kcnh4b (LOC108273803,LOC103352817)


Basic Information

Item Value
gene id kcnh4b
gene name LOC108273803,LOC103352817
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1941696 ~ 1982877 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928444.2
gagagagagagagagagtagcaGAGGGAAGTGgagcagtgaggcagtgaggtgTAAAGACGCACACAGAGACACCACACCTCGAGCGGATAAACGACAGAGCGAACGGTGCAGAGAAAGAGgacaaggacaaaaaaaacgAGGGAAACTGATAAAGGACACAAAGGAGGACAGAAGGATGGATTGAAGATCGGAGTAATTCTGAGAACTCACTCTATTTCTCCAGGAAGAAAggggagaggaggaagagagaacgAGAGGAAGAAACAGTTCGAACAGAAACGAGGGGAATCCCTCCTTTATTTTTTACCCCATGGGGTAGTTCAGTCCAATCCGGTGCCCTCGACTCAGAGGATGGAGTGAGGAGCGAAAAGGggggaaagacagacagacggacagacagacagacagagagacaccgagagactgagacacactgacaggaagacagacaggTCGTGTGTCTCCACCATGCCGGTGATGAAGGGGCTCCTCGCCCCACAAAACACTTTCCTGGACACCATCGCCACTCGCTTCGACGGCACCcacagcaACTTTCTGTTGGGGAACGCTCAGGGTCACCGTGGTTACCCCATTGTTTACTGCTCGGATGGGTTCTGCGAGCTGACGGGCTTCGCCAGGACAGAAGTAATGCAGAAGAACTGCAGCTGTCGCTTCCTGTACGGCTCCGGGACGAGCGAGCAGGTGGCCCAGGGCATGGAGAAAGCGCTGGAGAGTAAAGAGGAGTACCAGGCCGAGGTTCAGTTCTACAAGAAAGACGGAACGTCGTTCTGGTGTCTGCTGGATATCGTTCCCATAAAGAACGAGAAAGGAGAGATGgtgcttttccttttctcctttaAAGACGTGACGGACTCGCACGGAAAGAGCCACCACGGCAACAGGAGAGATGATGATAAGCATCAGAGCAGGAAGAGCAGCAGCTCTCGGATCATTGCCGCTCGGAGGCGTGGCCACTCCGTCCTCTGCCAAATCACCAGCCAGTTCAAACGTGGAGGAAAGAACGATGTCAACCTCAGCGGCAACATGTTCGAGAAACCGTCGTTGCCTGAGTACAAGGTTGCGGCGGTGCAGAAATCCCGCTTCATCCTTCTCCACTACAGCGTGAGCAAAGCATTGTGGGATTGGATGATCCTCCTGGCGACGTTCTATGTGGCTGTGACGGTGCCGTATAACGTGTGTTTCACGCCGTACGTCGATTCGGACACGGAGGCCAGGAGCACCATCGTCTCAGACATCGCTGTGGAGATGCTCTTCATCCTCGATATCATCCTGAACTTCCGCACCACCTACGTGAGCCAGTCTGGTCAGGTGGTTTACGATTCGCGCTCTATCTGCATCCATTATGCTGCTACGTGGTTCTTTGTGGATTTGGTGGCCGCGTTGCCCTTTGACCTCCTTTACGCCTTCAACATCACTGTCacgtCTCTggttcacttgctgaagacggTACGTCTGCTGCGACTGCTGCGTTTGCTTCAGAAGCTGGATCGTTACTCTCAGTACAGCGCCATGGTGCTCACACTCCTCATGTCCATGTTCGCTCTGCTCGCTCACTGGATGGCCTGCATCTGGTACGTCATTGGACGGAAGGAGATGGAGCGCAACGCTAACCAGCAAGACTGGGACATcgGTTGGCTGCACGAGCTCGGAAAGCGCTTGGAGAGCCCGTACGTGAACAGTACGTCTGGAGGTCCGACTCTACGTAGCGCCTACATCGCGTCGCTGTACTTCACCCTCAGCAGCCTCACCAGCGTCGGATTCGGAAACGTCTGCGCTAACACGGACGCTGAGAAAATCTTCTCCATCTGCACCATGCTGATCGGAGCTCTCATGCACGCGGTGGTGTTCGGAAACGTGACGGCCATCATCCAGCGCATGTATTCCCGCCGCTCGCTGTATCACACGCGCATGAAGGATCTGAAGGACTTCATACGCGTCCATCGGCTGCCGCAGCAGCTGAAGCAGCGCATGCTCGAGTATTTCCAGACCACGTGGTCCGTTAACAACGGCATCGACGCTAACGAGCTCCTGCACGATTTCCCGGACGAGCTCCGGGCCGACATCGCCATGCACCTGAACAAGGACATCCTGCAGCTTCCTGTGTTCAAGGGCGCGAGTCGCGGCTGCCTGCGGTCCTTATCGCTGCACATTAAAACCTCGTTCTGCGCGCCGGGCGAGTATCTGATCCGGCAGGGAGACGCGCTCCACGCTAACTACTTCGTCTGCTCCGGCTCCCTGGAGGTGCTCAAGGACAGCATGGTGCTCGCGATACTGGGAAAGGGCGACCTGATTGGCTCAGACCTGCCAGGACAGGATCACGTGATTAAGACAAACGCGGACGTGAAGGCGCTGACGTATTGCGATCTGCAGTACATTAGCGTTAAAGCGTTGAGGGAGGTGCTGGAGCTTTACCCCGAATACGCCAGCGTGTTCACTGCCGACATCCACCACAACCTCACCTACAACCTGAGAGAGGGCAGTGAGGCtgagGGTCTTGCGAGGTTCTCACGTTCTCCAAGGTTCCTTCACAACAATCGAATGGACTCAAGAGCATCAACAGACGGAAAGCATCCCTGCATGATCGAAACCGGCGGAGAACCGGATGAACACTGTCACCTTTCTCCAGCGTCGAGATCCCGCCGGAACCTTCTCCTCCCGAACCTGGGGAACCTGCTGGGTGACGAGCTGCGGCAGTTTAACGCTCTACGCCGCTGCCGTTCCCCGGTGAGAGGAACCTGTAGAAGCATGTCTCCAAAACCACACCCCAAATCCGACCATCCTTCACATGACGCACCCTCCACGACTCAGGAGGGATTCGCCGCACGGAAACCCAACAAACTCCTCATTCCTACACTCAGCTGCTTCGCACCGCCTGACCTCAGCCCGAGGGTGGTTGATGGAATTGAAGATAATGGACGTGTGTTTCACTTCAGCACCGAGCACAGCAGGACCAGCACTAGTACAGCAAAAGACAACGATCAGGTGAACAGCACATTGCTCCAGGAGACGGAGGAGGTGCGAGAGAGCATCAGTCAACTCAACAAAAAgATGGTCAGCCTAAACCAGGAAGTGTCTCAGCTAACGAAGGACCTGCATCACATGATGCACCTTCTACAAGCACAAGCAGCAGTTCATCACTACCCCACCTCCATGTCCTCCTACCCCTACGGAGTGCACATGATGCACGCAAACACTGCGGCATACACCACCGGCGTGCACTCTCATCAGGAAGCTCAAGGCCTTTATCATCCACACCATCATCTTCAGGCTGAGAAGATCGTCCAGATCGGGGCAAGTGCATGGAGCCACACGTCAGAAATAGGTGGAGGTCGGACAGGTGCGCCCGCACAACCCGAAGTTTTCAGACACCTTCCTCATCTTGATCCTAACAGCACCTGTGATCCTGCTTCCTGTAAATCAagcttaattaacattaacacctcCACTTCCTCCTTCTATCCAGCAAAAGGATACAAGAAACAGGAAGCGGCAGGTCAGGATCACGGCAGCCTCGCTAACATCAGTCGCTCTCAGCCTGTTCTGTTCAACCGGGACAAACCAAACCAAGTCTCTTTAAATCTTCATTTACTTTCCAGCGCTCCAACATCCACTCACTCCCTGCTAATCGCTAATCGCACAAATCCGATCCACCACAATCCTCCGGCCACTAGCGAACCAAATCTGGAATTGGATAGTGACATTCCAGACGCAGTCCTGGAAGAGGTCAGTGAGGACCGGGAAGACGCTGTCCTGCTGTCAGATTTGAGCAAAGTGGGACACACAAGTCGCGAGTGCCTGCTAGCAGACGACGGATCTGCGGAAAACCAGGACATCGAGacttcagaatcagaatcaacgAAGCCTGATGTTGGGACTCAAAATGAAAGCAGCGGCTCTGAAACTTCCTGGTGCCTCGACCTGATGGACTAATCCAAGACTCTAAAGAAAGTATATCCAAAATGTTTgcagtgatctttttttttttgacaagggATTGTCTTTTCCGTCCCGCCCgtgcaaataatttaataactatGCAAGACGCATGTTGATTGTGCATTATTCCTTATTTACTCAAAAAATACTCAGTATACCACACGAATAGCTTGCCTTTGAAATTACGCACAGTCGGGTCCAAAAGTCGGAGTCCACAGGTTCTTGTCTGAGAAGAATTATTAGTACTCTGTACATTTCACATTATCGTTCTAAATGTTTCCAGCCAATAAGAAGACACTGTACTGGTTGTAcgtgtggcagtctgggaaaacccatcagatgtcgCTGCGATGGAATCCTGCACATATTCAATAATCTACTTTGGTGTCGGTAGTTTAAGAAACCTCGAGTATATTTCGGCAAAATGTTATTATTCAGATTTTCTAACATTTCCTTGGCATCTTCTTGTAAAGctcatgttgtgtaaggagccaggagaaaaaaaatccatctgcctaaagatgtctaaaaccttgctagaaacgtgatcaagttgttggatagttCCATAGCCTCAGCGACATGTTAGCAATCAGATCAGATATCAGATGTTAAATTGTCCGCtcatatcatcatcaaaacaaagaagagcaCTTACAAACCCTGTAGAGATGACAGAGTTTTAAAACTATCTTTAAAATGACCGAATACAATGACAagaaatgtagctaacaagGCAATCAGAGATTATTTCCCCACCGATGTTAGCGTGAACCGAgctcagtggagtgaagagacgacgatgaggctcgtgtttaaacACCGTAAGTGAttttttacctcaggtgatgagattCTGACTGATGACTGATGACTGatgtgagaactcatttcccgTTAAACTTAACAGGAAGTTGAGTAAATTTTGATGTTTAGAGggatttaaaatgctagaactttccTTCTAGTTcagcacagaaaaacatttttctttaaaaaaaaaaaacaacttttcagAACTATAGAAAGTAAAAGATTTCCAAACTGAAGGGTTTTCCCGGACCGCCACATATTTTAGTGAAGGATGATGAGGAGTGTTAACAGGAGGCAGACTTTTGGACTCGATTGTGTTTGCCGTGGTGAACTATCAGGGTGTTTATCAAACCTTTTTTTGggcatttgaataaataaagtggatTGCCGACGTAAACAATCCGCCGTGTAGCATTTTGACGGTAGCATTCGCTCGAGTTATTCCAGACTAGACGCATCATACTAGATGCATCCTAAActtctctatatattttattctggTAGAATCTATGTTCTGTATTTCTTCTTACCTTCGTGCATGGTAAAGTTTATCGTTCTTTTTTCCTAAGGAAAAGGTATCAAGTGAAATGTGTTCACATTATGAATGTTTGAAGGGAAGGACTTCGCGAAATTTAGCACGTGCACTGTTAGACTGCTTTTCTTAAAACGAATCATTTCTGAGAatttcagtacacacacacacacacacacacacacacacaaaaaaaaa

