buc2l (LOC108273451)


Basic Information

Item Value
gene id buc2l
gene name LOC108273451
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2119202 ~ 2123272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928002.2
TTTAAACTCAGGCGACGAAGCCATTTTgggtgtttttctttgttcaagACGCAATATATTTTTTTTCCTCTCTTGCCTCTTGAAGATAAAGCTGAAGATATGGTTGTTGCAGCTTCCCAGAATCCACCTGGAGTTGAAACTCATGCTCAAAGCATTCCTCCTGGGATGACACCAGCGCAGGGTTCACGACATCCAGGTCCTAGTTCCTACAGAGGACCCAACCCGAATCACCTGGACCGTCAACAGCAAGGCAACTGGCCCTTTTTCTACGTTCAACCCTCACAGCCTTACATGCCATGCCAGTGGCCCATGCCGATGCCTTATGTTCCCTATGGAGGCTTCCCTGGGTTGGGTTATGGCATGGTGTTGCCACCCTTCCCTCCTGCTTCATATGTAGAAGCTCCCGGCTACATCCTTCCCCACACCCAGCTGCACATGGTCGACTACAGACGCATGATGACCCCCCATTTGGCGCCCACAATGGCATATCAAGCTCGCCGTTTCCGTTACCAGCACACGACACCATCTGGTCGTGTCATGGTCAGTTCAGAAGTTCAAACCGAGCCTGTGTGTACCGACTCACAACAACACAGCTGCAATGCTGTGACAAGCACCCAGAGCAGCTCTGAATCAGGAAGGAGTACTGACTCTACTAGTGTTCTCTCATCACCTAGACCAAATGAAGGCACATCTGCCTGTCCTGAAGAAAAGGGCTGCCCAATGTTGTCAAGCAAAATGGATGGAGAAATGGCCAGAATTGCTACTGTTCAAAATGGTATTCTCTTCCAAGCGGAGGAGGTGCGGATCGAGTGTAGTGGATCCCCTTCTGCAGTGAAGATCACACATTCCACGGAGACCACTGAGCTTGCCAGCAATGCTGATGGTGAGCTCTTGCAGTGTAATGTGGGATCTGCAGAAGATGTGGTCTTGAGGTGTTTCCAGCCTGTGCCATTTGGGGATgaggaggaaaggaaaggtACAAAAGACCTCAGCCATTTGGAGGACCCTTGCCCTGATATTCTAATGGTTTCTTGCCCCTCAAATGGTTCGGTAAGCCCACTAGAAGGATCAATTGTTGCACCTGTTGAACCAGTCAACAGCACATTGGTTGTTCAAGGGGATCCCAGCTTGGTAAAAAGTGCTCAGGATATCTGTGGGAACCCCAAGAACATTCACTTCAAAATCTTGCGATTACCTCTTGACCTGCAGTGCTTGGATGAGTTGAGGCAGATGGAGGCCTCCATCTGGTCTGTAGAGTCTTTGATGCCTTATGTGCCTACTGCTGAGTGGATGATGCAAAATAGCCTGGTGACCCCTGGGAAACCATCCCTTGCCACAGTAATGGAGGTTCCTGCTGAGGATCCTCTACAATCAAATCAATCTCCAGCAGATGCACCACCATCTATGTTGAAAGCTGGATCAGTGATTGAACTTGATGGCCAAGACTCGATGACCTCACTTGAATCCCTTCCACCATTCCTTCCTTCAGCCAGCAGACTAGCAGACTTTGGTAATGCATATTACAATAAACTATCCTCTAATGTGCAGATCAGCAACCCTGGTAACTGGGCGAAGGGGCAACCTGAAGCCCATCAGGACAGCAAAGTCCAGTCTGGACACCAAAGTCCCAGTTCTACTCCTAAGAAATTGAAAGAGGAGATGACCAACCAGAGTGTTATGATCTCTGGGGTTAGCCTTTCTGATAAGGCGCATAGCTCGGCTCATTTGTTTCCCGAGTCACCTCTCAAACACAAAGTACGCATGTGTAAAAGCTGTTCAGTGAAACGCAGTGCAGACATCTGCTCTGGTAGTCCAAGCAGCAAGGCTGGCTGCATGAAACGGCACAAGGTTTCTCGTACTCATTTAACGGGGGATAAGGTCAAGGTTCCGTTGTGTGCCAAGTGCATGCGTGATCCTGAGAAAAAAGCTAGGTGCAAAGTGGCTGCTATTACAGCCAACCCTGAGTTGAACAACACGAACAATGAAACGAGTGAAGTGTCAGAAAATGATGTATATCCTTCAAAAATGTGCTCAAAAAAGTTGTTCAGTATTCAAAATCCCCATTCGGGCAAACATTTGGAGAAATGCCCAATGTCCCACCAGTCCAAGCTGAGAGAGCAGAATTGCTCATGTGAGGATATGAGAGCTTCACATTCCACTTCAGCATGGAACAGTAATGGACATAGCCAGCATGATGACCTAACTTGGGAGAGAAATGAGGAAAACCTGGCTCTTTctgtgatggagagatggagggatacGGAGCAGAGATTCATTGGTGAGAAATCATGGAGAGGAAGTATGCAAGTGTCCGATAGCGAGAGTACCAAAAGTGGAGGAAAGATGAGGACCcgcaataaacaaaaacaatgtacaCAATCACTAGAAGTTCACAGAAGAGACACGAGATACTGATGACACTATTTGCACAGTGACTAAATGGACAAGGGCACGTTTTAAGATCACGTTTTAAATGCCACAagtaattttttccccacttcctttaaaaaaaagaaaatcacagctCACTATTTTATACAGTGATTGAATAAAGCACTTTTGATGTTTTCCTTA
>XM_026928003.2
TTTAAACTCAGGCGACGAAGCCATTTTgggtgtttttctttgttcaagACGCAATATATTTTTTTTCCTCTCTTGCCTCTTGAAGATAAAGCTGAAGATATGGTTGTTGCAGCTTCCCAGAATCCACCTGGAGTTGAAACTCATGCTCAAAGCATTCCTCCTGGGATGACACCAGCGCAGGGTTCACGACATCCAGGTCCTAGTTCCTACAGAGGACCCAACCCGAATCACCTGGACCGTCAACAGCAAGGCAACTGGCCCTTTTTCTACGTTCAACCCTCACAGCCTTACATGCCATGCCAGTGGCCCATGCCGATGCCTTATGTTCCCTATGGAGGCTTCCCTGGGTTGGGTTATGGCATGGTGTTGCCACCCTTCCCTCCTGCTTCATATGTAGAAGCTCCCGGCTACATCCTTCCCCACACCCAGCTGCACATGGTCGACTACAGACGCATGATGACCCCCCATTTGGCGCCCACAATGGCATATCAAGCTCGCCGTTTCCGTTACCAGCACACGACACCATCTGGTCGTGTCATGGTCAGTTCAGAAGTTCAAACCGAGCCTGTGTGTACCGACTCACAACAACACAGCTGCAATGCTGTGACAAGCACCCAGAGCAGCTCTGAATCAGGAAGGAGTACTGACTCTACTAGTGTTCTCTCATCACCTAGACCAAATGAAGGCACATCTGCCTGTCCTGAAGAAAAGGGCTGCCCAATGTTGTCAAGCAAAATGGATGGAGAAATGGCCAGAATTGCTACTGTTCAAAATGGTATTCTCTTCCAAGCGGAGGAGGTGCGGATCGAGTGTAGTGGATCCCCTTCTGCAGTGAAGATCACACATTCCACGGAGACCACTGAGCTTGCCAGCAATGCTGATGGTGAGCTCTTGCAGTGTAATGTGGGATCTGCAGAAGATGTGGTCTTGAGGTGTTTCCAGCCTGTGCCATTTGGGGATgaggaggaaaggaaaggtACAAAAGACCTCAGCCATTTGGAGGACCCTTGCCCTGATATTCTAATGGTTTCTTGCCCCTCAAATGGTTCGGTAAGCCCACTAGAAGGATCAATTGTTGCACCTGTTGAACCAGTCAACAGCACATTGGTTGTTCAAGGGGATCCCAGCTTGGTAAAAAGTGCTCAGGATATCTGTGGGAACCCCAAGAACATTCACTTCAAAATCTTGCGATTACCTCTTGACCTGCAGTGCTTGGATGAGTTGAGGCAGATGGAGGCCTCCATCTGGTCTGTAGAGTCTTTGATGCCTTATGTGCCTACTGCTGAGTGGATGATGCAAAATAGCCTGGTGACCCCTGGGAAACCATCCCTTGCCACAGTAATGGAGGTTCCTGCTGAGGATCCTCTACAATCAAATCAATCTCCAGCAGATGCACCACCATCTATGTTGAAAGCTGGATCAGTGATTGAACTTGATGGCCAAGACTCGATGACCTCACTTGAATCCCTTCCACCATTCCTTCCTTCAGCCAGCAGACTAGCAGACTTTGGTAATGCATATTACAATAAACTATCCTCTAATGTGCAGATCAGCAACCCTGGTAACTGGGCGAAGGGGCAACCTGAAGCCCATCAGGACAGCAAAGTCCAGTCTGGACACCAAAGTCCCAGTTCTACTCCTAAGAAATTGAAAGAGGAGATGACCAACCAGAGTGTTATGATCTCTGGGGTTAGCCTTTCTGATAAGGCGCATAGCTCGGCTCATTTGTTTCCCGAGTCACCTCTCAAACACAAAGTACGCATGTGTAAAAGCTGTTCAGTGAAACGCAGTGCAGACATCTGCTCTGGTAGTCCAAGCAGCAAGGCTGGCTGCATGAAACGGCACAAGGTTTCTCGTACTCATTTAACGGGGGATAAGGTCAAGGTTCCGTTGTGTGCCAAGTGCATGCGTGATCCTGAGAAAAAAGCTAGGTGCAAAGTGGCTGCTATTACAGCCAACCCTGAGTTGAACAACACGAACAATGAAACGAGTGAAGTGTCAGAAAATGATGTATATCCTTCAAAAATGTGCTCAAAAAAGTTGTTCAGTATTCAAAATCCCCATTCGGGCAAACATTTGGAGAAATGCCCAATGTCCCACCAGTCCAAGCTGAGAGAGCAGAATTGCTCATGTGAGGATATGAGAGCTTCACATTCCACTTCAGCATGGAACAGTAATGGACATAGCCAGCATGATGACCTAACTTGGGAGAGAAATGAGGAAAACCTGGCTCTTTctgtgatggagagatggagggatacGGAGCAGAGATTCATTGGTGAGAAATCATGGAGAGGAAGTATGCAAGTGTCCGATAGCGAGAGTACCAAAAGTGGAGGAAAGATGAGGACCcgcaataaacaaaaacaatgtacaCAATCACTAGTTCACAGAAGAGACACGAGATACTGATGACACTATTTGCACAGTGACTAAATGGACAAGGGCACGTTTTAAGATCACGTTTTAAATGCCACAagtaattttttccccacttcctttaaaaaaaagaaaatcacagctCACTATTTTATACAGTGATTGAATAAAGCACTTTTGATGTTTTCCTTA
>XM_034309385.1
TTTAAACTCAGGCGACGAAGCCATTTTgggtgtttttctttgttcaagACGCAATATATTTTTTTTCCTCTCTTGCCTCTTGAAGATAAAGCTGAAGATATGGTTGTTGCAGCTTCCCAGAATCCACCTGGAGTTGAAACTCATGCTCAAAGCATTCCTCCTGGGATGACACCAGCGCAGGGTTCACGACATCCAGGTCCTAGTTCCTACAGAGGACCCAACCCGAATCACCTGGACCGTCAACAGCAAGGCAACTGGCCCTTTTTCTACGTTCAACCCTCACAGCCTTACATGCCATGCCAGTGGCCCATGCCGATGCCTTATGTTCCCTATGGAGGCTTCCCTGGGTTGGGTTATGGCATGGTGTTGCCACCCTTCCCTCCTGCTTCATATGTAGAAGCTCCCGGCTACATCCTTCCCCACACCCAGCTGCACATGGTCGACTACAGACGCATGATGACCCCCCATTTGGCGCCCACAATGGCATATCAAGCTCGCCGTTTCCGTTACCAGCACACGACACCATCTGGTCGTGTCATGGTCAGTTCAGAAGTTCAAACCGAGCCTGTGTGTACCGACTCACAACAACACAGCTGCAATGCTGTGACAAGCACCCAGAGCAGCTCTGAATCAGGAAGGAGTACTGACTCTACTAGTGTTCTCTCATCACCTAGACCAAATGAAGGCACATCTGCCTGTCCTGAAGAAAAGGGCTGCCCAATGTTGTCAAGCAAAATGGATGGAGAAATGGCCAGAATTGCTACTGTTCAAAATGGTATTCTCTTCCAAGCGGAGGAGGTGCGGATCGAGTGTAGTGGATCCCCTTCTGCAGTGAAGATCACACATTCCACGGAGACCACTGAGCTTGCCAGCAATGCTGATGGTGAGCTCTTGCAGTGTAATGTGGGATCTGCAGAAGATGTGGTCTTGAGGTGTTTCCAGCCTGTGCCATTTGGGGATgaggaggaaaggaaaggtACAAAAGACCTCAGCCATTTGGAGGACCCTTGCCCTGATATTCTAATGGTTTCTTGCCCCTCAAATGGTTCGGTAAGCCCACTAGAAGGATCAATTGTTGCACCTGTTGAACCAGTCAACAGCACATTGGTTGTTCAAGGGGATCCCAGCTTGGTAAAAAGTGCTCAGGATATCTGTGGGAACCCCAAGAACATTCACTTCAAAATCTTGCGATTACCTCTTGACCTGCAGTGCTTGGATGAGTTGAGGCAGATGGAGGCCTCCATCTGGTCTGTAGAGTCTTTGATGCCTTATGTGCCTACTGCTGAGTGGATGATGCAAAATAGCCTGGTGACCCCTGGGAAACCATCCCTTGCCACAGTAATGGAGGTTCCTGCTGAGGATCCTCTACAATCAAATCAATCTCCAGCAGATGCACCACCATCTATGTTGAAAGCTGGATCAGTGATTGAACTTGATGGCCAAGACTCGATGACCTCACTTGAATCCCTTCCACCATTCCTTCCTTCAGCCAGCAGACTAGCAGACTTTGGTAATGCATATTACAATAAACTATCCTCTAATGTGCAGATCAGCAACCCTGGTAACTGGGCGAAGGGGCAACCTGAAGCCCATCAGGACAGCAAAGTCCAGTCTGGACACCAAAGTCCCAGTTCTACTCCTAAGAAATTGAAAGAGGAGATGACCAACCAGAGTGTTATGATCTCTGGGGTTAGCCTTTCTGATAAGGCGCATAGCTCGGCTCATTTGTTTCCCGAGTCACCTCTCAAACACAAAGTACGCATGTGTAAAAGCTGTTCAGTGAAACGCAGTGCAGACATCTGCTCTGGTAGTCCAAGCAGCAAGGCTGGCTGCATGAAACGGCACAAGGTTTCTCGTACTCATTTAACGGGGGATAAGGTCAAGGTTCCGTTGTGTGCCAAGTGCATGCGTGATCCTGAGAAAAAAGCTAGGTGCAAAGTGGCTGCTATTACAGCCAACCCTGAGTTGAACAACACGAACAATGAAACGAGTGAAGTGTCAGAAAATGATGTATATCCTTCAAAAATGTGCTCAAAAAAGTTGTTCAGTATTCAAAATCCCCATTCGGGCAAACATTTGGAGAAATGCCCAATGTCCCACCAGTCCAAGCTGAGAGAGCAGAATTGCTCATGTGAGGATATGAGAGCTTCACATTCCACTTCAGCATGGAACAGTAATGGACATAGCCAGCATGATGACCTAACTTGGGAGAGAAATGAGGAAAACCTGGCTCTTTctgtgatggagagatggagggatacGGAGCAGAGATTCATTGAGAAATCATGGAGAGGAAGTATGCAAGTGTCCGATAGCGAGAGTACCAAAAGTGGAGGAAAGATGAGGACCcgcaataaacaaaaacaatgtacaCAATCACTAGAAGTTCACAGAAGAGACACGAGATACTGATGACACTATTTGCACAGTGACTAAATGGACAAGGGCACGTTTTAAGATCACGTTTTAAATGCCACAagtaattttttccccacttcctttaaaaaaaagaaaatcacagctCACTATTTTATACAGTGATTGAATAAAGCACTTTTGATGTTTTCCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928002.2 True 2574 mRNA 0.47 5 2119202 2123272
XM_026928003.2 False 2571 mRNA 0.47 5 2119202 2123272
XM_034309385.1 False 2571 mRNA 0.47 5 2119202 2123272

