get4 (get4,LOC104959995,LOC103374619)


Basic Information

Item Value
gene id get4
gene name get4,LOC104959995,LOC103374619
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 858068 ~ 867809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928142.2
ATGAGCGGATTGGGTGTCGGCAGCTACGGCAGCTCGAAAGGGTCATTTGGGTGCCAGTGAGCCCGTAGCGCGAAGGGAACAATGATGTCGGAGCAGGAGGCTGTGAAGAGGAACCGCGGAGGAGTGCAGCGTGTGGAGGGGAAACTCCGCGCCAGTGTGGAGAGAGGAGACTACTACGAAGCCCATCAAATGTACCGGACCTTATTCTTTAGGTATACATCTCAGTCCAAGCATGCAGAAGCCCGGGAGCTGATGTACAACGGAGCGGTGCTTTTCTTTAGTTATAACCAGcaaAACAGCGCCGCGGATCTGTCCATGCTGGTGCTGGAGGCTTTGGAGAAGTCCGAGGCCAAGGTGGAAGAGGACATACTGGAGCAACTGGTCAAGCTGTTCAGCATGATGGATCCGAACTCTCCCGAGAGGGTGGCTTTTGTCTCGCGGGCGCTGAAGTGGTCGACGGGCGGCTCGGGGAAGCTCGGACACCCCAAATTACACCAGCTGCTGGCTGTCACGCTGTGGAAAGAGCAAAACTACAGCGAGTCCCGCTACCACTTCCTGCACTCCTCAGACGGCGAGGGCTGCGCTCAGATGCTGGTCGAGTACTCGGCCGCCCGCGGCTTCCGCAGCGAAGTCGACATGTTCGTGGCTCAGGCCGTCTTACAGTTCCTCTGTCTAAAGAACAAAACGAGCGCCTCGGTGGTGTTCACCACGTACACACAGAAGCACCCGTCCATAGAGAAGGGCCCTCCGTTTGTGCAGCCGCTCCTCAACTTCCTCTGGTTCCTCCTGCTGGCGGTGGACGGAGGGAAGCTGACAGTCTTTACAGTATTATGTGAACAGTATCAGCCGTCGCTGAAGAGGGACCCCATGTACAACGAGTACCTGGACAGAATAGGACAGCTGTTCTTCGGCGTTCCACCCAAACAGTCCTCATCGTACGGTGGCCTGCTAGGGAATCTGCTGAACAGTCTGATGGGGTCgggtgaggaagaggagggtgAGGAAGTTCGTGAGGACAGCAGCCCCATCGAGCTGGACTGAACATCGCACACCTCCAAACGCAACCTCTCAGTTAGAGAAAACGACACAGAACTGAATCAaactcaagttttttttttttttcttttgttttgtttttttcttttgaccaCATGTCCTGGAAAATgtagctgcagtttttgttttattttttatttctttgctcCTCTGTGTAGTTTTCAGAAGAGGTGATTGATGCAGCTTCTGGATTACTACTACACCACCcacaccaccactaccaccaccaccaccaccacctctcAACGAGAATAAACTAACGAATCAATAAACTGCCGTAAAATGGAAGAACATCTGAAGCGTAATCATGACAGCCCGCTTTACGTTCAGCCAGAACCGAACAcatcgttgttgttgttgttgttgttgtttttttgttaatgaatAGTGATGCATCGATACTGAGACGGGTCTCAGGTTTCAGCCTGATACTGTTCTCATTTTACTGACAGCAGCTGATGCTGTGTGACGTGAGccgagtgtgtgtcagtgtcgcAGTGATGAACAGACGACAGGAAACGACAGCGATTAACGATCAAAGCAAACTGTGAAAATATTAACTACTGCATCTTCCTCCAATACGAGTGATGAAACATCGTTATAGCGTTtaaacggtgtgtgtgtgtgtgtgtgtgtgtgtgatagaggaCGGGTGTTCGAATGCCGTGAATCGCGCACGCATAAAGATATTCACGAGCTTAGAGCAGTGACGCAAATGTGCCGAGAAACTGTCACGTGAGAGAGCGAGCAGTtcagttcagcgagcactgagacacgcccCCTTCCGTTCGACACTTCGAGGTGCAGTTAAGCTAAATAAAGTGTTCCGCGACATCCGTGATTAATACTAAAGGCCTGGTTTGTACCCGACACGTGACTTTCACACGCTCGCCTGCGTACGTCACGTACTTTATCTAGAGAAGTAAACGCGATTAGAGCCAGAACGTCCCCGTGCATCAGGTTTCCAAGCTGAACTGTAAAACGTTTTTAACGCACTGCGACGTTAAACACACAGACGAGCGCCGTTTCTCTGTCGTCACGGGCTGCGTCTCGGCTCAAAAACTCTGACCttgctttcaaaaatatttgCTAATCTGGAAAATCGGGAATTCTGGTACGCATAACAGCTTTTGGTCACTCAGAATGAGAcagttttaaaattgtaatcgtcTGAAATAGTAAAGGAGTGacgtgatttgagacacaaggctagtttgtttattcagcTGCGTACACAGTGTCACGTGGCGCTGTACTGCCCCCACTGGACGTCTCGGTATTGCACCACACAGACGTGTAGCGGTGATTTCTGTCGTTTCGGGGACGTGGCGCAGGATACACGCGGCGGCCATCTTGTGTAGATAAAAGCAAGCGGAATCATTTCGGTATCAGGATCAGTACTAGTGAGTACCGgtaccaaaaaaaaactctgtctagaaaaaaaaagtcatcgatgcatccctaattaataatatttataagatTAAAGTCTAAGAATTCTATTCAGAGCTAACACACGCTGAGAATCCTCCTcgcagtagtgtgtgtgaagacgTCCCACCTTCCAGAGaggtgtttgctgtgtgtgtttttacattcTGAACAAACTTCACCACTACTCCTGTTattgcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgctcgcatgtgtgtgagatgtcTGAGTGGGATGTCGAGATTTATTTAAGTTTGTTGTCCATAATCTGAAGCAGATGCTTTGACTTTTTGCAAGagctcaataaataaaaaggacaGGGGCGAAA
