LOC113535035


Basic Information

Item Value
gene id LOC113535035
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1838763 ~ 1844749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928117.2
GACAAGGAACAACAACGTCTTGTTGAAAAGCATTACTGAAAAGCAGGATGGAGATGAGACAGGTCATAGTTAAAAATTTCCATCTGGTTTCATATAACAGGTTTAATTCCTGTGAAGACAATGATGACAAGGATGAGGACAACCTGGCCAATCAGAGCATCAGGAACATCAGCTCAGGATGCAACACTTCAGGGAGCAGGTATTACAGACtttctgcagtgtgtttgaccctgctgtgtgttctcctgATTTCTGCTGTCTCAGTGCTGTGGGTCAAGTTCAACAACCTGACtacaaaaaacactgatttaCAAACTCATTACAGCAATCTCATTCTTGAGAAAGAGCAGCTCCAAACCAGCTACGGAAACCTGACTTTTGAAAGGAACCAACTTCAGATAATGTACAGTAACCTGAACAGAGACAAAAACCAGTTACAGGCCAGCTACAACAACCTAACTGTCGAGAGAGACCGGTTACAGGCCAGCTACAACAACCTGACTGTCGAGAGAGACCGGGTACAGACCAGCTACAACAAACTGACTGTCGAGAGAGACCGGTTACAGACCAGCTACAACAACCTGACTGTCGAGAGAGACCGGTTACAGACCAGCTACAACAACCTGACTGTTGAGAGAGACCGGGTACAGACCAGCTACAACAACCTGTCTGtcgagagagaccagttacagaccagcTACAACAAACTGTCTGtcgagagagaccagttacagaccagcTACAACAAACTGTCTGtcgagagagaccagttacagactAGCTACAACAACCTGTCTGtcgagagagaccagttacagaccagcTACAACAACCTGTCTGtcgagagagaccagttacagaccagcTACAACAAACTGTCTGtcgagagagaccagttacagactAGCTACAACAACCTGACTATTGAGAGAGACAGGTTACAGACCAGCTACAACAACCTGATCATGGTGAGAGACCAGGACCAGGCGAAATGTAAAGAACTGGCTAATGAACTGGCGAAACTGCAGACAAACTACAGCACCATGGCAAACCAGAAAGACCAGTTGCAGAAGGAGAAAGATGAAATTCAGAAAAGGTTGCGAGAGATAGCTGCACAGGCCAAACTAGGCTGGGTCTATTTCAGCTCCAGTCTTTACTTCATCTCTACTGAGAAGAAAAGCTGGAATGAGGCCAGAGCGGACTGCAGAAAGAAGGGAGCAGACCTCGTGATCATCAAGACCAAAGAGGAAGAGGAGGTCCTTGTTAAGCAGCTGGGCAGCGATAAGGCTTGGATTGGTTTAAATGACAGACCCGTAGAGGGGACCTGGAAATGGGTGGATGGTACAGCACTGACCACTGCGTACTGGGCTCCGGGGGAACCCAATAATTCAGGAAATGAGGACTGTGCTGAGCTTTGGGGTCTTCTGGATAAACAGGGTTGGAACGACCGTCCGTGCAACGACGGAGTGAGATGGATCTGTAAGAAACCTTTTCGGACTTCTCAGTGATTAAACTCAGCCTTCTGTCAGCAGCGACCTCCACCGACTGTGTCACAAAAACACGCTTGAGTACCCCATCCACTTATAATATTACTCTAACTAGCTATCTAGTGTAAGTAGGTAATATTTAGGTACTGCAgtaatgtctctctctataaCTTTGGCTTTTGTCACagcttattttattaaatttatgcAGTGGTAGTACTACTAAGCTagcaccagccactttattaggaacacctgtacacctgctcattaatgcaattatccaatcatccaatcaCGTGTCAGCAGGGCAATGCATAGAatcttgcagatacaggtcaaaagcgtcagttaatgttcacaacaaacatcagtgAACTCAGTGatcaaactggacagttgaagattggaaaaacttGCCAAGTCTTTTTTCAATCTTGTCCAGTTTGGGGGAGTCtgttcccactgtagcctcagattcctgttcttggaggAAAGGAATGGAACCTGATGCTGTCTTCTGCTGTAAtagcctcaaggttcaacatgttgtgctttctgagatgcttttcctttcaccatgtttgtaaagagtgattatttgagttatcgtAGCCTTCGTCTCTGATCAACAAAACACTGGATGgcttttgtttttcgcaccattctgtgtaaactttagggACTGTGTGCGAAAatcccagcagtttctgaaatagtcaAATCAGTCTGGTGATGccagctgaagctcttgacttgtatctgcatgattttatgccacatgattggatcattgcatgaatgagcaggtgttcctaataaagtggacggtgaatGTATGTTCCTCTGTTGAAAACCATGAATGATCTGATGTAATGCTAAGCCAGCTGTCGAGAGTCAAAACCTTTTTTATAAAGCTGTTAGCTACCTAGCTATTTGTGTTTAGCTAAATTACTGTAATGACAGTTGTCTACGGatgcactgtatattttttcaaaactgtgtagaaaaaaacaaaacgctgACACATTTTCTTGAGCACCCAATTTAACTGTAGCAGTGAGACATTTCACATATAgttgtctgtgttttatttaaataaagttttatttcacTGCTTTAAAAATCAATGACATTAGCTTGAACTGTTTAGCTTTTCTTGAAGACTCTACCCAAGTTAAATTAAGTTAACaaggtttctctgtaaatgttagctagctacattagtgtACTTGATTAGGATATTTATGTGCCCAACACTCAGTCCACTATGTCACtgaatattttgtaaatgaaatcGGATTTTTTGGATTTCAGTGAATGCTAGAACACATTTCTAGTTGATTACCCTGTTAGCTTTGAGTACCATTAGCTTTGAGTACCATACGGCATTGCCAGTAAACAGGTAACAATGTATTATATATTCGAATGCTAAGACTTtgctctttatttatatttttaaatgaaaactgtGTTGCATAATataaatcttaaaataaatatttccctccattca

