htra1b (htra1,LOC107660481)


Basic Information

Item Value
gene id htra1b
gene name htra1,LOC107660481
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 794438 ~ 823982 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928163.2
AGCTGAGAGAACCGTGAGCAGCTCTGTgactctctctccttctctcactctccctctctctctgtgagtctctgaagaaaaaggaaaacgAGGATGCGTGCTCAGTTCGTGGCGTGCGCGTGCGTCCTGTTCCTGCTCTGCGCGCCGGCGTCGTGGGGCGCGCGCGTTCCCGGCTGCCCCGATCGCTGCGACAAGTCGGCGTGTCCGCCGATTCCCGCCGACTGCCTGGCCGGGGACGCGCTCGACCGCTGCGACTGCTGCCCCGTGTGCGCGTCGGGCGAGGGCGAGCAGTGCAACACCCAGAGCGACTGCGCCGAGGGCCTGCGCTGCTCCGTTACCGACGGCGTGGCCTACAGCGCCACCGTGCGAAGGCGCGCGAAGACAGGCGTGTGCACGTGCGAGAGCGCCGAGCCGGTGTGCGGCAGCGATGGAGTGACGTACCGCAACGGGTGCGAGCTGCGCAGGGCGAGCGGGAGCGCGCAGCGTCAGAACCAACCGCCGGTCATCGTCGTGCAGAGGGGCGCGTGCGGCAAAGGTCATGACGGGAATCCTGACAGCCTGCGCCACAGATACAACTTCATCGCCGACGTGGTGGAGAAAATCGCACCTGCTGTGGTCCATATTGAGCTCTACCGCAAGATGGTGTTCACTAAGCGGGAGATGGCAGTGGCTAGCGGCTCGGGCTTCATCGTATCCGAAGACGGTCTGATCGTCACTAACGCTCACGTAGTGGCCAACAAACACCGAGTCAAAGTGGAGCTAAAGTCAGGAGCCACGTATGACGCTAAAATCAAAGACGTGGACGAGAAAGCCGACATCGCTCTCATCAAGATCGACACTCCTGTGAAGCTCCCAGTGCTGCTGCTGGGCAGCTCAGCTGATCTGAGGCCCGGCGAGTTTGTGGTCGCCATCGGCAGCCCCTTCTCCCTCCAGAACACTGTGACGACGGGAATCGTTAGCACCACTCAGCGCGGCGGCAAGGAGCTTGGTCTCCGCAACTCAGACATGGACTACATCCAGACCGATGCCATCATCAATtATGGAAATTCAGGAGGACCTTTGGTGAACCTGgaTGGAGAGGTCATAGGGATTAATACTCTGAAGGTGACTGCTGGGATCTCCTTCGCCATTCCCTCTGACAAGATCCGCCAGTTCCTTACTGAGTCTCATGATCGACAGGCCAAAGgaaaaaacaccacaaaaaagAAGTATATCGGCGTGAGAATGATGAGCCTCACCCCAACTCTTGCTAAGGAGTTGAAAGGAAGGATAACCGATTTCCCGGACGTCACCTCTGGCGCGTACGTCATCGAGGTCATTCCCAAAACTCCAGCAGAAACCGGAGGTCTGCTGGAAAATGACGTCATCATCAGCATTAACGGCGAGCAAATCGCGTCAGCCAGCGACGTCAGCGCCGCCATCAAAAAAGACAACTCGCTCCGCATGGTGGTTCGGCGAGGAAACGAGGACGTCATCCTCACCATCGTGCCTGAGGAGATTGACCCTTGACCTCtcgtcacgtcacgtcacgtcgCGACCCCCTGCTCTACTTTGAGCTGGTTCTTAGCTATAAAACGAAAGAACACAGACATTTCACGGAGCATGGTGTATCTGGAGCcgtgttcattttgttttagtcattttttaaaatcttttgtcTTAGTAAATCCCACAATATTTAAACTTTTGAGATCAGTACGCTGAAATGTTTACTCTTGTTTTTGTGTCTTGCTTCAAAACCGTCAAATCTGCAGTCTGCCATTACTCAGTTaggattattaaaaaaaatcatgtatcaGATTCTGTTTTTAAAGTGAGGAACTCTTGgctgtgtattatttttatgtacatCAGCGAAATTgttgcatttattaattatttttgtgtttatactCATATATTACACTTCACATGAGAGAATAATAACAGGATCGTGCTGGAGAAACGGAGTCTTATATCACACTTATATCACAAAATTTAAAGCTGCTTCATTCCtgaatatttgaacattttatgaatTAACAGATTTAACACGGGGAGCGTCTCCGATTAAAACTAGCATGAACTGTCGGTGGAGTTTGGTGGAGATCCATCAGAAATGTACATTAGCAATGCTATTGATTGAATATTCCTGTTAATTCAGGCTTTATAAGCAGAATTATTGACTGATACATCAGGTTGTTAATGTATGTATGAACATGTACAGAACAACAGAGTTGATCTCGCAGCACACTAACaggaaacattaaaaataaaactttctttTATTTGGTA

