tbkbp1 (tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771)


Basic Information

Item Value
gene id tbkbp1
gene name tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12269685 ~ 12317104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915940.2
GAAACTGGGTGCTCAATGTTTTCTGAGAAACAGTGACGCGGATTTTGAGGCATCTCCACGCAGGAGTCTCTCATCTCCCCTCCTTTGGGCAGCGCAGTGAAGGAGAAAGCTGCTCTAcacacagcatcagcagcagcagcatcagcatcagcagcatcagcagcaggCATCAATCCGAGCGCTTGCCGGGGTGCCTTGCCCCCTACTTAAGACATGGCGTCTGAAGACCGATCGATGGCAGACCgCTGAGGAAGAGGAGTGAGTGATGGAGTCTCTGTTTGGAGGGGAGCTGGGATTGTTGGGAGGAAGTGAGGGCCTGAAGGAGGATGGCTGCTGGGCAGGATCGCCCTTACCTGAGGATATGTACTCAGCATCCCACTTCGCCCTCATCAGCGCTTACCAGGACATCAAGACCCGACTGGCCGGCCTGGAGAGGGAGAACACCGACATCAAAAGGAAGCTGAAGCTTTACGAGATAAAGTTTCCTATGATCAATGACTTTGGCGAGGACAGGAACTCCTACTGCTCCTTTGAGCCCAAAGATACAGCCCTGCTCCAGTCTGAGAACGGCAATCTGCAGCAGAGGATCAACATCCTCACCCATGAGCTTCAAAAGAGTAAGGAGCGGGAGGAGCAGCTGGAAGATGTTATTCAGGCCTATGAGAAGATCCACATGGAGAAGACTAATCTCCAAAGAGACCTGGACAAGATGACATCTCTGGTGGAGAAGCACATGGAGCGCATCCACAGTCTGGAGGCCGCTCTGAGGCAGCGAGACAGCTCTCTACACAAATTCAACACACAACTGCACAGCAAAGACATGCAGTACCTGCAGCTACATGCCAgtcctgacacacacaGGCTAGACTGCCCAGCTTTGACCCTCCAGAGCTCCCGCAGTCTGGATACTCTCTCCGACCTGAAACTGCAGAGGCTGGAGGCGGAGCTAGAAGGGGCGCGGCATGAGGCCCAAGGGGCGTGTCAGAGGGAGGAGGAGCTAAAGGCTGAATGTGAAAGACTGCAAGAGGAGCTAAGAGAGCTTCAGAACAACCAGAGACAACAGGATGTGAGCTCCACTTGTGCCCAGTGTGACATGGAATGGATAAAGAAGGTGGGAGATGAACAagTGAATCTGGCTCTGGCCTACACTGAGCTGACTGAGGAGCTTAGCAGGCTGCAGGCACTGAGCACCAAACAGACAGAGATCCTGAGGAAAGCCTCACAGGAAGACACTAGCCCAGTTCAACGCCATTCTCCTGTGCCTCACCAGAGGCACTCGCCTGTTGCAACGACATTCCCCATCCAGCAACGCCATTCCCCCATCCAACAGCGTCATTCCCCAATTCAACAGCACCATTCCCCTATTCAGCAGCGTCGCTCTCCAGTGCCGCAGCGTCTCTCCCCGGACATGCACCGCCGCTCGCCCCTGGCCGAACTTAACGATGGCCCGGCTTCCTACACATGCAGACCTGCTACTCAACACCTAAGAGCCAGTTTCCAAGGGCGCCGCAGTTATTCAGAGGTTGCAGACCCTTCAGCCTATCAGCGTCCACCACGGTTCACCCTTGACCCCGTGTCCACCTTGCCTAAGCCCCGTCCTTACGTTGAGAGCTACCacaaacagcagcaacaacagcaacagcagcagcagcatggcCATATCCTGGCCCAAAGGCGAGGCTCCCAGCCTGGGATTCAGTCCATAGGAGGGGAAGGAAGTATGGCTCATGAATCACCTAGACACACCAGAGAGCTCTCTTTCCAGCATGCAGAATTGTCACATCTGCATTATGAGCCTCAGCCTGCTCCAGCAACACTTCATACCTCTCCCCAGCCACCACACTCTTCAGAGGATGAAGAAGAGTGGACCTGCCCTCACCCCATCAGTCCCCCGCGGACTCTGGGGACTTCTGGTCCCACCTCCAGCATGAGAGGCCCTGCTTCCTGTTCAGCCTTCCCCATCCCAGCTCGCCCCAACACCTTAAGCTGCCACTCACCTGGATACCTGCATGCAGAACATGCCCAGTCCTGGCCTTCTATTAATCTGTGGAtagagacagaggaggagagTGATGTGAGGAGCTGCCCGCTGTGTCAACTCATCTTTCCTGTCGGTTACCCTGATGATGCCCTGATCAAGCACATTGACTCACACTTGGAGAACAGCAAGATCTGATACCACAATCACCACGCTGTCCCTAAAACCCACTTTAACACTCATCAACTGTTAAAACAGCTTTAGGTGGATGATTTTAAATTAAGAGGAGAGCGGGCCAGCTGAGCCAGATCCACATAACCTGAGGATTATCAGAGATTTACAGTATGTAGTGTCTAAGGTTATAATTAGGAATGGCACTAAGAGATAAAGGTTTAACAACACCTTCCTAACATAATGTTGGCTTAATTTCATTCTTTCAACTATTATCTATTTTGATGTCAAGCTAAATCTTAGAGTTGTTACAGGCCAACTCTCCTAAGCAGACAATAAAACAGTCGTATACAGATACGCCGCAATAACCACAGTGTTCATTTGGCTCCAGGCTGACTTCTAAAAAAACAAGAGGCATTATTTCGACACTGGAGATTTTTGCTGTGCAGGCTTTCTTCTGTTATTTTAAACTATAGCTTCCATAATTCTTCATTGTCTGTTTCAGTCCTGCCCATAGAGGCGCATCCAAAAGCCACACAGTTAGTTAAACTTCATAATGAGTGATTGAAGACTGTGTGAATTTAGAGAAGATGGTGTCCTGCAGGGCAGGACATCATGGCCATTGCAAAAGTGTCAATATAGTACACTGGCCAATGACTACATTTGTATGTGGGTCTAAATTTCAGCACTTTATACAAACCCTTAATATCCAATCTATCTTTACAAATATTACTAAACACTAAGGCAAAAACATGCAGTatagattatatttatttttaatattaccaAATGTCTCTCTTAATTACATCTTAGATTGCTAGAATGTCCCTTTAACAAAACTATACATGTAGATGTATGTAGTTCATAATATAGTACGCATAATATGTCAACTTGGAACTGCATCTATTGTTTGTCTTCCTGTATACCAAGTTCttgaatgaagaaaattaaGGAACATTACcaggacatttttttaattttaatttttaccaGGTTTTAAGTTCCTAGGCTTAACAAGACTAAATATGATGATATTGCATTTTCAATACAGCATTAATATGACTATCACAGTTATTCCACTTATTATACAAACATAATCTTTTTCCTACAGAGTCAGCACTCTGAAACTGACTCATTTTCCAGTGAACTAAACACTCGATAGGATGGATGCCTCTAAGATGTACTTGACAAAATAAGGATCCTTTTTATGACCAAATTGCAAAGCTGTTGTATCAAAATGCTTTACTTTATGTACCATAAATGTACTTGATCtgtatttaaaactatttaagtgtattaaattgtaaaatctACTATGTATATAGATAGGCATTTTGCAAGCTCAGAGGAGAGAAAATAGCTTCCTGAAGAGCAAAAGGAAAGTTTGCTAACTAAGAATTACATGCTTTGTTTTAATTCTACCCTGGAGGCAAAGACAAGAATACAGTAAGCTATGTTAATTAGCTACATTTCTGGCTACTCTCTCTAGAGTGTGTCCTGTATTGTGAACTCTTTCTGCAATTTCTAATACCACGGTGAGTAGCCAGGACACGTAATATCCCAGTGACCCAATTATTGAGCTACTAAAGAGAGAAACTAGAACAGCATGATCACGCCATTAAAGCCTAAATTACATACTCAAATATAACTATGAGCAGACACTGGCTGTCACATAGCAAGGGAAGACCACCAAAACTAAATGCACTGGCAAAAttataaacaggaaatgaagaCAGTTTAGTAACCTGATGGCTGAGAAATACACTTGATATCATGCTATATGAAGAGGACCATTTAGTGTGGCCATATGAGTGGCCAAGAAATTAGACAAACAGTACACTATGATCATCACAGAGACAGATTGGGAAAAACCAGGTTTATATCTAGACTGAAAATAATGACCAAGTACCAATCAAGCATACCATCTTCATATTGGTTAAAGTGCAAGCCTAATGTTTTTATCTTGTGGCTGGATGTGCAGACTGGTGCATGCGCAGGGTGTCTGCTACAAAATCACGCAACAGCACATacaactcacacacattttGAGTCAGTCTAGCACCTTTATCCAGAGTCCTACAGTGTAGAAACGAAGCAAAACTTAAGCCATTATTCACAAGAGTTCACTCAGGAGTTATTTAAAGAGCTATTGCTGATGTTTCTCATCCTTAGAACTGacttctcagaaaaaaaatgcaagccCTCTCTGGATCTTCTTCTCTTCTAGCCCTGTCGTTTGGTGTGTGACTACTTTGTGATATTCTTAAATAACTCAGGGGATAAGACTTTGTGAATATGGCTCCTGTTACCGTGCACTCCAAAATATCATTCACAGGAACAGAGCGATCACTCGCCAAATCTGTGAGAGCAGAGAGAGCACTAAAGAGTTAGGTAGTCATAGACATATTTTTGTGATAGCAAGGAGTGACCTCAAAAAttctataaaaagaaatattcaaaataaatgcataatgtgtcatattttattgtttctgtaaata