>XM_026928143.2
AGTGATGAGCGGATTGGGTGTCGGCAGCTACGGCAGCTCGAAAGGGTCATTTGGGTGCCAGTGAGCCCGTAGCGCGAAGGGAACAATGATGTCGGAGCAGGAGGCTGTGAAGAGGAACCGCGGAGGAGTGCAGCGTGTGGAGGGGAAACTCCGCGCCAGTGTGGAGAGAGGAGACTACTACGAAGCCCATCAAATGTACCGGACCTTATTCTTTAGGTATACATCTCAGTCCAAGCATGCAGAAGCCCGGGAGCTGATGTACAACGGAGCGGTGCTTTTCTTTAGTTATAACCAGcaaAACAGCGCCGCGGATCTGTCCATGCTGGTGCTGGAGGCTTTGGAGAAGTCCGAGGCCAAGGTGGAAGAGGACATACTGGAGCAACTGGTCAAGCTGTTCAGCATGATGGATCCGAACTCTCCCGAGAGGGTGGCTTTTGTCTCGCGGGCGCTGAAGTGGTCGACGGGCGGCTCGGGGAAGCTCGGACACCCCAAATTACACCAGCTGCTGGCTGTCACGCTGTGGAAAGAGCAAAACTACAGCGAGTCCCGCTACCACTTCCTGCACTCCTCAGACGGCGAGGGCTGCGCTCAGATGCTGGTCGAGTACTCGGCCGCCCGCGGCTTCCGCAGCGAAGTCGACATGTTCGTGGCTCAGGCCGTCTTACAAGGGAAGCTGACAGTCTTTACAGTATTATGTGAACAGTATCAGCCGTCGCTGAAGAGGGACCCCATGTACAACGAGTACCTGGACAGAATAGGACAGCTGTTCTTCGGCGTTCCACCCAAACAGTCCTCATCGTACGGTGGCCTGCTAGGGAATCTGCTGAACAGTCTGATGGGGTCgggtgaggaagaggagggtgAGGAAGTTCGTGAGGACAGCAGCCCCATCGAGCTGGACTGAACATCGCACACCTCCAAACGCAACCTCTCAGTTAGAGAAAACGACACAGAACTGAATCAaactcaagttttttttttttttcttttgttttgtttttttcttttgaccaCATGTCCTGGAAAATgtagctgcagtttttgttttattttttatttctttgctcCTCTGTGTAGTTTTCAGAAGAGGTGATTGATGCAGCTTCTGGATTACTACTACACCACCcacaccaccactaccaccaccaccaccaccacctctcAACGAGAATAAACTAACGAATCAATAAACTGCCGTAAAATGGAAGAACATCTGAAGCGTAATCATGACAGCCCGCTTTACGTTCAGCCAGAACCGAACAcatcgttgttgttgttgttgttgttgtttttttgttaatgaatAGTGATGCATCGATACTGAGACGGGTCTCAGGTTTCAGCCTGATACTGTTCTCATTTTACTGACAGCAGCTGATGCTGTGTGACGTGAGccgagtgtgtgtcagtgtcgcAGTGATGAACAGACGACAGGAAACGACAGCGATTAACGATCAAAGCAAACTGTGAAAATATTAACTACTGCATCTTCCTCCAATACGAGTGATGAAACATCGTTATAGCGTTtaaacggtgtgtgtgtgtgtgtgtgtgtgtgtgatagaggaCGGGTGTTCGAATGCCGTGAATCGCGCACGCATAAAGATATTCACGAGCTTAGAGCAGTGACGCAAATGTGCCGAGAAACTGTCACGTGAGAGAGCGAGCAGTtcagttcagcgagcactgagacacgcccCCTTCCGTTCGACACTTCGAGGTGCAGTTAAGCTAAATAAAGTGTTCCGCGACATCCGTGATTAATACTAAAGGCCTGGTTTGTACCCGACACGTGACTTTCACACGCTCGCCTGCGTACGTCACGTACTTTATCTAGAGAAGTAAACGCGATTAGAGCCAGAACGTCCCCGTGCATCAGGTTTCCAAGCTGAACTGTAAAACGTTTTTAACGCACTGCGACGTTAAACACACAGACGAGCGCCGTTTCTCTGTCGTCACGGGCTGCGTCTCGGCTCAAAAACTCTGACCttgctttcaaaaatatttgCTAATCTGGAAAATCGGGAATTCTGGTACGCATAACAGCTTTTGGTCACTCAGAATGAGAcagttttaaaattgtaatcgtcTGAAATAGTAAAGGAGTGacgtgatttgagacacaaggctagtttgtttattcagcTGCGTACACAGTGTCACGTGGCGCTGTACTGCCCCCACTGGACGTCTCGGTATTGCACCACACAGACGTGTAGCGGTGATTTCTGTCGTTTCGGGGACGTGGCGCAGGATACACGCGGCGGCCATCTTGTGTAGATAAAAGCAAGCGGAATCATTTCGGTATCAGGATCAGTACTAGTGAGTACCGgtaccaaaaaaaaactctgtctagaaaaaaaaagtcatcgatgcatccctaattaataatatttataagatTAAAGTCTAAGAATTCTATTCAGAGCTAACACACGCTGAGAATCCTCCTcgcagtagtgtgtgtgaagacgTCCCACCTTCCAGAGaggtgtttgctgtgtgtgtttttacattcTGAACAAACTTCACCACTACTCCTGTTattgcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgctcgcatgtgtgtgagatgtcTGAGTGGGATGTCGAGATTTATTTAAGTTTGTTGTCCATAATCTGAAGCAGATGCTTTGACTTTTTGCAAGagctcaataaataaaaaggacaGGGGCGAAA

