dcxr (dcxr)


Basic Information

Item Value
gene id dcxr
gene name dcxr
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5436259 ~ 5443878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915966.2
GGATAAATCCCGCTGCCGCTCACTGCGCCGCTACCCGCCGCGAGGAAGCAGCTGCAGCCGCTGGTGCAGCTCTCACGCGTTAACCAACCACTTTACACCCGTAACCATGGAGATCACGTTCACTGGCAAGCGTGCGCTCGTGACAGGCGCCGGAAAAGGCATCGGGCGAGCCACAGCTCTGGCTTTAGCGCGCGGGGGAGCGGAAGTGACAGCAGTCACGCGCACACAGGCCGACCTGGAGACGCTCGTGCGCGAGTGTCCTTCTGttaagcctgtgtgtgtggacttgGCGGACTGGGATGCTACGGAGCGTGCGCTGAAGGACGTGGGTCCTATCGACCTGCTGGTGAACAACGCAGGCTGCGCCATGCTGCAACCCTTCCTCGAGATCACGCAGGACAGCTTCGATAAGTCTTTCGACGTCAACGTGAAAGCAGCTCTGCATGTCACACAAATTGTGGCCAGAGGAATGAAAGCCAGGGGAAGTGGTGGCTCCATCGTGAACATCTCCAGCCAAGCTTCACACCGCGCCTTTAAAGACCATGCTGTGTACTGTGCTACCAAAGGAGCTCTCGACATGCTGACCAAAGTGATGGCTCTGGAGCTGGCGCCGTACCAGATCAGAGTGAATTCCGTAAACCCAACTGTGGTGATGACGGACATGGCAAAAATAGGATGGAGTGACCCCGCGAAGGCTAACACCATGATATCACGTATCCCGATGGGCAAATTTGCTGaagTGGAGGATGTGGTCCATGCCATACTGTTTCTGCTTAGTGACAAGAGTGCAATGACTAATGGAGCGTTCCTGCCGATAGATGGAGGCTTCCTGGCCTGCTAGACTGGAGTCCTCTGTGGGAATCTCTAGGAGGATTGACAGCTTGAAGGAAAAACATTAAGTGCAAACACTTGCATATCAACACCTACAGTGTACTCCACATGCGTACTCAAGTAATGGGTCATTTAAGTTGCTGCAAGTCTCCTTGGCCTGTGatagtaattcacagtcagagTTTTGGACACATACGTCATCAAGTCTTACCAGAAAAACTGTATCGTAGAGTGGCGAGAGGTTTTACTCTTTCACCTAGTACTGAGTAACTGTGAAAATCTGTAATATTGTCTGTAATACTGGGCTGTAATCATGGGCTGAATTCAATTCTTCTCGAAGGTATATTGACAAGAAATGTGTATCGCAACTCCTCACATTCAGCCAGCGTGCACTCTTTCCAGAAGAGCAGGAGAAATAAGCTCATAATCAAAGAGAACAATTACACAAGTATACAAGATACAATTATTAAATTGGCTAAACAGCTGTCTTTAGAAACTGTAGTCTATGACACTAATCTTATATTATTtaggcttttatttttatatatttggcAAGATGGCACTCAGTGTCAGGACACTACCCATCAGTAGTGCATAATGCAATGGAGGCACATTTTTCAGAGGCCGTTTGGTGTGCTGAAATCTCTTTGCTTTGCTCCTTTCCCCCCCTTACAGCCTACACAATAATCCTCTGTCCTCTGCTAATTGGGAATTAACAGCATTAGCCAGTAACACCCGTGCTCCTCAGGCTCTGCCTTTTGACATCATTACTCTGAACCTCAAGCTTGactaagaaatgaaataaagctacaaataaaaaaaaa

Function

symbol description
dcxr Predicted to enable L-xylulose reductase (NADP+) activity and carbonyl reductase (NADPH) activity. Predicted to be involved in glucose metabolic process and xylulose metabolic process. Human ortholog(s) of this gene implicated in pentosuria. Orthologous to human DCXR (dicarbonyl and L-xylulose reductase).

NR:

description
L-xylulose reductase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K03331 DCXR; L-xylulose reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915966.2 True 1655 mRNA 0.48 8 5436259 5443878

Neighbor

gene id symbol gene type direction distance location
rfng rfng coding upstream 1780 5422799 ~ 5434479 (+)
col1a1b LOC108273947,LOC107708989,LOC107693674 coding upstream 31453 5383011 ~ 5404806 (+)
lsm12b lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 152109 5267793 ~ 5284150 (+)
tanc2b tanc2b,LOC108274047,LOC107562025,LOC107708983 coding upstream 185747 5077518 ~ 5250512 (+)
cntd1 cntd1 coding upstream 366036 5063595 ~ 5070223 (+)
cabp5a cabp5a,LOC108273649,LOC108425940,LOC107562016,LOC107708978,LOC107693687,LOC108246804 coding downstream 20327 5464205 ~ 5470108 (+)
nif3l1 nif3l1 coding downstream 33453 5477331 ~ 5484677 (+)
tbx6 tbx6 coding downstream 51028 5494906 ~ 5499745 (+)
LOC113527309 LOC108274209,LOC108273638 coding downstream 182513 5626391 ~ 5665967 (+)
mapk7 mapk7 coding downstream 238163 5682041 ~ 5689581 (+)
G191273 NA non-coding upstream 53450 5382597 ~ 5382809 (+)
G191267 NA non-coding upstream 69901 5366136 ~ 5366358 (+)
G191266 NA non-coding upstream 72756 5363288 ~ 5363503 (+)
G191258 NA non-coding upstream 126885 5308219 ~ 5309374 (+)
G191032 NA non-coding upstream 153616 5269247 ~ 5282643 (+)
G191310 NA non-coding downstream 68813 5512691 ~ 5513155 (+)
G191375 NA non-coding downstream 152844 5596722 ~ 5667602 (+)
G191329 aldoa,aldoab,LOC107581735 non-coding downstream 170529 5614407 ~ 5619108 (+)
G191386 NA non-coding downstream 227136 5671014 ~ 5671252 (+)
G191387 NA non-coding downstream 228264 5672142 ~ 5672495 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 95696 5330042 ~ 5340563 (+)
gngt2b NA other upstream 131350 5303077 ~ 5304909 (+)
G190865 NA other upstream 596890 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 840230 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 1505816 3903347 ~ 3930443 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 286276 5730154 ~ 5740905 (+)
G191581 NA other downstream 525865 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 1281443 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 1378862 6822740 ~ 6836383 (+)
tfam tfam other downstream 1984667 7428545 ~ 7436372 (+)

Expression


Co-expression Network