klhl11 (klhl11,LOC107674689,LOC107556757,LOC107551837)


Basic Information

Item Value
gene id klhl11
gene name klhl11,LOC107674689,LOC107556757,LOC107551837
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1600541 ~ 1608897 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927863.2
ATGGCCGCCGTGCTTAATTCGGAGTATAACTCGGAGCGCGTTTGTTACGGTTCCGACCCGCAGAGGTGCGCGACATGGCGGCGGCGGGCGGCGGCGGCCCCAAACTCGAGCCCAAACTCGAACTCGAACTCGAATCCAGGCCGGAGCTCAGGTTCGGGTTCAGGCGCGAGCCCGGAGGAGGCGCACCGGCCCGCggcggcagcagcagcagcgtcGGCGGCTCTGGCGAGTGACGGTGAACCGGAGGAGGCCGAGCAGTTCTCCTCAGCGCTGCACTGCTCGGAGCTCGCGCGGCGGCAGAACGAGCAGCGGAAGCTCGGGCTCTTCTGCGACGTCACGCTGGCGTtcagcggcggcggcggcggcggaggaggaggaggaggaggaggagagggcgCGGGCAGTGGGTTCGAGCTCGGCGCGCACCGGTCTGTGCTCGCAGCCGCCACCGATTACTTCACCCCGCTGCTCGGGGGCCAGTTCGCGGAGTCCGTGTCGCGGCGCGTGGAGATGAAGGAGTGGAGCAGCGAGTCGGGGCCCGAGCGCGAGACCGTCGAGGGCGTCGTGCAGTTCATGTACACCGGAGAGATCCGCGTCAGCACGAGCAACGTGCACGAGGTGCTGGAGCTCGCGGACAGGTTCCTGCTGGTGCAGCTGAAGGAGTTCTGTGGGGATTTCCTGAAGCGGAAGCTGAGCCTGGCGAACTGCGTGGCCGTACACAGCCTGGCGCACATGTACACGCTGGACCAGCTGGCGTTGCGCGCCGCTGAAATGATACGGCGCAACTTCCACAGGGTGATCCAAGACGACGAGTTCTACACGCTGCCGTTCCACCTGGTGCGCGACTGGCTGAGCGACGCCGAGATCACCGTCGACTCGGAGGAGGTTTTGTTCGACGCCGTTGTCAAGTGGGTGCGTCGGGGCACTGAGGACCGCGAGAGGCACTTTGAGGAGCTTTTCCGCCTCCTTAGGCTGCCTCAGATCAAGCCCACTTACCTGACGAGGGTGGTGAAGAACGAGCCGCTCGTGGCGCGGAACGAGGCATGTCTCAAACTCGTCTCGGATGCTGTGGAGAGTCACGCCATCCGTTTTGAGAACCATAAAAAATCAGCATCTGATTCGGAATTCTGGGCCGCTTTTCAGCCTCGATTCGGACAAAACATGGACGTCATCATGGTGGTCGGTGGAGTTTCGGAAGGAGGCGACTATTTGAGCGAGTGTGTCGGGTATTTTGTGTATGAAGATCGTTGGGTGAATCTTCCACACATCCATAACCACCTTGATGGCCACGCAATCGCAGTTACAGATTCGTACGTCTACGTCGCAGGATCTATGGAACCCGGATTCGCCAAAACAGTGGAAAGATACAATCCGAATCGCAACACTTGGGAGCAAGTGAGCAATCTCACGACTCGGAAGCACTCGTTCGGCCTGACGTGTGTCAAAAATATCCTCTACAGCATCGGAGGGCACGGGAATTTCAGCCCGGGATTCAAGGATGTAAGTGTTTACGAACCGGAGCAGGACAAATGGCACAATTTGGAATCAGCACCAAAAATCTTGCGAGACGTGAAAGCGATTAGCGTTGAAGATCGCTACGTTTACGTAACGGCGAGGACCCCCGTGGATACGGACAACGATGATGGGCTCAAGACGGTGACGACGCGCTACGACACCGAGAGCCGCCAGTGGCAGGAAGTCGATTCTTTGCCCCTGATTGACAATTACTGCCTCTTCCAGATGGCTGTGGCGTCCACAAATTTTTACCACACCGCATCATGCTGTCCGAGAAGCTACACTAATGTCCGAGATGAAGCCGCACGGCAGAAAATTAGTGCCCGAATCTCAGATGAGATCCTTGAAAGCCTGCCTCCGGAGGTCACCAGCGTTGAAGGCGCCGCTGTGTGCTTCCTCGGAGACGACGTGTTTGTCATCGGTGGCTGGAAAAACAGCGACGACGTGGACAAGCAGTATCGAAAAGAGGCGTACCGTTACTGCGCTGAGAGGAAACGATGGATGCTGCTTCCTCCGATGCCGCAGCCTCGTTGCCGGGCGACCGCGTGCCACGTCCGTATCCCCTACCGCTTCCTGTATGGGTGCCAGAGGTACCCGATGCCGCAGAATTTAGCGCGACAGCGAGACCGGATGCAGCAGATGCAGCAGCTTCATCGGCGCACGCTCACCCTGCGCAGGCAGCTGCAGTCTCAGATCGAATGCTGAAGGAATAAACAATATTCGGCGGTGTTTTGGGTCCAAGCTGAAGGAAGAGAGTTCTCTGGGCCATCAGGTGGTGATGAGGAGCTGCTGTGATTTTGTGAATACCATCAACATCTTTTGGTCCAGCCTTCATCTTCTCACAGAGGAAAATGAGGTCGGAAACTTGATCGTCATTGTGTGTTGAAAGTAATGGCAAAAACGAATGCTAGAAAAGGTCCTCCAGGCCACTTGGGAGCGCTGATGAACGAAGAAATGTGATGTTCATTTTCATTGTGTATTAACGCttctttgtatatttatttgtcaACTTTTTGGTTTCTGGGGATGAAATTGAAGCCTCAGTGAGAGCAGCATGAGATCTGCTGGTCTGGATTGAAGGAGTCAGAGATAGTCTGTGACAATCGCCTGTGTTTTGGGTTCAGCGTGAATGTCCTCAGGTCCACTGGGGGGTGACGATGAACAAGGAGCTATAAATAACATTCCACCATTACGGGTTTCATATTGTGTTCTGTATATGGTATTTGTCAAGCTTTTCGTAGAGACCGACTGATGTGAAGATTTTGTCGCTTTTAAGGAGCTAAAAATTCTCAAAATTTAGGCAAGCACCAGTAGGTTTTTAGGCAAACTCATAAACAACAGTGACAAAATCTCTAAACGTAACTTGAGCTTTTTGCTTAAATGTCAAGAGATGGCGAGTTTAAATCCTGATGATGTCGCTGTTGTTGAACTACGTTCATACACAGCATCACTTCCTGCGAGTGATTAGCCCCGACCCCAACGTTAGCGCCTGCATCGTGTTTGATGGCTGTTCAAAATAGCGTCACGTACGTGAATAAGGTTTtcgtgttaaaaaaaaatgtagacatATTTCCAGTGATTGCAGTAAGCCTGTGAAGAGTGCAATATAAAACGCGTATATAACAGTCAGGCCGTAGATTTCTCAGTTAAAGTTTCTGCTAAGAATGTGAGCTTATgcatattatataatgtataggaaaatgtttcataattctctctctctctctctctctctctctctctctctctctct

