LOC113527774 (LOC108273823,LOC108429440)


Basic Information

Item Value
gene id LOC113527774
gene name LOC108273823,LOC108429440
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19727671 ~ 19825878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915906.2
cgcgttgGGGACATCCAGCGGCGCgttggctgctctgtgtgtacaGCAGTGTGCAGGAGTGTTGATTGGCGGTGCGCAGGCGCTCTGAAGCTCAGCTGGGAGCTGTGGAAAGTTGAGCATTGCAGGAGCGCGCGGTCTCCAGCAGTGGCGGATCGGATGTTCCTGAAGTTCAGCACATCAgctgttgctctgtgtgtgatGGTGCCGTGAGATCAGTCCGATCTGGCCCTGGTCAGCCCGCTTCGGTCCGGGTCAGATCAGCCTCCCACCGGCAGCATGGCATCCGGAGCTGAGCTCGCGCTCTCGGCTCTCCGCGTCGTGCTGATGCTCGCGGTCTGCTCGGGTGACAGTCTGTCTAACGAAGcaaATCCAACCAATCAGCTGGGGCCTTTGGGTAAAGTGGAACACTATGGCGCTACAGAACCATGGCTTCTTGTTGGTGGGCAGAAAAGACCAATCAGCCTTTTGCAATCAATGggACACCCTGCATCACTGAGGCTCCAGATTGAGGCGGAAGGCAAACAGCTGCTGCTCATTCTGCAGAAAAATGAGGGGCTTTTTGCCACTCactacacagaaacacactacCTGGATGGAGGGAAGCCCGTCACTACCTCACCCAGCTCCAGAGTGAACTGTTACTACCATGGAGAGGTGAAGGGCTATCCACACTCCAATGTCATCCTCAGTACCTGCACAGGACTCAGaGGGCTGATCACCCTTAATGATAAAGTGTTGGTGCTGGAGCCAGCACAGAAGCCCAACAGCACTCTGCATCATATCTTTAGAGGAGAGCACCTCAAGGGACTGAAGCAAGGGACATGTGGACATGGACACAATGTCTCCTACACTGCAGGACTCTCAGACACTACAGGGAGCTTCTTCAGCTCACATGGCAACAGGTACAAGAGACAAGCCCAGAGCAGCACTAAATATGTTGAACTGATCATTGTAGCAGACAACCGAGAGTATCAGAAACAGGGCAAGGATCTGGAGAAAGTGAAACAGAGGCTGGCTGAGATCGCCAACTATGTGGACAAGTTCTACAGAGCACTGAATATCCGTGTGGCCCTGGTAGGCTTGGAGGTGTGGAGTGACTCAGACAAATGCCCTGTCTCTCAGGACCCGTTCACCACACTGCATGAGTTCCTGGACTGGCGGAAACTCAAGCTTTTACCACAGAGACCACATGATAATGCCCAGCTTATCAGTGGGGTGTATTTTCAGGGCACCACCATTGGCATGGCTCCCATCATGAGCATGTGTACAGCTGAGCAGTCAGGGGGCATCGTCATGGACCACTCTGATAACCCCCTTGGAGCTGCAGTTACTTTGGCTCATGAGCTGGGACACAACTTTGGAATGAACCATGACACACCGGAGCGGGGGTGTGGATGCAGGGTGACAGCAGACAGAGGCGGCTGCATCATGACTCCTTCAACTGGGTACCCCTTCCCCACCGTGTTCAGTTCATGCAGTAAGAAAGACCTGTTGGTGAGTTTGGATAAGGGAGTGGGTATGTGTCTCTTCAACATGCCTGAGGTGAAGGTGCTCTACGGAGGGCAGAAATGTGGCAATGGATATGTAGAAGAGGGGGAGGAGTGTGACTGTGGAGATCTCGAGgAATGTATGAACCCGTGCTGTAATGCCAGTACATGCACTCTGAAGTTCAATGCAGTGTGTGCACATGGCCAGTGTTGTGAAGACtgtcagTTGAAGCCTGCAGGTACACAGTGCAGAGAGTCCACTAACTCATGTGATCTGCCGGAGTTTTGCACAGGTTCTGACCCTCACTGTCCCTCTAACGTCTACCTGCACGATGGTCACATGTGTCACGGTGTGGACGGACACTGCTACAATGGCATCTGCCAAACACATGAACAGCAGTGCATCACACTCTGGGGTCAAGGTGCAAAGCCAGCTCCGGGCATCTGTTTTGAGAGGGTGAACTCAGCAGGAGACCCATATGGCAACTGTGGAAAAGACTCCAAGGGCTCATTCGCTAAATGTGAAGCACAAGATGCTAAATGTGGGAAGATCCAGTGTCAGGGCGGGGCAAATCGGCCAGTAATAGGAACCAATGCGGTCTCCATAGAGACCAACATCCCTCTGCCGGAAGGTGGGCGTATCCTGTGCCGGGGGACTCATGTGTATCTAGGTGACGACATGCCTGACCCAGGACTGGTACTAACTGGAACCAAGTGCGGCAACAGCATGATGTGTCTGAATCGGCAGTGTCAAAATGTCAGTGTCTTTGGCGTCCATGAGTGTGCGGCCAAGTGCAGCGGACGTGGGgtgtgtaataataaaaagaattgtCACTGTGAGGCACACTGGGCTCCCCCTTTCTGTGATAAAGCTGGATTTGGAGGCAGTGTGGACAGCGGACCAGTGAGACAAGCagATGGTGAGAGTATAAAGGTGGGCATCGTGGTAGCATTCCTGTGTTTGCTCTTCGTGGCCATGATTGTCTGTGTTAAGAGGAAGACTCTGGTCAGCCTCTTCATCaataacaagaaaaacaacattgaGAAGCTAAGGTCAGTGGGCCCAAGCAGGCTGATCGGTCAAGGAAACACACTCTCAACcccagagacacaaacacacactacatgcaGAGCATCACCTCATTGTCAAGCTCCAGCCATACCACAAAGTACCAGCATATATAAGCCTCAGTGTTCTCTCCCGGTGTTGCACTCTGTTGTTGGTGCTCACACTCTCCACGCTCTGCCCCAGTGTCCTCCACTCCACCTGAGCCCACTGTTACCATTGCCCTTTGCCCCACCCACCCACCGTGCACCTCCACCTCCCCtgccacacacaccctcacctcGCCACAGAGCCCCCCcagcactgcacacacactcccacctCCACACTCCAGCACGAGGAGCCTCCCTCCTCACTTTAAGCTGCCAGAACACCTGCAAGATGGCTAAGGAGTTGGAGAAGCCAAGCCCACCTCAGAAGCCTTTGCCCGCTGACCCGTTAGGACGGAGCTCTCGGCTGGGACGGAGCCCCCTAGCAACACATCTCCCTGCTCCCAGCTCAGCTCCACCCGTCTTACAGCCCAACAGACTGCCTCCGAAGCAGCCCCCCACACTGCCAAAGCCTCAGTTCTTCACAGGAATGAAGAAGCCCTGCAGCTGAGACAGAAGCCTGTGAGACCTGTGGTTCAATCCGTTTTGCACTATGAAACTCTGCTGGTCCTCATGAACAGTGTGTCACGGTCATGACGGCTTGACGGTTCGATCCCTCGGTGCTACGCCTCCCTCCTTCTCCGGTGCTATGAGTCAACACTCAGGTACACATCGTACATTATTTATGTTCGTCAAAAGTATATTTATTTCAACAttgttttggacattttttgtAGCATTATGCCCTGAATTTGATTGGATTTTGAACTGCGTAATGAGTCGAATACTAGCATGATTCAGCAGTCCGGAGGGAGGCACTAAAGAGATATACTCTAACCTGTGAAAATAAACTGAAGACTGTAATGTTGGTGCTTTTTATGCTAGAACTGGAAAGGGGGAAAGGTTAGAAGGGAACAGATGTGCTCTGTTGCTGCATAACATAATGTGTCATAGTCATAGCATAAGGTTGACAGACTCATCTCAGCCCACCATATTGTGAAAGTTGTCTGTAAGTTCACCATACACTTAGAGAGGAAGTAAAACAGCATCTCCTGTAAGCAGTAAAGACAGCCGTGTGTTCCCTCTTCGGACACCATGCGCTCTTGTTCATATAGACACACCTATCCTGAACTTGAGAAACTATATATGGATTTTCATGGCAGTTAGACATTAAACAGTATTAGCTTTGATTGGTGGAAGTCATCTTAAAGTAATACACTGGTGTTTTTCAGTATAATCCCTTTCCACTGCAACTGTAGCATATGTGTGATAACCCCAGAGTAGAATTCCAGTTCGTTTCCTggcactgagaaaagaacagaaaacacatttattagaaACTTACTTATAATGTaaatctaagggcagttgttgaattctgtcactaaacatttacagtactgtgcaaaagtcttaggcaccttattttcttagtacaaactttgttatagat

