hlfb (LOC108273987)


Basic Information

Item Value
gene id hlfb
gene name LOC108273987
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14738256 ~ 14744868 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915935.2
CAGCACGCGCCCGGTGCGTGCCAGCGCCTGAGCGGTGGATGCGTTGTTGTTGTAAACGTGCTTGAAACCGATGAAAGCTTAGCAGCACTCATTCCAGTTGCATGCACTGTGCAAGTCTGGAAAACCTGATTAGTGGAAAAATGGTCGCGAGCTCGAAGCGCTGCCTTTAACTCAGCTCTTGTGGTTAGATGAGCTTCAGGTTTCTCCTCTAGTTCACTGCTTTCTAGCCATATACATCTACCACGATAAATCTAATTGCACTGCATTCAAACGCAAGTGCAGTATAGCTCGAGTCACTTGTCACATTTGTTCCTGATTTGTGTGTATAGTTTCCATGCAGCTGGAAAGTCGGTCCAGCCTCTCGAGCTTTGACGTCACGCGCCTCAGTGTTCACACATGGAAGTGATCATTACAGTCCACTCAACAGTTTAAGGTCGCAGAGCCTGGAGCTTACAGAGCAGCaggctttctgtctgtctctctatctatctgtctatctatttatctatcagTCGCGTTTATTCTTTCAACACACCCGACTCGTCTCGTCTCGTGCTTCGTGAAGCGGATCGTGCACTTTCTCCGGCTCTTCTCtcggttttgtttttgtttttgtttttgttatttttttgcctGCACGGAATACCACTGACATGTCCAGACCTCTGACCATGAGCTCAACTTTTCTACCTCCTCCAACTTACGGAGTGCTCAAATCTCTCCTCGAATATCCAATGAAGCTACCACTGCACCACGAAGAAGTTTATGACAAGGAGAAGAAgttggaggaggagaagaatgTGCCGCAGTCCGCCTTCCTGGGCCCGGTACTTTGGGATAAGACCTTGCCTTACGATGGCGACAATTTTCAGTTGGAGTACATGGACCTTGAAGAGTTTCTGTCTGAAAATGGCATCCCGTCCAGTCTACCACAACACGAGCAAAGCCAGTGTCctcagcagcaacagcagcagcagcagcagcaccCCGTCTCTGTCATGGACCTCAGCAACAGAGTCAGCACCTCCATCCACACGAGCATGGTCCCTCAGCCCTGCCTCCAGAGTCCCACACGAACAGTGTTGCCTTCATCACGCAACACTCCTAGCCCAGTTGACCCAGAGTCCATCCAAGTGCTGATGAGCTATGAGCCCGACCCAACAGACCTGGCTCTGTCCAGTGTGCCAGGCCAGGAAGCATTCGACCCTCGCAAGTGCAGGTTCTCTGAGGACGAGCTTAAACCTAAACCAATCATCAAAAAGGCGCGCAAAGTCTTCATTCCCGATGACATTAAGGATGAAAAATACTGGGCACGGCGCAGAAAGAACAACATGGCTGCCAAGAGGTCGCGGGACGCTCGGCGCCTGAAGGAGAACCAGATTGCCATCCGAGCTGGTTTCCTGGAGAAGGAGAACTCAGCTCTCCGACAGGAAGTGGCTGATTTGCGGAAGGAGCTTGGGCGCTGTAAGAATATTCTAGCAAAATATGAGGCTCAGCATGGCCCTCTGTGAGGCCTACAGGCTTGTGTATTGGGAAGGACGATGTAACGGTGTAAAGCCCTTTCAACATTTAAACCTGTTGACCATCACCTCTGTCTGTTCTTGGCACTTTAGAGTTCTGTGTTAGTGTGAGGTCATGTTTGAGTTACATTTTTTAgccaggctgttttttttttttttttttaaaacagagatGTTTTATGCTACTAGGAATGTTTCTTTCTTATTCATGTATTCTGTACATGTTTTAGGAGTGTTGTAGCATCTAATTgtacaaaaaaatctttttttgttcgtcataatagttacattttacagtttttattaataaagtacAGTTTGCAGGCTTTATATGTTTAGTGAGTCAGCCCTCCAGTGTTCAATCTGGTGAGCAAAATTTACACTTAGGCCTCACATTAGTTTTAAGTGTCTCTACAATGGCCTGCTGTTTTCACAGAGAGAataaattatagaaaaatatataaaaaggaGTATTTATGAGTATGCTTTTTTAACATGACAGttttttattaaactatttgactgtgtaagctgttacatGATTGTTACACACCATTTCTCATATCCCAGTTTATTTCAGATTGGGATTTGTGTTGATATAGAGCCATCGTACCTCTCACATCAGCATGGTTTTTGAATGCTTAAACCATATTTTGATCTTTAAtcttatatatttcattttctggCTACATTTAACATTATGTCTTACATACCCACCTTTACCTTTTTCTCACTGTAGGAATTATAATGAGATGAATTATAACACTACACCTGTGGCAATAATTTTATTGGCTTCTATACTGAACATTGAATGGAGTTGGGacattttgtttattgaaaTAAAGGTAAATGACGCTGCCAAGTTTTATTAGCACTAGTCATTTCACAGAGAATGGCAGTGTGTTTGCAACTtgattaataatcattaaaaaaaaaagcctctgcTTGCCTTTTGGAGCCAATGTGGTCAGAATGTACATGCAAGGTGATTTTCTGTCTCTATTCCAgaccaaaagaaagaaatacatctATGTAACGTTATAtgaaagtaaaatgttttaaatgttttacagagcttttcttgtttttgtacagtatttTCCTATGAATCTCTAAAGATGTGTTTTAAAAGGtatttgatggaaaaaaaagagcttttaaaatttttcaagTGCTGTAGCTTGTTGGAATTCTGCATGGGCATTAGTGAAGTATAATCCAATCAATTTATCTAATGCATTAAAGTGATTTCTGCATTTACCATCCATCTGTTATCTCCTTGTCATACTGAATCTATTTTTATGCATCACTGAAAGGTGAACAaggtcttttttcctcttttctgcTGTTTGTACTATTGTTAGGATCAACACAGTCTGCAGTGTTTCTTGCTGGTAACATGGTTTGTTTTGAAAGATGGTATTATTATGTGTTTGCTATATTGGTGAAAGCAGTGAATGTTGACTGTGAAAAGATCTTAcgacatacagtatacagtttaATTAtagcatgtttatttttagtagAGTATTTATTggctttaaaaaattattttattgtctgtttattgtctgactttttttctttttcctgttttcttgcCCACAATCATGATCAAAATAAATTCTTAACAAAG

