foxh1 (LOC108273808)


Basic Information

Item Value
gene id foxh1
gene name LOC108273808
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1875654 ~ 1882978 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928452.2
GCTGCAGGTGGTGGTGTGGAgcctcatcacacacacacacacacacacacacacacttcattagaATTTCCCAGAGTTTCTGCTTCTCAGAGGAAAAGGATTTTGagctttaaacaaaaacaaggagCTTGTGCTGAAGGGAAAGACTTTCACTGAAACacagACAGCGAGGACGTGGAGCCCTTtactttcctcctcctcctcctccatcatcttcatcagcaTGACAAAGCTCCGGGGGGGAGCGGAGTGGCGCGGCGCGCTCAGCCCGCACAGGGAGTCCGGAGTCCGGCTACAGATCTCAACCACGCCGCGGTGCAGCGGGACCTCCGAGGAAACTTTGCGCCCGAACTCCGGGGCCATGGACGGGGTTTTGGCGCAACACAGCGGGGCTATGGGGAGTGTGTTACCACAGCTAACCGGCCCCGAAGAGAAACCTGTACCCGGATTGATGGACGAGTCTCGGGCCGGGACTCACGGTGCCTCCCGACTCCCCGCGGATCAGCACGCCGGCGAATGGGCGCCGAACGCGGGCAAGAAGAAGAACTATCAGCGCTACCCGAAACCGCCGTATTCTTACCTGGCCATGATCGCCATGGTGATCCAGAACTCACCCCAGAAGaagctcactctctctcagATCCTGAAAGAGATCAGTACGCTCTTCCCCTTCTTCAAAGGGAACTACAAAGGATGGAGAGATTCGGTGCGGCACAACCTGTCCTCCTACGACTGCTTCGTCAAGGTGCTGAAGGATCCGGGGAAGCCTCAGGGGAAGGGGAATTTCTGGGCTGTGGAGGTGAGCAGGGTCCCTCTGGAGCTGCTGAAGAGGCAGAACACGGCCGTGTCCAGACAAGACGAAACCATCTTCGCCCAGGACCTGGCGCCCTACATCCTGCAAGGGCACACTCCTGCTCAGCAAGATGAAACGCAGCCCGCCGCGCCTGACCTGCCCATCCGGCGCCCGTCCCCTGCTCCAGAAGACCTTTATCGTCCCAAACTGGACTCGTCCTTCGCTATCGATTCGCTCTTGCACAGCTTTAGACCGGCGGACGCGCTCAGGGGTCGAGGTGACGGATGGGGGACGGAGTCTAATCATCGCTCGCCACGCCCTCGATATTTTTCATCCAATCGGAGCGCGTCAGCCAGTTCCGCCAGTCCTGCGTCTTCCTCGTCGTCCGATGAAGACTGGAGAGGGATGACGCGATTCGAGGTGAGGAAACGAGTTACAGACGGAGGACCCCATGGTGCCGACGGATACGACGATTATTTCCCGCCGAGCAAAGTAGCGAAGCGCGGTGGTTCGGCGCCTCCTCCTTGGGAGCTGCCAACTTCTTATGCCAAGTACACACCCCCGAACGCCGTAGCCCCGCCCAGCATGCGCTTCAACACGAACCCTTTCATCCCTCTCGGCTCCGTTCCGTTCTACAGCCATCATGTCGCGCCCAATCACTTCGGCGCCCATTCTTACTGGCCCCTGTTATCCAGTGGGCGTGTTTCGTTACAAGCTCCGCCCCTGCTGATGGACTTGGACAGTATGTTGCAGTCAGTTCCGCCCAACAAGAGTGTGTTTGACGTGCATACGCCACCAAATCAATATGGACCTCCATTTAGCAAGTATTCCTAGCGCTGTTGCTACCGAACTGCtgctgaaataatatttttaaatgggaaatgatacatttttcacTCTCCATCCAAAGGCGGGAACGTTCACTTCTTCTACTAATCGACTGATGAATGTAGCGCAACAATGACCAAAAACTTTGCACTGACAGTTTGCACtcattttatctttttgttgccatttattattttttttgtaatatttctgaGAAATCTTTTAAATGTTCACCTCGACATTTTGAATGTTGTATTTTAAAACCTACCATTTTGAAAAGGTTGAAAGCAAGGTGTTGTGTAAAAACAGGGTATTTAACTGATGTTTACATGCTTTTCACGTCTTCCTAcctcgacttttttttttttattgtaaaaccgtttttaaaaagaaatgctactacctttttttttttttttttttctgtaatgctAAAATGCTACATGGCTAACCTGCATGCTAAATTCCACATGTGGCTGTAAGGCTACTGTAAACAGTAATGCTAACTGATGGTCCAATTAGCGTTTGTCGCATTGATCTGATGGATTGTGTTGATCATGTGGGTtacagatgagtgtgtgaaggagtgtgtgagtcCCAACCCCCCGGTTTGAGAGAATCTCGGTGCCGCTGCATCTGCATGTTGATGGCTCGTCGTTAGTCTGCAATCTCCTGAGCTATTCAGGGGAAACTTATCAAATGcagataggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaacattgtTTTCTATTGTTAAGGgctattttataacaaaaaaaaaaagattcattccatttctttcccctccctccctcaaaATGGTGCTTTAAGTATATAgcattttcagctttttttctttttcttttcctccttgaGATTTTAAAAGGGACACAAACCATTTGTACACACATTCTATACATGTTTTTTgtccttattttttatttggatGTGTGTAGCATTTCCCCCCACATTGTCCTCTTAGGTACTCCAAGTGGAACGGACTATTTGTTCACATAGTTCTGTCCTTTATTTgacgtttttttgtttgtcctcTTCCGCCACATTGCAGCTCTCGAGGTACATTGTGTCTTTGCTAATCGTGTGTCTCAAACCAACACCTTGTctgacatttgcattttaaacatttccatactgttttttttttaccttctcaTGTGACTGTGAATGTATAAAGTATGAAAGCTGGCATATTGATGTTCAAGTCTTTACACCTCTTAGATcactgcaatttgccaatgatttttttaaaatgattaaaaaatgacacattgtactttttatccatttatagttacactgtGGACCTTACACAAAATAAGTTTCTGTAAagctataaagagtcgttccctcaccagcctctctttttttttttttctctctatcttga
>XM_034309398.1
AGCTGCAGGTGGTGGTGTGGAgcctcatcacacacacacacacacacacacacacacttcattagaATTTCCCAGAGTTTCTGCTTCTCAGAGGAAAAGGATTTTGagctttaaacaaaaacaaggagCTTGTGCTGAAGGGAAAGACTTTCACTGAAACacagCGAGGACGTGGAGCCCTTtactttcctcctcctcctcctccatcatcttcatcagcaTGACAAAGCTCCGGGGGGGAGCGGAGTGGCGCGGCGCGCTCAGCCCGCACAGGGAGTCCGGAGTCCGGCTACAGATCTCAACCACGCCGCGGTGCAGCGGGACCTCCGAGGAAACTTTGCGCCCGAACTCCGGGGCCATGGACGGGGTTTTGGCGCAACACAGCGGGGCTATGGGGAGTGTGTTACCACAGCTAACCGGCCCCGAAGAGAAACCTGTACCCGGATTGATGGACGAGTCTCGGGCCGGGACTCACGGTGCCTCCCGACTCCCCGCGGATCAGCACGCCGGCGAATGGGCGCCGAACGCGGGCAAGAAGAAGAACTATCAGCGCTACCCGAAACCGCCGTATTCTTACCTGGCCATGATCGCCATGGTGATCCAGAACTCACCCCAGAAGaagctcactctctctcagATCCTGAAAGAGATCAGTACGCTCTTCCCCTTCTTCAAAGGGAACTACAAAGGATGGAGAGATTCGGTGCGGCACAACCTGTCCTCCTACGACTGCTTCGTCAAGGTGCTGAAGGATCCGGGGAAGCCTCAGGGGAAGGGGAATTTCTGGGCTGTGGAGGTGAGCAGGGTCCCTCTGGAGCTGCTGAAGAGGCAGAACACGGCCGTGTCCAGACAAGACGAAACCATCTTCGCCCAGGACCTGGCGCCCTACATCCTGCAAGGGCACACTCCTGCTCAGCAAGATGAAACGCAGCCCGCCGCGCCTGACCTGCCCATCCGGCGCCCGTCCCCTGCTCCAGAAGACCTTTATCGTCCCAAACTGGACTCGTCCTTCGCTATCGATTCGCTCTTGCACAGCTTTAGACCGGCGGACGCGCTCAGGGGTCGAGGTGACGGATGGGGGACGGAGTCTAATCATCGCTCGCCACGCCCTCGATATTTTTCATCCAATCGGAGCGCGTCAGCCAGTTCCGCCAGTCCTGCGTCTTCCTCGTCGTCCGATGAAGACTGGAGAGGGATGACGCGATTCGAGGTGAGGAAACGAGTTACAGACGGAGGACCCCATGGTGCCGACGGATACGACGATTATTTCCCGCCGAGCAAAGTAGCGAAGCGCGGTGGTTCGGCGCCTCCTCCTTGGGAGCTGCCAACTTCTTATGCCAAGTACACACCCCCGAACGCCGTAGCCCCGCCCAGCATGCGCTTCAACACGAACCCTTTCATCCCTCTCGGCTCCGTTCCGTTCTACAGCCATCATGTCGCGCCCAATCACTTCGGCGCCCATTCTTACTGGCCCCTGTTATCCAGTGGGCGTGTTTCGTTACAAGCTCCGCCCCTGCTGATGGACTTGGACAGTATGTTGCAGTCAGTTCCGCCCAACAAGAGTGTGTTTGACGTGCATACGCCACCAAATCAATATGGACCTCCATTTAGCAAGTATTCCTAGCGCTGTTGCTACCGAACTGCtgctgaaataatatttttaaatgggaaatgatacatttttcacTCTCCATCCAAAGGCGGGAACGTTCACTTCTTCTACTAATCGACTGATGAATGTAGCGCAACAATGACCAAAAACTTTGCACTGACAGTTTGCACtcattttatctttttgttgccatttattattttttttgtaatatttctgaGAAATCTTTTAAATGTTCACCTCGACATTTTGAATGTTGTATTTTAAAACCTACCATTTTGAAAAGGTTGAAAGCAAGGTGTTGTGTAAAAACAGGGTATTTAACTGATGTTTACATGCTTTTCACGTCTTCCTAcctcgacttttttttttttattgtaaaaccgtttttaaaaagaaatgctactacctttttttttttttttttttctgtaatgctAAAATGCTACATGGCTAACCTGCATGCTAAATTCCACATGTGGCTGTAAGGCTACTGTAAACAGTAATGCTAACTGATGGTCCAATTAGCGTTTGTCGCATTGATCTGATGGATTGTGTTGATCATGTGGGTtacagatgagtgtgtgaaggagtgtgtgagtcCCAACCCCCCGGTTTGAGAGAATCTCGGTGCCGCTGCATCTGCATGTTGATGGCTCGTCGTTAGTCTGCAATCTCCTGAGCTATTCAGGGGAAACTTATCAAATGcagataggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaacattgtTTTCTATTGTTAAGGgctattttataacaaaaaaaaaaagattcattccatttctttcccctccctccctcaaaATGGTGCTTTAAGTATATAgcattttcagctttttttctttttcttttcctccttgaGATTTTAAAAGGGACACAAACCATTTGTACACACATTCTATACATGTTTTTTgtccttattttttatttggatGTGTGTAGCATTTCCCCCCACATTGTCCTCTTAGGTACTCCAAGTGGAACGGACTATTTGTTCACATAGTTCTGTCCTTTATTTgacgtttttttgtttgtcctcTTCCGCCACATTGCAGCTCTCGAGGTACATTGTGTCTTTGCTAATCGTGTGTCTCAAACCAACACCTTGTctgacatttgcattttaaacatttccatactgttttttttttaccttctcaTGTGACTGTGAATGTATAAAGTATGAAAGCTGGCATATTGATGTTCAAGTCTTTACACCTCTTAGATcactgcaatttgccaatgatttttttaaaatgattaaaaaatgacacattgtactttttatccatttatagttacactgtGGACCTTACACAAAATAAGTTTCTGTAAagctataaagagtcgttccctcaccagcctctctttttttttttttctctctatcttga

