sar1aa (sar1b,sar1aa,LOC108429350,LOC103023380,LOC105903360,LOC107659671)


Basic Information

Item Value
gene id sar1aa
gene name sar1b,sar1aa,LOC108429350,LOC103023380,LOC105903360,LOC107659671
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 16778289 ~ 16783706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915913.2
AGAAACGGCGCCATCTCCCTGTCTCCTGTCTATGGCTACCGCGGACGCTCTGGCACGGCGGTCTAGCTAGCGGCTAATTCATTTAGCTAATctccattatttattaaaactcaCACGAGGATCATTTGAGCGGCGCTCGGAAAAGGGCGAGGACACGCAGATATACTGAGCTGGCTCTACTGTGACAGAAGTGATCTTATATTCCGAGTGAGTAGTTTTCCTCCAAGTCGCCTCAGCAATGTCGTTTATATTCGACTGGATCTACAAAGGCTTCAGCGGTGTgctgcagtttctcgGTCTGTATAAAAAATCCGGGAAGCTTGTGTTCCTGGGCTTGGACAATGCCGGAAAGACGACTTTACTCCACATGCTGAAAGATGACAGGCTGGGACAACATGTGCCTACACTACATCCTACCTCAGAAGAGCTGACGATTGCTGGAATGACTTTCACCACATTCGATCTTGGTGGTCATTTACAAGCCAGGAGAGTGTGGAAGAACTACCTCCCAGCTGTGAACGGAATCGTCTTTCTGGTCGATTGTGCAGATCATCCACGTCTTTCTGAGTCCAAGGTTGAGCTCGATGCGCTGCTGTCAGACGAGACCATATCGAACGTGCCAGTCTTGGTGTTGGGGAATAAAATCGATCGAACAGAAGCAGTGAGTGAAGGCATGCTACGGGAGCTCTTTGCTCTGAATGGACAGACCACTGGGAAGgGAATCGTGTCTTTGAAGGAGCTGAATGCACGGCCATTAGAAGTCTTCATGTGCAGTGTGCTAAAGAAACAGGGCTACGGAGAAGGGTTCCGGTGGCTCTCGCAGTACATTGATTGAGTTAACGGAGGTTTCTGCTTAAAAAGACTCCTACCTCTGAGTGATGAactttaaaaagagagagactgagactgTGATAAAGGACTAAGGAAGAACATGGTGTATTAGCCTGagaaatagtttttaaaaactaacacacacacacacacacagcattcctTTCACCTGGAACATTCCACCCAAATTATCATTTTAAGTTATGTTGTCTGAAgacatttacagtattaaagTATTTAACACCGCATTTTGGGTCTGATAGCTATTCATGTCACATacgcgcacatacacacaccccctcacaAACAGAAGTAGGTTGTATATAAGCATAATGATGGCACTGCTATTACATATTTCACAGATGATTCCCtctgaattattaaaatgatgaaatacaAATTAGTGTCTCGAGTACACCCAGTGGTTCTGTAGTTAATAAGTACCATTAATACATGAACATGTTTTGtcttaaaacattaacatttctgcTCCACACGAACAGTCTGTGTGAAATGGAAGCTTTATCCATTTCCAGTGAGCTTTTCCATCACAAGCACTTGCGTATTTTCCATCCTGCATATTGCCCTTTAGACGTGACTCACACAATAACCTGTAATGTGTGAGTTAAACACAATGATGTGACCAGCTTCTCAAATATCCTGTTAATCAGTACGTTTATCTTTCTCTTAGATCTTATAAAATCATATATTCAGGAATATACTGTCATATTGTAGGTGTTCATGTTTTGTTGTAACAGATGAGCGTAAACAGGTTCTTCACAGGCTGCAGGTATTTTATGAATATCTGTTGATAGGAGAGTATATGCAGTGGTGAATAGCATATGAATATGATTGTCATctctcattttattttgcaCACAATTATTGTACGTGGCAATCTGTACGTCTTTACAGTTGATAACCTTGAACTGCATTCACCggtatttaaaataattcattgtgtaaaaaaaaaatccatctataaatattttgaacaatc
>XM_026915914.2
TGTCAGCTTGCCGGCCGAGGATACAGGAAGAGCTGCAGATTTCAGTGATTCATCCCAGCTCGGGCTCACTAATGCCGCTTTCACTGCACATTCAAGTGGCATGATCGCAGTCTCTGACCCCTTCCTTGTCTGTTTTTTCCCTTGATTTCAGGCTCTACTGTGACAGAAGTGATCTTATATTCCGAGTGAGTAGTTTTCCTCCAAGTCGCCTCAGCAATGTCGTTTATATTCGACTGGATCTACAAAGGCTTCAGCGGTGTgctgcagtttctcgGTCTGTATAAAAAATCCGGGAAGCTTGTGTTCCTGGGCTTGGACAATGCCGGAAAGACGACTTTACTCCACATGCTGAAAGATGACAGGCTGGGACAACATGTGCCTACACTACATCCTACCTCAGAAGAGCTGACGATTGCTGGAATGACTTTCACCACATTCGATCTTGGTGGTCATTTACAAGCCAGGAGAGTGTGGAAGAACTACCTCCCAGCTGTGAACGGAATCGTCTTTCTGGTCGATTGTGCAGATCATCCACGTCTTTCTGAGTCCAAGGTTGAGCTCGATGCGCTGCTGTCAGACGAGACCATATCGAACGTGCCAGTCTTGGTGTTGGGGAATAAAATCGATCGAACAGAAGCAGTGAGTGAAGGCATGCTACGGGAGCTCTTTGCTCTGAATGGACAGACCACTGGGAAGgGAATCGTGTCTTTGAAGGAGCTGAATGCACGGCCATTAGAAGTCTTCATGTGCAGTGTGCTAAAGAAACAGGGCTACGGAGAAGGGTTCCGGTGGCTCTCGCAGTACATTGATTGAGTTAACGGAGGTTTCTGCTTAAAAAGACTCCTACCTCTGAGTGATGAactttaaaaagagagagactgagactgTGATAAAGGACTAAGGAAGAACATGGTGTATTAGCCTGagaaatagtttttaaaaactaacacacacacacacacacagcattcctTTCACCTGGAACATTCCACCCAAATTATCATTTTAAGTTATGTTGTCTGAAgacatttacagtattaaagTATTTAACACCGCATTTTGGGTCTGATAGCTATTCATGTCACATacgcgcacatacacacaccccctcacaAACAGAAGTAGGTTGTATATAAGCATAATGATGGCACTGCTATTACATATTTCACAGATGATTCCCtctgaattattaaaatgatgaaatacaAATTAGTGTCTCGAGTACACCCAGTGGTTCTGTAGTTAATAAGTACCATTAATACATGAACATGTTTTGtcttaaaacattaacatttctgcTCCACACGAACAGTCTGTGTGAAATGGAAGCTTTATCCATTTCCAGTGAGCTTTTCCATCACAAGCACTTGCGTATTTTCCATCCTGCATATTGCCCTTTAGACGTGACTCACACAATAACCTGTAATGTGTGAGTTAAACACAATGATGTGACCAGCTTCTCAAATATCCTGTTAATCAGTACGTTTATCTTTCTCTTAGATCTTATAAAATCATATATTCAGGAATATACTGTCATATTGTAGGTGTTCATGTTTTGTTGTAACAGATGAGCGTAAACAGGTTCTTCACAGGCTGCAGGTATTTTATGAATATCTGTTGATAGGAGAGTATATGCAGTGGTGAATAGCATATGAATATGATTGTCATctctcattttattttgcaCACAATTATTGTACGTGGCAATCTGTACGTCTTTACAGTTGATAACCTTGAACTGCATTCACCggtatttaaaataattcattgtgtaaaaaaaaaatccatctataaatattttgaacaatc

