c12h10orf90 (LOC108273407)


Basic Information

Item Value
gene id c12h10orf90
gene name LOC108273407
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19694398 ~ 19719754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915899.2
aagaaacacacaacagCTTTCAAGGCGAAGTATCTAAgccaaaaaaagagaagaagccGGTTTACACACCGTGGTAGATATGGAGCTTTTCTGTAAGTCTTTTGTTCACTCTGAGCAACATGCATAGTCATACTCATGCTTGACTGGAGACAGCACCACCAGCAGCTCTtcttcagagagaaagagaaagagagagagactgacagaaagggagagagtCTAATAGCGGTGTCCTTCCTAATATTTCCACTGAAGACGTGTTGGAGCAGTTAGATGCTTCCTTTGCATCTAATAACACCGCAGATTGATCTGTTCTCTCCGGGACTACCACACAATTAGCATTCCTGTTTCTCAGAGTTAGAGTCGAAGGAGTTTTTTTCAGATCACAGCCCAAATACTTTTTACCTCCCAGGCGGTTACCGGGGCATCCGAACAgaattgtcctgtgtatttgtgcattttgtgtaaAGGAATCCTTATGGATGTAAAATCCGAAAGCTGGAGACGACAACCTATGCCTCGGAGTCAAGCTGGACAGGACAGCATGTCTCACATAGCATGGAGGAGATCTGGAGATGAAAGTTCCTGGGATAGGCCTCCTCGTGCAGCTCGTCCGCACAGCTGTATTGAAGGCAGACTGAAGGATGAGTGGCTCCAAACATTTAACACTCTACAGACTACTGACATTCATCAGCAGCTGCCTCCTTACCTCCAGAAGAATGACACACCTCGGAGTGTAAGCCCCAGTTTGGTGGCACGCTCTCTGAGCAGTCTGGAGTCTCTATATTCTGGACTGGAGAGCAAAGAAAGGGTTCAAATTAAGACAGGACCGAGTACTCAGAGAGCAAAGGTGTGCTGCCTCGCTCCAGTTCGGATTGGATGGCTGCCCTTACAGAGATATGTGGTGAGGAAGGAGAGGCCGAATAATGCAGATCAACAGGATGGCACCACCTGCAAGgTGAAGCTGAAGCCGCCTATCACCCCTGTATTAAGCTGCAGTTCTGTCAAAGCAAATGGATCAGAGCCAGCAGacggGACTGCTGGACTTGGGGTCAGAGGAATGTCTGGAGCATTCTCTCTACAGGCTGATGATAAAAGAAAGGCCACTCTAGCAGAAAGAGATCAGGACACAGCACTTTATCGGGCCACCAGCGTGCAGAACACATCCCGTGAGAGATTTCTGTGGCAAACCCCAGTGCACAGGAGAGGGAGCGTTCCCCAGGCATCTCTACTCACAGCACCCCCTGTAGGTGGAAGAACGACTCCCAAACACAGCAGCTCTATATCCTCTATCACAATCACCTCCAGGAAGGTCATCCGTTCTGCAAGCCTGCCTGATACTAGCATATCTGGCCAGGATAGAGACAGGGAAGCCAGTCCTATGGCCCTAAACAACCACATCATTGACCCAGATTATACGAACACTCTATGCCCGGCAGAGGTCATTCCACGGAGGAAAGCCCTTGTGGTCAAAATTACTGAGCAACGAGTAGAGACCAGTAGATTTCTGCAGCCAGGTGCTAAAAATGGTCCAGTCTATAGTTTCCCCTCAAGTAAGACTATTGGAGAAAACTATTTCTCATGCCTCTCCACTAGAAGGAGCTCTGATCTTGCAGCTTCTAATCTCTCCAGCGTGAAGAACCACCCCTTACTAGCTTCCTTAAGTGTGACTGGTGGAGATATGTCAAAAATGACCCAAAAAGTGGAAAGTCAATCTCAAGTCCCCTCTTGCCTAGCCACCCAAGAAACCCAGACGCCAGTGGTGCTTCGGAGGAAAGCCACCATTATCAAGGTGCAGGAGCATAGAGATACCTTCAGCAAAAAGGATGAGGACCATAGAAGGAAAGTGGCCTACAGGCACAGCTTCAGTGGCCTCAACGTCACTGACATGAAACCACAATTAAACAATGAATGCATGTTTTCTGGATCTGAGATGCAAGTTGTTAGTAGCAAGACCAAACTATACAAATCCACAATGTCCCTCCAGCTGACATCCTCCAGTGGACCTCGTCTGGATGACTCACACACTTCAAGAGGTTCCCAGCCCCGGAGGCCTGCTAGTTGTTATGCTAGTCTGTTTAGCCCTGTTGAGCCAAATGCTGATGGTTCACAAGATGCTGCAGTTCACAGCACCATTTCTGTGCTTCCCCACGAGACAAATATTGACCCTGCTTGCTCCGCTGCCAGCAGCTCAAACAGGTGTTGGAGCACTGAAGGAGGAGCAGGGAGCCATGACAAGATTTATCCAAGTACAGAGAGCTCTGCTTCAGATAAAGggcagagcaagagagagtCTGCTCTCCCGAGGAACCAGCCTTTAACTCTCATCAAAGTACCAGAAAGCTCAACCCATGAGACCCACGATGCTATAGTGGCCTGGAATGCAGCTGCCATTATAGCCAATATAAAGCTGCAGAGtgagcagaagaagaaaaccCAGACCAATGGCAACACCAGTGGAGGGAGAGACTCCACATCCCAGAGCAAAACTGCAGGGGCCAGAGCTGATAAAGCAAATATTGCTGAGCAGAGTGGAACAGCTTCCTGTCCTGTGGAGAGTGAGACAGCAGCACATATGAAGCTGTTGACCAAACATGCAGAGTTTGCTCCAGTTGTGACCGCTGATGACTTATTATCACGTTCTCACACACACGGTGACAGTGTCAGTCTCAGGCACAAGAGAGACACctgctcaacacacacaaacaccaacactatCACCAACTATCCGCTCAGGGACAGAGAgAAGGTTTTGGATCTGGTTCTGAATAGAGGGAAAGACTGAAACAGTGGGAGAGAGGTTAATGAGCTCATTTTGCTGCTGTCTGTCCGGTCTGTGCCAGCGCACTGAAGCTCCCCGAAGACTCTCCCTCATCCTCACGCTGCAAGCACAACGACTCCAATAACACAATGCATTTCACTAATGAAAATACTCTACATTTATCAAATGACTTCTTTATTAGTGATTACTGATTACCGAGATTAACCTTGCTGAATGTAAGAGCAGGAAATTTACTAAAGTGTGCTACATTGAGGACATTTCAGACTATAGCTGGACATCACAGTTAATGTGTGCCTTAAAGTATTTTAAGTTAGTagcatcaaataaaatattaaatatgactcATTTTCTATcagctttttaaaatcctgtgatatatatactgtatatcagtttACTTTTTAACTGTGGCTATGAAACTTCTTCATACAGCAATATCATGAAGTCTCCCGTAACCTTTAAAGTGCAGGATTTCTGagtttaaaaagtgttaaatgatCCTAGCAAATTGCTGGTGTCATTATATGAAATACACACAGTGACATTTATCACTGCaagcttttatgtttttttttttttttgccaaattggCTGTCCATGGTGCAGTCatgatattaaaatgatttaatatttaattgctcctaaatgttaaatgaccAATTGACCTTATCTGTGTATAATATAGTGCATGGACTGAATGTGATTAAAGCAAACGAAGAGTTTTGTATTCTA
>XM_026915900.2
aagaaacacacaacagCTTTCAAGGCGAAGTATCTAAgccaaaaaaagagaagaagccGGTTTACACACCGTGGTAGATATGGAGCTTTTCTGTAAGTCTTTTGTTCACTCTGAGCAACATGCATAGTCATACTCATGCTTGACTGGAGACAGCACCACCAGCAGCTCTtcttcagagagaaagagaaagagagagagactgacagaaagggagagagtCTAATAGCGGTGTCCTTCCTAATATTTCCACTGAAGACGTGTTGGAGCAGTTAGATGCTTCCTTTGCATCTAATAACACCGCAGATTGATCTGTTCTCTCCGGGACTACCACACAATTAGCATTCCTGTTTCTCAGAGTTAGAGTCGAAGGAGTTTTTTTCAGATCACAGCCCAAATACTTTTTACCTCCCAGGCGGTTACCGGGGCATCCGAACAgaattgtcctgtgtatttgtgcattttgtgtaaAGGAATCCTTATGGATGTAAAATCCGAAAGCTGGAGACGACAACCTATGCCTCGGAGTCAAGCTGGACAGGACAGCATGTCTCACATAGCATGGAGGAGATCTGGAGATGAAAGTTCCTGGGATAGGCCTCCTCGTGCAGCTCGTCCGCACAGCTGTATTGAAGGCAGACTGAAGGATGAGTGGCTCCAAACATTTAACACTCTACAGACTACTGACATTCATCAGCAGCTGCCTCCTTACCTCCAGAAGAATGACACACCTCGGAGTGTAAGCCCCAGTTTGGTGGCACGCTCTCTGAGCAGTCTGGAGTCTCTATATTCTGGACTGGAGAGCAAAGAAAGGGTTCAAATTAAGACAGGACCGAGTACTCAGAGAGCAAAGGTGTGCTGCCTCGCTCCAGTTCGGATTGGATGGCTGCCCTTACAGAGATATGTGGTGAGGAAGGAGAGGCCGAATAATGCAGATCAACAGGATGGCACCACCTGCAAGgTGAAGCTGAAGCCGCCTATCACCCCTGTATTAAGCTGCAGTTCTGTCAAAGCAAATGGATCAGAGCCAGCAGacggGACTGCTGGACTTGGGGTCAGAGGAATGTCTGGAGCATTCTCTCTACAGGCTGATGATAAAAGAAAGGCCACTCTAGCAGAAAGAGATCAGGACACAGCACTTTATCGGGCCACCAGCGTGCAGAACACATCCCGTGAGAGATTTCTGTGGCAAACCCCAGTGCACAGGAGAGGGAGCGTTCCCCAGGCATCTCTACTCACAGCACCCCCTGTAGGTGGAAGAACGACTCCCAAACACAGCAGCTCTATATCCTCTATCACAATCACCTCCAGGAAGGTCATCCGTTCTGCAAGCCTGCCTGATACTAGCATATCTGGCCAGGATAGAGACAGGGAAGCCAGTCCTATGGCCCTAAACAACCACATCATTGACCCAGATTATACGAACACTCTATGCCCGGCAGAGGTCATTCCACGGAGGAAAGCCCTTGTGGTCAAAATTACTGAGCAACGAGTAGAGACCAGTAGATTTCTGCAGCCAGGTGCTAAAAATGGTCCAGTCTATAGTTTCCCCTCAAGTAAGACTATTGGAGAAAACTATTTCTCATGCCTCTCCACTAGAAGGAGCTCTGATCTTGCAGCTTCTAATCTCTCCAGCGTGAAGAACCACCCCTTACTAGCTTCCTTAAGTGTGACTGGTGGAGATATGTCAAAAATGACCCAAAAAGTGGAAAGTCAATCTCAAGTCCCCTCTTGCCTAGCCACCCAAGAAACCCAGACGCCAGTGGTGCTTCGGAGGAAAGCCACCATTATCAAGGTGCAGGAGCATAGAGATACCTTCAGCAAAAAGGATGAGGACCATAGAAGGAAAGTGGCCTACAGGCACAGCTTCAGTGGCCTCAACGTCACTGACATGAAACCACAATTAAACAATGAATGCATGTTTTCTGGATCTGAGATGCAAGTTGTTAGTAGCAAGACCAAACTATACAAATCCACAATGTCCCTCCAGCTGACATCCTCCAGTGGACCTCGTCTGGATGACTCACACACTTCAAGAGGTTCCCAGCCCCGGAGGCCTGCTAGTTGTTATGCTAGTCTGTTTAGCCCTGTTGAGCCAAATGCTGATGGTTCACAAGATGCTGCAGTTCACAGCACCATTTCTGTGCTTCCCCACGAGACAAATATTGACCCTGCTTGCTCCGCTGCCAGCAGCTCAAACAGGTGTTGGAGCACTGAAGGAGGAGCAGGGAGCCATGACAAGATTTATCCAAGTACAGAGAGCTCTGCTTCAGATAAAGggcagagcaagagagagtCTGCTCTCCCGAGGAACCAGCCTTTAACTCTCATCAAAGTACCAGAAAGCTCAACCCATGAGACCCACGATGCTATAGTGGCCTGGAATGCAGCTGCCATTATAGCCAATATAAAGCTGCAGAGtgagcagaagaagaaaaccCAGACCAATGGCAACACCAGTGGAGGGAGAGACTCCACATCCCAGAGCAAAACTGCAGGGGCCAGAGCTGATAAAGCAAATATTGCTGAGCAGAGTGGAACAGCTTCCTGTCCTGTGGAGAGTGAGACAGCAGCACATATGAAGCTGTTGACCAAACATGCAGAGTTTGCTCCAGTTGTGACCGCTGATGACTTATTATCACGTTCTCACACACACGGTGACAGTGTCAGTCTCAGGCACAAGAGAGACACctgctcaacacacacaaacaccaacactatCACCAACTATCCGCTCAGGGACAGAGAgGTTTTGGATCTGGTTCTGAATAGAGGGAAAGACTGAAACAGTGGGAGAGAGGTTAATGAGCTCATTTTGCTGCTGTCTGTCCGGTCTGTGCCAGCGCACTGAAGCTCCCCGAAGACTCTCCCTCATCCTCACGCTGCAAGCACAACGACTCCAATAACACAATGCATTTCACTAATGAAAATACTCTACATTTATCAAATGACTTCTTTATTAGTGATTACTGATTACCGAGATTAACCTTGCTGAATGTAAGAGCAGGAAATTTACTAAAGTGTGCTACATTGAGGACATTTCAGACTATAGCTGGACATCACAGTTAATGTGTGCCTTAAAGTATTTTAAGTTAGTagcatcaaataaaatattaaatatgactcATTTTCTATcagctttttaaaatcctgtgatatatatactgtatatcagtttACTTTTTAACTGTGGCTATGAAACTTCTTCATACAGCAATATCATGAAGTCTCCCGTAACCTTTAAAGTGCAGGATTTCTGagtttaaaaagtgttaaatgatCCTAGCAAATTGCTGGTGTCATTATATGAAATACACACAGTGACATTTATCACTGCaagcttttatgtttttttttttttttgccaaattggCTGTCCATGGTGCAGTCatgatattaaaatgatttaatatttaattgctcctaaatgttaaatgaccAATTGACCTTATCTGTGTATAATATAGTGCATGGACTGAATGTGATTAAAGCAAACGAAGAGTTTTGTATTCTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107667915