Function

symbol description
get4 Predicted to be involved in protein insertion into ER membrane. Predicted to be part of BAT3 complex. Predicted to be active in cytosol. Orthologous to human GET4 (guided entry of tail-anchored proteins factor 4).

NR:

description
Golgi to ER traffic protein 4 homolog

GO: NA

KEGG:

id description
K23387 GET4; golgi to ER traffic protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928142.2 True 2844 mRNA 0.49 9 858072 867809
XM_026928143.2 False 2707 mRNA 0.49 8 858068 867809

Neighbor

gene id symbol gene type direction distance location
zgc:174164 NA coding upstream 1985 836051 ~ 856083 (+)
htra1b htra1,LOC107660481 coding upstream 34086 794438 ~ 823982 (+)
btbd16 btbd16 coding upstream 105028 721051 ~ 753040 (+)
LOC117598554 NA coding upstream 582622 274381 ~ 275446 (+)
si:ch211-207i20.2 LOC108274000 coding upstream 706614 139859 ~ 151454 (+)
LOC113535268 NA coding downstream 21367 889176 ~ 920532 (+)
LOC113535123 NA coding downstream 108714 976523 ~ 996803 (+)
dbf4b NA coding downstream 130978 998787 ~ 1009835 (+)
adam11 LOC108431418 coding downstream 146120 1013929 ~ 1046212 (+)
fkbp10b fkbp10,LOC108273773 coding downstream 187982 1055791 ~ 1065735 (+)
G188730 NA non-coding upstream 23499 834103 ~ 834569 (+)
G188715 NA non-coding upstream 116316 740426 ~ 741752 (+)
G188694 NA non-coding upstream 163599 692959 ~ 694469 (+)
G188681 NA non-coding upstream 223085 634400 ~ 634983 (+)
G188605 NA non-coding upstream 346092 509030 ~ 511976 (+)
G188744 NA non-coding downstream 37657 905466 ~ 913373 (+)
G188747 NA non-coding downstream 54796 922605 ~ 922805 (+)
G188749 NA non-coding downstream 56476 924285 ~ 924490 (+)
G188761 NA non-coding downstream 106988 974797 ~ 975865 (+)
G188770 NA non-coding downstream 178691 1046500 ~ 1050620 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 73077 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 635649 137521 ~ 222419 (+)
LOC113535146 LOC108261429 other downstream 89723 957532 ~ 974218 (+)
LOC117598477 NA other downstream 699707 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1069878 1937687 ~ 1952224 (+)
pyyb NA other downstream 1657247 2525056 ~ 2528820 (+)
G189864 NA other downstream 1892884 2760693 ~ 2761010 (+)

Expression


Co-expression Network