Neighbor

gene id symbol gene type direction distance location
LOC113535332 LOC108274177 coding downstream 40235 2052784 ~ 2078967 (-)
kcnh4b LOC108273803,LOC103352817 coding downstream 136325 1941696 ~ 1982877 (-)
oplah oplah coding downstream 215206 1888816 ~ 1903996 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding downstream 296388 1812567 ~ 1822814 (-)
LOC113535291 LOC108273550 coding downstream 315088 1776804 ~ 1804114 (-)
LOC113534974 LOC108273474 coding upstream 1463 2124735 ~ 2132242 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding upstream 43154 2166426 ~ 2171691 (-)
emc9 emc9 coding upstream 92129 2215401 ~ 2224300 (-)
LOC117598663 NA coding upstream 120603 2243875 ~ 2245715 (-)
LOC117598634 NA coding upstream 122522 2245794 ~ 2269055 (-)
G189451 NA non-coding downstream 57937 2048830 ~ 2061265 (-)
G189412 NA non-coding downstream 129047 1989519 ~ 1990155 (-)
G189411 NA non-coding downstream 130971 1987335 ~ 1988231 (-)
G189388 NA non-coding downstream 193501 1924026 ~ 1925701 (-)
G189386 NA non-coding downstream 195835 1919470 ~ 1923367 (-)
G189512 NA non-coding upstream 23440 2146712 ~ 2146915 (-)
G189521 NA non-coding upstream 37358 2160630 ~ 2162571 (-)
G189547 NA non-coding upstream 157274 2280546 ~ 2280753 (-)
G189702 NA non-coding upstream 270754 2394026 ~ 2399476 (-)
G189717 NA non-coding upstream 479921 2603193 ~ 2604096 (-)
ppp1r16a ppp1r16a other downstream 249209 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 345682 1760834 ~ 1773520 (-)
G189199 NA other downstream 548129 1568286 ~ 1571073 (-)
G189180 NA other downstream 553942 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 1284442 748738 ~ 834760 (-)
LOC113547489 NA other upstream 71072 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 467965 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 662809 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 669774 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 728783 2852055 ~ 2855493 (-)

Expression


Co-expression Network