Function

symbol description
klhl11 Orthologous to human KLHL11 (kelch like family member 11).

NR:

description
PREDICTED: kelch-like protein 11

GO: NA

KEGG:

id description
K10449 KLHL11; kelch-like protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927863.2 True 3268 mRNA 0.54 3 1600541 1608897

Neighbor

gene id symbol gene type direction distance location
LOC117598650 NA coding upstream 34778 1564045 ~ 1565763 (+)
LOC113535294 LOC108273771,LOC108273772 coding upstream 108330 1488171 ~ 1492211 (+)
LOC113535212 NA coding upstream 145021 1404288 ~ 1455520 (+)
LOC113530124 LOC108273772,LOC108273771 coding upstream 247568 1344046 ~ 1352973 (+)
LOC113534962 NA coding upstream 259622 1290300 ~ 1340919 (+)
LOC117598580 NA coding downstream 101052 1709949 ~ 1714497 (+)
LOC113535035 NA coding downstream 229866 1838763 ~ 1844749 (+)
LOC113535036 NA coding downstream 237331 1846228 ~ 1851194 (+)
foxh1 LOC108273808 coding downstream 266757 1875654 ~ 1882978 (+)
stat5b LOC108273804,LOC108431398,LOC107716464,LOC107653267 coding downstream 296311 1905208 ~ 1919420 (+)
G189170 NA non-coding upstream 53959 1545798 ~ 1546582 (+)
G188770 NA non-coding upstream 549921 1046500 ~ 1050620 (+)
G188761 NA non-coding upstream 624676 974797 ~ 975865 (+)
G188749 NA non-coding upstream 676051 924285 ~ 924490 (+)
G188747 NA non-coding upstream 677736 922605 ~ 922805 (+)
G189190 NA non-coding downstream 929 1609826 ~ 1612220 (+)
G189245 NA non-coding downstream 166708 1775605 ~ 1776432 (+)
G189280 NA non-coding downstream 254305 1863202 ~ 1863652 (+)
G189293 NA non-coding downstream 278753 1887650 ~ 1887870 (+)
LOC117598584 NA non-coding downstream 315087 1923984 ~ 1925704 (+)
LOC113535146 LOC108261429 other upstream 626323 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 815550 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1378122 137521 ~ 222419 (+)
LOC117598558 NA other downstream 328790 1937687 ~ 1952224 (+)
pyyb NA other downstream 916159 2525056 ~ 2528820 (+)
G189864 NA other downstream 1151796 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1361228 2970125 ~ 3021609 (+)
G190028 NA other downstream 1629547 3238444 ~ 3239216 (+)

Expression


Co-expression Network