Function

symbol description
tbkbp1 Predicted to enable metal ion binding activity. Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to be active in cytoplasm. Orthologous to human TBKBP1 (TBK1 binding protein 1).

NR:

description
PREDICTED: TANK-binding kinase 1-binding protein 1

GO: NA

KEGG:

id description
K12652 TBKBP1; TANK-binding kinase 1-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915940.2 True 4650 mRNA 0.45 11 12269685 12317104

Neighbor

gene id symbol gene type direction distance location
cdk5r1b cdk5r1,LOC108426451,LOC103047129 coding upstream 84647 12179023 ~ 12185038 (+)
LOC113527660 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947,LOC107689267 coding upstream 126942 12141560 ~ 12142743 (+)
cacna1g cacna1g coding upstream 236332 11857394 ~ 12033353 (+)
spata20 spata20,LOC107679345,LOC104963383,LOC107676339 coding upstream 438021 11795917 ~ 11831664 (+)
etv4 etv4,LOC107706904,LOC107552771 coding upstream 485537 11759981 ~ 11784148 (+)
tbx21 tbx21 coding downstream 31856 12348960 ~ 12360643 (+)
pnpo pnpo,LOC107565739,LOC102778316 coding downstream 61374 12378478 ~ 12383567 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 73689 12390793 ~ 12398133 (+)
nfe2l1b nfe2l1,nfe2l1b,LOC107565927 coding downstream 90249 12407353 ~ 12415790 (+)
phkg2 phkg2,LOC107743765,LOC107675026 coding downstream 105646 12422750 ~ 12430535 (+)
G195047 NA non-coding upstream 19930 12249060 ~ 12249755 (+)
G195016 NA non-coding upstream 93566 12174394 ~ 12176119 (+)
G195002 NA non-coding upstream 124478 12145001 ~ 12145207 (+)
G194989 NA non-coding upstream 129465 12140012 ~ 12140220 (+)
G194828 NA non-coding upstream 230957 12038503 ~ 12038728 (+)
G195083 NA non-coding downstream 53952 12371056 ~ 12371285 (+)
G195084 NA non-coding downstream 56906 12374010 ~ 12374280 (+)
LOC117598562 NA non-coding downstream 134789 12451893 ~ 12453678 (+)
G195225 NA non-coding downstream 233030 12550134 ~ 12550360 (+)
G195287 NA non-coding downstream 326164 12643268 ~ 12643526 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 184326 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 648416 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 983417 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 1021472 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 1623138 10644826 ~ 10646547 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 155575 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 641831 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 1166197 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 1696469 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1970255 14287359 ~ 14324281 (+)

Expression


Co-expression Network