Function

NR:

description
hepatic leukemia factor-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915935.2 True 3156 mRNA 0.41 5 14738256 14744868

Neighbor

gene id symbol gene type direction distance location
stxbp4 stxbp4 coding upstream 1989 14712330 ~ 14736267 (+)
acsf2 acsf2 coding upstream 128331 14587265 ~ 14609925 (+)
tap2t LOC108273873 coding upstream 160585 14571593 ~ 14577671 (+)
slc16a5a slc16a5 coding upstream 167967 14560553 ~ 14570289 (+)
kctd2 kctd2,LOC107727321,LOC108410512,LOC107666921,LOC107582756 coding upstream 179331 14547948 ~ 14558925 (+)
ankfn1 ankfn1 coding downstream 10760 14755628 ~ 14823551 (+)
nog3 nog coding downstream 80367 14825235 ~ 14826880 (+)
rbfox3a LOC108273414,LOC108435270,LOC107566522,LOC107755508,LOC107581581 coding downstream 148356 14893224 ~ 15220705 (+)
csnk1db csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC103369437,LOC108274016,LOC107755503 coding downstream 510397 15255265 ~ 15266918 (+)
ccdc57 ccdc57 coding downstream 534795 15279663 ~ 15297119 (+)
G196387 NA non-coding upstream 123599 14605303 ~ 14614657 (+)
G196386 NA non-coding upstream 136817 14597778 ~ 14601439 (+)
G196378 NA non-coding upstream 159798 14577906 ~ 14578458 (+)
G196360 NA non-coding upstream 212173 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 399986 14337963 ~ 14338270 (+)
G197174 NA non-coding downstream 522431 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 960264 15705132 ~ 15714087 (+)
G197399 NA non-coding downstream 976727 15721595 ~ 15722402 (+)
G197434 NA non-coding downstream 1109066 15853934 ~ 15856543 (+)
G197498 NA non-coding downstream 1301435 16046303 ~ 16046505 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 413975 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 704113 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1179171 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1716261 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2264273 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2110821 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2800925 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3410277 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3697018 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4061209 18806077 ~ 18812262 (+)

Expression


Co-expression Network