Function

GO: NA

KEGG:

id description
K06563 CLEC4M, DC-SIGN2, CD209, CD299; C-type lectin domain family 4 member M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928117.2 True 3003 mRNA 0.42 6 1838763 1844749

Neighbor

gene id symbol gene type direction distance location
LOC117598580 NA coding upstream 124266 1709949 ~ 1714497 (+)
klhl11 klhl11,LOC107674689,LOC107556757,LOC107551837 coding upstream 229866 1600541 ~ 1608897 (+)
aclyb LOC108431393,LOC103369716 coding upstream 236498 1579297 ~ 1602265 (+)
LOC117598650 NA coding upstream 273000 1564045 ~ 1565763 (+)
LOC113535294 LOC108273771,LOC108273772 coding upstream 346552 1488171 ~ 1492211 (+)
LOC113535036 NA coding downstream 1479 1846228 ~ 1851194 (+)
foxh1 LOC108273808 coding downstream 30905 1875654 ~ 1882978 (+)
stat5b LOC108273804,LOC108431398,LOC107716464,LOC107653267 coding downstream 60459 1905208 ~ 1919420 (+)
ghdc ghdc coding downstream 81650 1926399 ~ 1935741 (+)
LOC113535328 rab5c,LOC108274320,LOC103035226,LOC108431395 coding downstream 141771 1986520 ~ 1991390 (+)
G189245 NA non-coding upstream 62331 1775605 ~ 1776432 (+)
G189190 NA non-coding upstream 226543 1609826 ~ 1612220 (+)
G189170 NA non-coding upstream 292181 1545798 ~ 1546582 (+)
G188770 NA non-coding upstream 788143 1046500 ~ 1050620 (+)
G188761 NA non-coding upstream 862898 974797 ~ 975865 (+)
G189280 NA non-coding downstream 18453 1863202 ~ 1863652 (+)
G189293 NA non-coding downstream 42901 1887650 ~ 1887870 (+)
LOC117598584 NA non-coding downstream 79235 1923984 ~ 1925704 (+)
G189477 NA non-coding downstream 298403 2143152 ~ 2145756 (+)
G189555 NA non-coding downstream 450337 2295086 ~ 2295305 (+)
LOC117598477 NA other upstream 172950 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 864545 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1053772 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1616344 137521 ~ 222419 (+)
LOC117598558 NA other downstream 92938 1937687 ~ 1952224 (+)
pyyb NA other downstream 680307 2525056 ~ 2528820 (+)
G189864 NA other downstream 915944 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1125376 2970125 ~ 3021609 (+)
G190028 NA other downstream 1393695 3238444 ~ 3239216 (+)

Expression


Co-expression Network