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily H member 4-like isoform X2

GO: NA

KEGG:

id description
K04907 KCNH4, KV12.3; potassium voltage-gated channel Eag-related subfamily H member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928444.2 True 5502 mRNA 0.50 17 1941696 1982877

Neighbor

gene id symbol gene type direction distance location
oplah oplah coding downstream 37700 1888816 ~ 1903996 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding downstream 118882 1812567 ~ 1822814 (-)
LOC113535291 LOC108273550 coding downstream 137582 1776804 ~ 1804114 (-)
LOC117598490 NA coding downstream 291149 1622680 ~ 1650547 (-)
LOC113535205 NA coding downstream 322282 1613996 ~ 1619414 (-)
LOC113535332 LOC108274177 coding upstream 69907 2052784 ~ 2078967 (-)
buc2l LOC108273451 coding upstream 136325 2119202 ~ 2123272 (-)
LOC113534974 LOC108273474 coding upstream 141858 2124735 ~ 2132242 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding upstream 183549 2166426 ~ 2171691 (-)
emc9 emc9 coding upstream 232524 2215401 ~ 2224300 (-)
G189388 NA non-coding downstream 15995 1924026 ~ 1925701 (-)
G189386 NA non-coding downstream 18329 1919470 ~ 1923367 (-)
G189385 NA non-coding downstream 35261 1904862 ~ 1906435 (-)
G189381 NA non-coding downstream 53826 1887584 ~ 1887870 (-)
G189354 NA non-coding downstream 116748 1824282 ~ 1824948 (-)
G189411 NA non-coding upstream 4458 1987335 ~ 1988231 (-)
G189412 NA non-coding upstream 6642 1989519 ~ 1990155 (-)
G189451 NA non-coding upstream 65953 2048830 ~ 2061265 (-)
G189512 NA non-coding upstream 163835 2146712 ~ 2146915 (-)
G189521 NA non-coding upstream 177753 2160630 ~ 2162571 (-)
ppp1r16a ppp1r16a other downstream 71703 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 168176 1760834 ~ 1773520 (-)
G189199 NA other downstream 370623 1568286 ~ 1571073 (-)
G189180 NA other downstream 376436 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 1106936 748738 ~ 834760 (-)
LOC113547489 NA other upstream 211467 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 608360 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 803204 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 810169 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 869178 2852055 ~ 2855493 (-)

Expression


Co-expression Network