Function

NR:

description
PREDICTED: forkhead box protein H1

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0010159 specification of animal organ position biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0035054 embryonic heart tube anterior/posterior pattern specification biological_process
GO:0060971 embryonic heart tube left/right pattern formation biological_process
GO:0001568 blood vessel development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0048327 axial mesodermal cell fate specification biological_process
GO:0014028 notochord formation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0048382 mesendoderm development biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0001947 heart looping biological_process
GO:0021501 prechordal plate formation biological_process
GO:0021508 floor plate formation biological_process
GO:0060063 Spemann organizer formation at the embryonic shield biological_process
GO:0032444 activin responsive factor complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG:

id description
K09400 FOXH; forkhead box protein H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928452.2 True 3038 mRNA 0.48 4 1875655 1882978
XM_034309398.1 False 3035 mRNA 0.48 4 1875654 1882978

Neighbor

gene id symbol gene type direction distance location
LOC113535036 NA coding upstream 24460 1846228 ~ 1851194 (+)
LOC113535035 NA coding upstream 30905 1838763 ~ 1844749 (+)
LOC117598580 NA coding upstream 161157 1709949 ~ 1714497 (+)
klhl11 klhl11,LOC107674689,LOC107556757,LOC107551837 coding upstream 266757 1600541 ~ 1608897 (+)
aclyb LOC108431393,LOC103369716 coding upstream 273389 1579297 ~ 1602265 (+)
stat5b LOC108273804,LOC108431398,LOC107716464,LOC107653267 coding downstream 22230 1905208 ~ 1919420 (+)
ghdc ghdc coding downstream 43421 1926399 ~ 1935741 (+)
LOC113535328 rab5c,LOC108274320,LOC103035226,LOC108431395 coding downstream 103542 1986520 ~ 1991390 (+)
drosha drosha,rnasen,LOC107556767 coding downstream 109439 1992417 ~ 2049358 (+)
LOC113535349 LOC108273450 coding downstream 221347 2104325 ~ 2117109 (+)
G189280 NA non-coding upstream 12002 1863202 ~ 1863652 (+)
G189245 NA non-coding upstream 99222 1775605 ~ 1776432 (+)
G189190 NA non-coding upstream 263434 1609826 ~ 1612220 (+)
G189170 NA non-coding upstream 329072 1545798 ~ 1546582 (+)
G188770 NA non-coding upstream 825034 1046500 ~ 1050620 (+)
G189293 NA non-coding downstream 4672 1887650 ~ 1887870 (+)
LOC117598584 NA non-coding downstream 41006 1923984 ~ 1925704 (+)
G189477 NA non-coding downstream 260174 2143152 ~ 2145756 (+)
G189555 NA non-coding downstream 412108 2295086 ~ 2295305 (+)
G189563 NA non-coding downstream 425248 2308226 ~ 2309418 (+)
LOC117598477 NA other upstream 209841 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 901436 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1090663 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1653235 137521 ~ 222419 (+)
LOC117598558 NA other downstream 54709 1937687 ~ 1952224 (+)
pyyb NA other downstream 642078 2525056 ~ 2528820 (+)
G189864 NA other downstream 877715 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1087147 2970125 ~ 3021609 (+)
G190028 NA other downstream 1355466 3238444 ~ 3239216 (+)

Expression


Co-expression Network