
G196291 NA non-coding downstream 177121 14173290 ~ 14173773 (+)
tcf7l2 tcf7l2 other upstream 433138 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 970228 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1518240 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1906864 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 2370954 11613899 ~ 11621269 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 17404 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 291190 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 2859520 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3549624 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 4158976 18155145 ~ 18160086 (+)

Expression


Co-expression Network