LOC113535328 (rab5c,LOC108274320,LOC103035226,LOC108431395)


Basic Information

Item Value
gene id LOC113535328
gene name rab5c,LOC108274320,LOC103035226,LOC108431395
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1986520 ~ 1991390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928572.2
CGTAGGAGGCGGGGTTTGTGTGAATACGGGTGAGCAGAAACAccgggggggaaaaaaactgtcatGTTTTGACAAGGAAacaagtgaaagagaaaagtcCGACATCTTGCAGTGTGAATATTAACAAACGCAATTCGTCCATCTTCACTTAAACTGAAAATAAGCGCTAAGACTGATCCCGCCTTCTCGTCCTGTTCCTGTCTGAGCGTCTGGACTCGGATCCACAGCGTCAGCGCGGCGTCATGGCGGGTCGACCCAACGGGCCGGCCGCGGGGAACAAGATCTGCCAGTTTAAGCTGGTTCTGCTGGGCGAGTCGGCCGTGGGGAAGTCCAGTCTGGTCCTGCGCTTCGTCAAGGGCCAGTTCCACGAGTACCAGGAGAGCACCATCGGAGCGGCGTTCCTCACACAGACCGTGTGCCTGGACGACACGACAGTCAAGTTTgagatttgggacacagccggaCAGGAGCGCTACCACAGCCTGGCCCCCATGTACTACAGAGGAGCTCAGGCGGCCATCATCGTCTACGACATCACTAACACTgaaacGTTTGTGCGAGCGAAGAATTGGGTAAACGAGCTGCAGAAACAGGCGAGTCCCAACATTGTCATCGCCCTGTCTGGGAACAAAGCTGACCTCGCTAACAAGAGAGCTGTCGAtttccagGAAGCGCAGGCGTACGCTGATGATAACGGCCTGCTGTTCATGGAGACTTCGGCCAAAACCGCCATGAACGTCAACGAGATATTTATGGCTATTGCGAAGAAGCTGCCGAAGAACGAGCCTCAGGCTGGAGGAGGCGGGGCAAGTGGGCGTGGCCGAACCGGCGTGGACCTCCAAGACTCCGCCCACCAGAGCTCCACGGGCAAATGCTGcaactgattcactgattcactgattctgGTAGCAAAGGGTCCAAACAGAGACGTGGAGATGAGCTGAAGATGAGCACCTGGcctttatgatgatgatgatgatgatgatgattcctTCAGAGAttatgtttttgattatttttttttcctaaagaaATCATATAAGCTAgcacttcctctctgtctctctttcacttcctgtctggTTTATccatattttatgaaaatactaACATGATTCGTGTCTCGAGGCTCGTTTTTAAAACACGATAAAACCGCTGTGAGGTTGTTTTGGTGGCGGGTGGTGCGTGTACCActttcccctcctcctcctcctcctaatgttatttagtttttgtcctTTGTTTGTTGCATAACGATCTTAATGATGAGCTCACGGCGGGAATCTTACACCCAAATCATTTTGTACACGAGTGAGTATAGTTTTTACTGCAACGGTGGACATCATGGCATTATTATCggggttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatgagcaTTACCTCTGACACctgaagaaacatttttaacGTTGTGGTTTTTCAATCTGTAAAGCgggaaataaaaaaggagggaaaga

Function

symbol description
rab5c Predicted to enable GTPase activity. Acts upstream of or within several processes, including angiogenesis; gastrulation with mouth forming second; and regulation of endocytosis. Located in early endosome. Is expressed in axial vasculature; blood; and intermediate cell mass of mesoderm. Orthologous to human RAB5C (RAB5C, member RAS oncogene family).

GO: NA

KEGG:

id description
K07889 RAB5C; Ras-related protein Rab-5C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928572.2 True 1502 mRNA 0.50 6 1986520 1991390

Neighbor

gene id symbol gene type direction distance location
ghdc ghdc coding upstream 50779 1926399 ~ 1935741 (+)
stat5b LOC108273804,LOC108431398,LOC107716464,LOC107653267 coding upstream 67100 1905208 ~ 1919420 (+)
foxh1 LOC108273808 coding upstream 103542 1875654 ~ 1882978 (+)
LOC113535036 NA coding upstream 135326 1846228 ~ 1851194 (+)
LOC113535035 NA coding upstream 141771 1838763 ~ 1844749 (+)
drosha drosha,rnasen,LOC107556767 coding downstream 1027 1992417 ~ 2049358 (+)
LOC113535349 LOC108273450 coding downstream 112935 2104325 ~ 2117109 (+)
kbtbd2 kbtbd2 coding downstream 143789 2135179 ~ 2142952 (+)
avl9 avl9 coding downstream 156506 2147896 ~ 2162573 (+)
lsm5 lsm5 coding downstream 171784 2163174 ~ 2165781 (+)
LOC117598584 NA non-coding upstream 60816 1923984 ~ 1925704 (+)
G189293 NA non-coding upstream 98650 1887650 ~ 1887870 (+)
G189280 NA non-coding upstream 122868 1863202 ~ 1863652 (+)
G189245 NA non-coding upstream 210088 1775605 ~ 1776432 (+)
G189190 NA non-coding upstream 374300 1609826 ~ 1612220 (+)
G189477 NA non-coding downstream 151762 2143152 ~ 2145756 (+)
G189555 NA non-coding downstream 303696 2295086 ~ 2295305 (+)
G189563 NA non-coding downstream 316836 2308226 ~ 2309418 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding downstream 325928 2317318 ~ 2318307 (+)
G189626 NA non-coding downstream 599848 2591238 ~ 2609497 (+)
LOC117598558 NA other upstream 34296 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 320707 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1012302 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1201529 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1764101 137521 ~ 222419 (+)
pyyb NA other downstream 533666 2525056 ~ 2528820 (+)
G189864 NA other downstream 769303 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 978735 2970125 ~ 3021609 (+)
G190028 NA other downstream 1247054 3238444 ~ 3239216 (+)
G190212 NA other downstream 1409877 3401267 ~ 3405009 (+)

Expression


Co-expression Network