Function

symbol description
htra1 Enables identical protein binding activity. Predicted to be involved in proteolysis. Predicted to act upstream of or within chorionic trophoblast cell differentiation; negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway; and placenta development. Located in plasma membrane. Colocalizes with collagen-containing extracellular matrix. Implicated in CADASIL (multiple); hypertension; and macular degeneration (multiple).

NR:

description
serine protease HTRA1 isoform X2

GO: NA

KEGG:

id description
K08784 HTRA1, PRSS11; HtrA serine peptidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928163.2 True 2274 mRNA 0.51 9 794438 823982

Neighbor

gene id symbol gene type direction distance location
btbd16 btbd16 coding upstream 41398 721051 ~ 753040 (+)
LOC117598554 NA coding upstream 518992 274381 ~ 275446 (+)
si:ch211-207i20.2 LOC108274000 coding upstream 642984 139859 ~ 151454 (+)
LOC113535195 LOC108273631 coding upstream 657650 134237 ~ 136788 (+)
LOC113535310 NA coding upstream 668599 121267 ~ 125839 (+)
zgc:174164 NA coding downstream 12069 836051 ~ 856083 (+)
get4 get4,LOC104959995,LOC103374619 coding downstream 34086 858068 ~ 867809 (+)
LOC113535268 NA coding downstream 65194 889176 ~ 920532 (+)
LOC113535123 NA coding downstream 152541 976523 ~ 996803 (+)
dbf4b NA coding downstream 174805 998787 ~ 1009835 (+)
G188715 NA non-coding upstream 52686 740426 ~ 741752 (+)
G188694 NA non-coding upstream 99969 692959 ~ 694469 (+)
G188681 NA non-coding upstream 159455 634400 ~ 634983 (+)
G188605 NA non-coding upstream 282462 509030 ~ 511976 (+)
LOC113535322 NA non-coding upstream 539690 243923 ~ 254748 (+)
G188730 NA non-coding downstream 10121 834103 ~ 834569 (+)
G188744 NA non-coding downstream 81484 905466 ~ 913373 (+)
G188747 NA non-coding downstream 98623 922605 ~ 922805 (+)
G188749 NA non-coding downstream 100303 924285 ~ 924490 (+)
G188761 NA non-coding downstream 150815 974797 ~ 975865 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 9447 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 572019 137521 ~ 222419 (+)
LOC113535146 LOC108261429 other downstream 133550 957532 ~ 974218 (+)
LOC117598477 NA other downstream 743534 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1113705 1937687 ~ 1952224 (+)
pyyb NA other downstream 1701074 2525056 ~ 2528820 (+)
G189864 NA other downstream 1936711 2760693 ~ 2761010 (+)

Expression


Co-expression Network