Function

GO: NA

KEGG:

id description
K06835 ADAM12; disintegrin and metalloproteinase domain-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915906.2 True 4095 mRNA 0.51 23 19727671 19825878

Neighbor

gene id symbol gene type direction distance location
c12h10orf90 LOC108273407 coding upstream 7917 19694398 ~ 19719754 (+)
LOC113527107 NA coding upstream 354322 19370326 ~ 19373349 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding upstream 806905 18827636 ~ 18920766 (+)
LOC113527622 tcerg1l coding upstream 1024914 18614191 ~ 18702757 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 coding upstream 1219813 18498245 ~ 18507858 (+)
dhx32a LOC108273822,LOC108429422 coding downstream 4724 19830602 ~ 19841026 (+)
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding downstream 19632 19845510 ~ 19853750 (+)
mrpl38 mrpl38 coding downstream 37434 19863312 ~ 19871403 (+)
gpx9 LOC108273566,LOC108439462 coding downstream 186829 20012707 ~ 20017504 (+)
LOC113527727 LOC108274321 coding downstream 360927 20186805 ~ 20200272 (+)
G199051 NA non-coding upstream 301076 19426380 ~ 19426595 (+)
LOC113527366 NA non-coding upstream 412856 19309483 ~ 19314815 (+)
G198901 NA non-coding upstream 903110 18823633 ~ 18824561 (+)
G198886 NA non-coding upstream 958981 18768393 ~ 18768690 (+)
G198876 NA non-coding upstream 1023972 18703475 ~ 18703699 (+)
G199187 NA non-coding downstream 50863 19876741 ~ 19885988 (+)
G199216 NA non-coding downstream 118366 19944244 ~ 19944466 (+)
G199217 psd non-coding downstream 124909 19950787 ~ 19953308 (+)
LOC113527335 NA non-coding downstream 408937 20234815 ~ 20251474 (+)
G199796 NA non-coding downstream 769363 20595241 ~ 20595444 (+)
LOC113527713 fam196a other upstream 160987 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 915409 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1217512 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1567585 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 2155606 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1631513 21457391 ~ 21500929 (+)
G200571 NA other downstream 2176946 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 2182633 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 2187928 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 2972264 22798142 ~ 22871284 (+)

Expression


Co-expression Network