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915899.2 True 3514 mRNA 0.46 9 19694398 19719754
XM_026915900.2 False 3511 mRNA 0.46 9 19694398 19719754

Neighbor

gene id symbol gene type direction distance location
LOC113527107 NA coding upstream 321049 19370326 ~ 19373349 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding upstream 773632 18827636 ~ 18920766 (+)
LOC113527622 tcerg1l coding upstream 991641 18614191 ~ 18702757 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 coding upstream 1186540 18498245 ~ 18507858 (+)
LOC113527495 LOC108273717 coding upstream 1264710 18421553 ~ 18429688 (+)
LOC113527774 LOC108273823,LOC108429440 coding downstream 7917 19727671 ~ 19825878 (+)
dhx32a LOC108273822,LOC108429422 coding downstream 110848 19830602 ~ 19841026 (+)
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding downstream 125756 19845510 ~ 19853750 (+)
mrpl38 mrpl38 coding downstream 143558 19863312 ~ 19871403 (+)
gpx9 LOC108273566,LOC108439462 coding downstream 292953 20012707 ~ 20017504 (+)
G199051 NA non-coding upstream 267803 19426380 ~ 19426595 (+)
LOC113527366 NA non-coding upstream 379583 19309483 ~ 19314815 (+)
G198901 NA non-coding upstream 869837 18823633 ~ 18824561 (+)
G198886 NA non-coding upstream 925708 18768393 ~ 18768690 (+)
G198876 NA non-coding upstream 990699 18703475 ~ 18703699 (+)
G199161 trim65 non-coding downstream 72880 19792634 ~ 19856480 (+)
G199187 NA non-coding downstream 156987 19876741 ~ 19885988 (+)
G199216 NA non-coding downstream 224490 19944244 ~ 19944466 (+)
G199217 psd non-coding downstream 231033 19950787 ~ 19953308 (+)
LOC113527335 NA non-coding downstream 515061 20234815 ~ 20251474 (+)
LOC113527713 fam196a other upstream 127714 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 882136 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1184239 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1534312 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 2122333 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1737637 21457391 ~ 21500929 (+)
G200571 NA other downstream 2283070 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 2288757 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 2294052 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 3078388 22798142 ~ 22871284 (+)

Expression


Co-expression Network