LOC113535098 (LOC108273774)


Basic Information

Item Value
gene id LOC113535098
gene name LOC108273774
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1065924 ~ 1073226 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928249.2
TCAGGCGAAATTCACAACTACCTAAAGGGTCCTTCGAATCCGGATTTGCTCGCTTCATTTACACACCACCTTCGTTATTAAATTCTTAACTCGTTTGTTTTCGTGGGAGGGGGAAACAGTGATTTTCATCTTTACAAACGCTCTAAACATCCTGTTGAAAATGgtttttaACGTCCCCTGGATCTTTTCTCCTGTTCGAAGCGTCCTAACAGTCTTCCATCAGCTGATAAAGTGCGAGattcCGGAGCTGAACAAAGCgtcggtgtgtgtgagagacagaggacGAGTGGAaaccatcatcaacaacatgCGGAGAGCAGGACCTAATGcactgcaggtgatCTCTGACTTCGACATGACACTCACCAGATTTGCTCACAATGGGAACCGCTGCCCTACCACACacaatattCTTCACAGCAGCGCTCTCATTAGCGACGACTGTAAAGCAAAGATGACGGATTTGTTGGCTCATTATTACCCTATTGAGATCGACAACTCGATGTCGGTGGAGGAGAAAGTTCCTCACATGGTGGAATGgtggacGCAAGCTCACGATTTGCTCGTCCAACAGCGAATCAGGAAAGACCAGCTGGCTCAGGCTGTGAGAGACTCGGGCTCCATGTTGAGagagggGTACAAGTCTTTCTTTGACGTGCTGCAGCAGAACTCGGTCCCTCTGCTGATCTTCTCAGCCGGAATTGGAGATATTTTAGAGGAAGTGATCAGAGAGCACGGCGTCTTCCACCCGAACGTGCGCATCTTCTCCAACTACATGGACTACGACCAACACggtgttgCGTGTGCATTTAAGGGCGAGCTGATCCACACGTTTAATAAAAGAGAGGGAGCTCTACAGAACACACACCAGTTCGTTCACGATCGCACCAACGTGCTGCTGCTGGGAGATTCGCTGGGAGACCTGAACATGGCCGACGGCGTGAAGGACCTCCACGACATCCTGCGCATCGGCTACCTCAACGACAAGgttGAGGAGAGGAGGGAGGCGTACGTCAGCTCTTATGACATCGTGCTGGAGAAGGATGAGACGCTGGACGTCCCAAACGCAATTCTTAACTACATCACAGCGGGGAAATGAGGCCTCGTGACTGTCAGAAAGGGAAACTAGCATCCCAGCCACCAGCCAATCAGGATTAAGcgagggtcaaaggtcagtggGATAAACAGACTGATCGTCACATGTCAAGAACTCATTCATCTGATTTCTGTCAGTGTAGATCACTGGCTtcatcattttcacattttatcttCACGCACAAATtcttatgtttaaaatatactcctttttgtattttttttttttaattatttatcaaaaCATCTCATCTGTaataatttgtcttttttttctcagatttcaattatttttttataagatTTTATCAATGGGTCAATTTCTCTCATTCTGAGAGATTTTAATATCTAaacattttagatattttagcTCATGCATTAAACGTCCCTCTCTGGTCTTACTGTATAATGTACAGAATATAAAAATCCTTCACAGCCTCTTCAGTGTCGCTCCAGTTTGATGTTTTAGTTTGATgtttttctactgtttttttattcttattctttttaaaagaattaaaatactGTCCAAACACACAGACGTGGACAAATTTATAGGTACCCTTACAGTTCTTAGTGATTAAACCAAAAGCAGTAGTCTCATATATACCTGCCTGCccaataaaccaataaaattgtgaagagaaatgactcattgtttattttagcaagataatctaaaacagcctggACAGATTTCTTGGTTCCCCtaaaaaaagattagaaatcATTGCATTCTAATCATATTTCAAACTAATTGTTTAACCTTAATTAGTGTCACAGGTGTCTTCAATCTGTgtaacagccaatcagcctatTTAAAAAGCCACTGTGTAGGTTGGTATCATAGTGTGCTCCACactgaacatggaccagagaaagcaagaccatctccaagcagTTTGATGGTCCTGTGGAGGTTGGCTACAAACGGACTATAGCCAACCTCCCAGGACGTGGCCGCAAGAAGAAATGCAACCCCAGGTTGATCAGAAGGATTGAGCGGATggtagacaaagagccaaggaaaaGCCATTCAAGCTGAACTCCAAGGTCAAGGTACGTCACTATCTGATCACACCATCCAtcgcattttaaacaacaacgGGCTCCATGGAAGAAGACCCACGAGAACACCATTattgaaagaaatttaaaaaaaaaaaaaaaaaaaaatccagactggAATTTGCTAAAATGCATGTTGACAAGCCACAAAGTttctgggagaatgtccttTGGAGTGATGAAACAAAACtagagctttttggcaagtcacaCCAGCTGTATGTTCACAGGCAGAAAGatgaagctttcaaagaaaagagcACCATACTATACTGTGACACATGGAGGGGGCTCAGTCatgttttggggctgctttgctgcgTCTGGCACAGAGGGTCTCgaatctgtgcagggcacaatgaaggCTCAAGGAGAGAAAcatactgcccagtgtcagaaagctctccCTCAGTCGCAGGTCAGGGGTCCTCCAacaggataatgacccaaaacacacggcAAAAACACTCAAGAATGGCTGGGGGAAAACATTGGACTATTCTTAAATGGCCCTCTGAGTCCTGATCTTAATCCTattgaacatctgtggaaagatctgaaaaatgcagtgtgcagAAAGCACCTTCAAACCTCAGACAGGTAGAGCAGTTTGTTCAGGAAGAGTGGGCCAGAATACTCGTTACCCGATGCAGAAGTCTCCTCGTAAACTTGTTGGTAGTGATTGCTGCTAAAGGTGGTGCAACAAGTTAAGGGCACCATCTTTTTTTGTCCgtgtcattttcatttggttcattatgtaaaatattcagtttaatcGAAAATCAACAAGCATTACTTTTAAAAGTTAAACATGGAATTAACAGTAACTGATACCATTAACATTTGTCAGTTTCAAATTATTTCAGAGATAGTTGTGGGTCCTTCTATTTCatggaagggtaccaacaaacTTTTGTCCACGTCCGTACACTTTTTTTCACACATAAacttaaagacaaaaataattaaattgacattttgtaaaatgtttacattgcTGTTTTACTGAATGTTGAATGTTAAAACAGTAACTGCCTGAATATTTTGTGCACAAAAACAAGAATTctgttaattatttcttttatatattttaaatgaggttttttttacatttattttgtctgttttgcgTCTGAAAAATCAGACGACTGTGAGTGTAAACGATGTGACAGTTTTCTTGttttccatctctctgttcTTGTACTGTAGAAATGttataattcagtaaataaaattaattaactcTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928249.2 True 3410 mRNA 0.41 11 1065924 1073226

