LOC113535036


Basic Information

Item Value
gene id LOC113535036
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1846228 ~ 1851194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928118.2
CTTTTAACGGATGGATggggaacagacagacagacacattgTGCCTAGCACCAGATGAGACAGTTATTAATTGTGTGCCTATACGCAAGAGCCAATGAACGTAGGTACAAGACAGCTGACTTTAATCAACAGACGACTCAGTCTATGTCTCCGTGTCCATTCCCCAGGAGGAGGCACTACAAAGAGCCCTGTTACAGAGTGGCTGCAGTGGGTTTTGGCCTGCTGTGCGTCCTCCTGCTGGCTGCAGTCACAGTCCTCGCTACAAATAACACCCAGTTACAGATCAGTTACAACATCCCGAATGACAATTTTCAGACCAACTACAGCAACCTAGTAAAACTGATTGACCAATTACAGAAGGAGAATGCTGCACTTCAGAAGAAGCTGGCGGATCTAGCTAAACATGCCCAACTAGGATGGGTCTACTTCAGCTCCAGTCTTTACTTTATCTCGACGGAGAAGAAGAGCTGGACTGACAGCAGACAGGACTGCAGTAGGAAAGGAGCAGACCTCGTGATCATCAGCAGCAGAGAGGAACAGGAGTTCATCATTAAGCAGCTGGACGGAGATAAGGCTTGGATTGGTTTAAGTGACAGAAGCACAGAGAGGGTTTGGAAATGGGTGGATGGTACAGCGCTGACCACTGCGTACTGGGCTAAGGGAGAACCAAATGATGCAGGTAATGAAGAGGACTGTGCTGAGATTTggagttctgcagacagaaaggGCTGGAACGACGTGACCTGCTCTACAAAAGAGAGATGGATCTGTGAGAAACTGGATTTTCAGTGACTGTCAGCAGTCCAAAGTGTACCGAGACTCAAAATCTGCTCTTCAGCTCAGACACGAACGTCAACAACTTCAACGAGAGAAGCTTGTGAAATCCTGTATAAagcatgaatttaaaaaaaaaacgttttgaTCTTTTCCTTTCATCCCTCCATCGTGTTCAGTGTTTCTTTGTAATATAGTGATAGTGATCTGTCAATAAAGTATTGAGTCATTTGTAT
>XM_034309399.1
TCTGGAACCTGACGAAAATGGCTAAAAAAATggctcccaagtggtgcaacaaaaaaaaaagtgaaaatcatTGAGGCAAAATGGCATTTTGCTACAGAATCACTTCCACATGCACACTTTAGCCACTTTGCGTTTGTGCACAAACCCACACTGGAACTTCTCCATTCAGGGGAATACATGTGATATTCCCACATACAGAAACAGACTTAATGAGTGAGGTTTAAAACTGATGTAAATAAGTTTCATACATCCTTCCAGAACTGACAGGAATAACACAGTAACTGAAGAGATCAGGATGGAGATGAGATTTGACGAGGATACAAATTGGCCTCAGTTCTCAGAGCGACGGGAACAACAACTCAGGAGGAGGCACTACAAAGAGCCCTGTTACAGAGTGGCTGCAGTGGGTTTTGGCCTGCTGTGCGTCCTCCTGCTGGCTGCAGTCACAGTCCTCGCTACAAATAACACCCAGTTACAGATCAGTTACAACATCCCGAATGACAATTTTCAGACCAACTACAGCAACCTAGTAAAACTGATTGACCAATTACAGAAGGAGAATGCTGCACTTCAGAAGAAGCTGGCGGATCTAGCTAAACATGCCCAACTAGGATGGGTCTACTTCAGCTCCAGTCTTTACTTTATCTCGACGGAGAAGAAGAGCTGGACTGACAGCAGACAGGACTGCAGTAGGAAAGGAGCAGACCTCGTGATCATCAGCAGCAGAGAGGAACAGGAGTTCATCATTAAGCAGCTGGACGGAGATAAGGCTTGGATTGGTTTAAGTGACAGAAGCACAGAGAGGGTTTGGAAATGGGTGGATGGTACAGCGCTGACCACTGCGTACTGGGCTAAGGGAGAACCAAATGATGCAGGTAATGAAGAGGACTGTGCTGAGATTTggagttctgcagacagaaaggGCTGGAACGACGTGACCTGCTCTACAAAAGAGAGATGGATCTGTGAGAAACTGGATTTTCAGTGACTGTCAGCAGTCCAAAGTGTACCGAGACTCAAAATCTGCTCTTCAGCTCAGACACGAACGTCAACAACTTCAACGAGAGAAGCTTGTGAAATCCTGTATAAagcatgaatttaaaaaaaaaacgttttgaTCTTTTCCTTTCATCCCTCCATCGTGTTCAGTGTTTCTTTGTAATATAGTGATAGTGATCTGTCAATAAAGTATTGAGTCATTTGTAT

Function

GO: NA

KEGG:

id description
K10059 CLEC4E, MINCLE; C-type lectin domain family 4 member E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928118.2 False 1010 mRNA 0.46 5 1847621 1851194
XM_034309399.1 True 1206 mRNA 0.44 6 1846228 1851194

Neighbor

gene id symbol gene type direction distance location
LOC113535035 NA coding upstream 1479 1838763 ~ 1844749 (+)
LOC117598580 NA coding upstream 131731 1709949 ~ 1714497 (+)
klhl11 klhl11,LOC107674689,LOC107556757,LOC107551837 coding upstream 237331 1600541 ~ 1608897 (+)
aclyb LOC108431393,LOC103369716 coding upstream 243963 1579297 ~ 1602265 (+)
LOC117598650 NA coding upstream 280465 1564045 ~ 1565763 (+)
foxh1 LOC108273808 coding downstream 24460 1875654 ~ 1882978 (+)
stat5b LOC108273804,LOC108431398,LOC107716464,LOC107653267 coding downstream 54014 1905208 ~ 1919420 (+)
ghdc ghdc coding downstream 75205 1926399 ~ 1935741 (+)
LOC113535328 rab5c,LOC108274320,LOC103035226,LOC108431395 coding downstream 135326 1986520 ~ 1991390 (+)
drosha drosha,rnasen,LOC107556767 coding downstream 141223 1992417 ~ 2049358 (+)
G189245 NA non-coding upstream 69796 1775605 ~ 1776432 (+)
G189190 NA non-coding upstream 234008 1609826 ~ 1612220 (+)
G189170 NA non-coding upstream 299646 1545798 ~ 1546582 (+)
G188770 NA non-coding upstream 795608 1046500 ~ 1050620 (+)
G188761 NA non-coding upstream 870363 974797 ~ 975865 (+)
G189280 NA non-coding downstream 12008 1863202 ~ 1863652 (+)
G189293 NA non-coding downstream 36456 1887650 ~ 1887870 (+)
LOC117598584 NA non-coding downstream 72790 1923984 ~ 1925704 (+)
G189477 NA non-coding downstream 291958 2143152 ~ 2145756 (+)
G189555 NA non-coding downstream 443892 2295086 ~ 2295305 (+)
LOC117598477 NA other upstream 180415 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 872010 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1061237 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1623809 137521 ~ 222419 (+)
LOC117598558 NA other downstream 86493 1937687 ~ 1952224 (+)
pyyb NA other downstream 673862 2525056 ~ 2528820 (+)
G189864 NA other downstream 909499 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1118931 2970125 ~ 3021609 (+)
G190028 NA other downstream 1387250 3238444 ~ 3239216 (+)

Expression


Co-expression Network