Function

symbol description
sar1aa Orthologous to human SAR1A (secretion associated Ras related GTPase 1A).
sar1b Predicted to enable GTPase activity. Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; intestinal cholesterol absorption; and organ growth. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in blastomere; digestive system; nervous system; pharyngeal arch; and primary germ layer. Used to study chylomicron retention disease. Human ortholog(s) of this gene implicated in chylomicron retention disease. Orthologous to human SAR1B (secretion associated Ras related GTPase 1B).

NR:

description
PREDICTED: GTP-binding protein SAR1a isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915913.2 True 1831 mRNA 0.42 7 16778289 16783706
XM_026915914.2 False 1809 mRNA 0.41 6 16778992 16783706

Neighbor

gene id symbol gene type direction distance location
ppa1a LOC108273562,LOC108429359,LOC103023701,LOC107597744,LOC103362474 coding upstream 961 16771237 ~ 16777328 (+)
zeb1b zeb1 coding upstream 1022890 15695763 ~ 15755399 (+)
LOC113527272 NA coding upstream 1163419 15605292 ~ 15614870 (+)
svila svil coding upstream 1173793 15527593 ~ 15604496 (+)
jcada kiaa1462 coding upstream 1263245 15482305 ~ 15515044 (+)
ddit4 ddit4 coding downstream 82504 16866210 ~ 16868429 (+)
narf narf,LOC107581643 coding downstream 106658 16890364 ~ 16899730 (+)
slc9a3r1a slc9a3r1 coding downstream 117687 16901393 ~ 16923228 (+)
asb3 LOC108274349,LOC108430683 coding downstream 239019 17022725 ~ 17028922 (+)
nrxn1a LOC108274166 coding downstream 341478 17125184 ~ 17274561 (+)
G197726 dnai2,LOC107654551 non-coding upstream 13962 16764008 ~ 16764327 (+)
LOC117598690 NA non-coding upstream 14487 16758108 ~ 16763802 (+)
G197660 NA non-coding upstream 279344 16498714 ~ 16498945 (+)
G197659 LOC108191637,LOC106904820 non-coding upstream 279628 16498435 ~ 16498661 (+)
G197501 cdh18,LOC108273706,LOC108430851,LOC107653102 non-coding upstream 728397 16049596 ~ 16049892 (+)
G197816 NA non-coding downstream 123124 16906830 ~ 16907142 (+)
G197803 NA non-coding downstream 160240 16943946 ~ 16954011 (+)
LOC117598668 NA non-coding downstream 247044 17030750 ~ 17043247 (+)
G198007 NA non-coding downstream 544068 17327774 ~ 17327950 (+)
G198008 NA non-coding downstream 562310 17346016 ~ 17348598 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 2454008 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 2744146 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 3219204 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 3756294 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 4304306 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 71983 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 762087 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 1371439 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 1658180 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 2022371 18806077 ~ 18812262 (+)

Expression


Co-expression Network