Neighbor

gene id symbol gene type direction distance location
LOC113535162 NA coding downstream 110083 944848 ~ 955841 (-)
LOC113535267 rnd2,LOC108273785,LOC103364924,LOC102195949 coding downstream 122597 926188 ~ 943327 (-)
becn1 becn1,atg6 coding downstream 176975 882694 ~ 888949 (-)
vps35l c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62 coding downstream 186797 868037 ~ 879127 (-)
waplb wapl,LOC108435041 coding downstream 346991 692948 ~ 718933 (-)
LOC113535205 NA coding upstream 540770 1613996 ~ 1619414 (-)
LOC117598490 NA coding upstream 549454 1622680 ~ 1650547 (-)
LOC113535291 LOC108273550 coding upstream 703578 1776804 ~ 1804114 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding upstream 739341 1812567 ~ 1822814 (-)
oplah oplah coding upstream 815590 1888816 ~ 1903996 (-)
G189056 NA non-coding downstream 18140 1046109 ~ 1047784 (-)
G189090 NA non-coding downstream 24811 1040741 ~ 1041113 (-)
G189077 NA non-coding downstream 37271 1013917 ~ 1028653 (-)
G189050 NA non-coding downstream 139868 925824 ~ 926056 (-)
G189035 NA non-coding downstream 185687 879745 ~ 880237 (-)
G189145 NA non-coding upstream 231940 1305166 ~ 1370050 (-)
G189149 NA non-coding upstream 317137 1390363 ~ 1391921 (-)
G189161 NA non-coding upstream 380678 1453904 ~ 1533954 (-)
G189174 NA non-coding upstream 474470 1547696 ~ 1548722 (-)
G189200 NA non-coding upstream 496882 1570108 ~ 1602249 (-)
c12h10orf88 c13h10orf88 other downstream 231164 748738 ~ 834760 (-)
LOC117598518 NA other downstream 427882 636497 ~ 638042 (-)
G189180 NA other upstream 491664 1564890 ~ 1565260 (-)
G189199 NA other upstream 495060 1568286 ~ 1571073 (-)
LOC113534879 NA other upstream 687608 1760834 ~ 1773520 (-)
ppp1r16a ppp1r16a other upstream 751809 1825035 ~ 1869993 (-)
LOC113547489 NA other upstream 1121118 2194344 ~ 2210979 (-)

Expression


Co-expression Network