si:ch211-207i20.2 (LOC108274000)


Basic Information

Item Value
gene id si:ch211-207i20.2
gene name LOC108274000
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 139859 ~ 151454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928597.2
CTTCCACTAAGGGCTGCGATTGTTTCCTGAAGTATTTTTACTAGCTCGTTAGAAAAGTATATTTGTGTACTATTTCCACTGAATAAGAGCAGTGTTTATCGGAGTGTCGTGAGTAAAAGTAAATACAGCGCGGTCATGTCGCAGTGTGTGGCGCTGCAGACGCGCTTAGCCTCCGTGTTACAGGCTTTAATTCACACAGTTGTGGCGGAAATGTGCAAACTGCTCCAGGAAAGATCCGAGTTCATTTTAAACCTCCAGCTTTCTCAGcaacaaagtgaaaaacagaagcTAAAAGAACTGATTCAGACGGAAACCGAGCAGAAGATGaaacagTTTGCATCAGTCATGGAGATCTTGGGCAACGAGGCTCTGGGTAAAATCATCAAACTTGTAGATGAGAACAAGTTCCTGTTGGATATGGAGTGCAAAACATTCTCAGGGAAGAGAGCAAAACGTCCGGGAAGCATTCTGAACATTCTGTCAGCCGACGGGCCGGtTTCAGAAGAGGAACATTCCTATGACGGCCGTGGGAGAAACTCTGAGGCACGAGCAAGATGCGAGGCTGCAGACACAGTGGAACCTCAGCGTCCTGAATCTCCTCTCACGCTTGCTGTGACGATTAAAGATGAGCTCGGAAACATCGACCTGAAGTCCATCATCGCAGATCACCTAGACGTGCCGTCAGAGGAAGTGAGAACACACGCAGAGGACAGTGAGGGTCATCAGGAAGCCGGTAGCTTTGGgggaaattcttttatttgtgCTGAGTGTGGGAGAACGTTTCTGTCCATGAGCCGCCTCAGGTCACACCAGCAGGTTCACAGTGGAGAGAAACCGTTCAGCTGCATGCTCTGTGGAAAAGCCTTCGCTCACAAGCAGAGCCTGGCAGATCACCATCGCGTTCACACAGCGGAAAAATCCTTCAGCTGCAAAGACTGCGGCAAATGCTTCGGGAAGGCCGCGCACCTCAGGACACACGCGGCCGTCCACAGCGGAGAGAAGCCCTTCGGCTGCGACGTGTGTGGCAAGAAGTTCAGCATCTCGCAGAACCTGACCCggcaccagcacacacacacaggccagaAGAACTTCCCATGTTCCATCTGTGGTAAGAGCTTCACCCGAGCGAAGACCCTCATCACGCACCAGCTCATCCACACGGGACAGAAACCGCACTCTTGCATGGAATGTGGACGAGCCTTCAGGCACCTAGTGAACCTGCGCAACCACGAGCGCATTCACACGGACTTGCGGCCGTACTCCTGCGACCTGTGCGGGAAGACGTTCCGCCACACGGTGAACCTCAAGATCCATAAGCGCATTCACACCGGGGAGAAGCCGTTCACGTGCAAAGAGTGTGGCAAGAGCTTCAGCCAGCAGAGCAGCCTCGTCTCTCACAGCCGCACGCATTCGGACCTGAAACCGTTCGGCTGTAGCTACTGCAGCAAGCGCTTCAACAACACCAACAGTCTGAAGCTGCACGAGCGCACTCACACGGGCGAGAAGCCATACAGCTGCGAGTTCTGCGGGAAATGCTTCAGTCAGGGCAGTCACCTACGCACGCACAAACGCCACATCCACGGAGGAGGCAAACAGTACATATGCGACAAGTGCGGAAAGCGCTACTCCGACCCGCGcaatctcaaaatgcacaagtGCGTGTACGCTTCAGCGTAGTCACTGTCATCGGTTCTGCTTTTCTCTTAAATACCACACAGTTGCAAAAGTAGGATAAAAGAGCTGATTGTTGCTGTTTTGTTAACTTCCACCATGTTGTGGTGTTACATATTGCACTAGTGCTGatagtattaatatttatattactaaTATTTTGGCTGTCTGTAAAtacatgtataaaatatttcaatgttaTATCAAATAATTTATATTGTTTAGTAAACAGGTATGATTAGGTATGAAAAGGAGCAGCACATCTCCCCACTGTGTTTTACGAAACCTTGTAAAGGGTCTGGAGATGCTGCTTTATATTTAGGTCACTTTCGCACACATGCTGTtcgatttcttttttaattttagaataaat
>XM_026928598.2
TTCCACTAAGGGCTGCGATTGTTTCCTGAAGTATTTTTACTAGCTCGTTAGAAAAGTATATTTGTGTACTATTTCCACTGAATAAGAGCAGTGTTTATCGGAGTGTCGTGAGTAAAAGTAAATACAGCGCGGTCATGTCGCAGTGTGTGGCGCTGCAGACGCGCTTAGCCTCCGTGTTACAGGCTTTAATTCACACAGTTGTGGCGGAAATGTGCAAACTGCTCCAGGAAAGATCCGAGTTCATTTTAAACCTCCAGCTTTCTCAGcaacaaagtgaaaaacagaagcTAAAAGAACTGATTCAGACGGAAACCGAGCAGAAGATGaaacagTTTGCATCAGTCATGGAGATCTTGGGCAACGAGGCTCTGGGTAAAATCATCAAACTTGTAGATGAGAACAAGTTCCTGTTGGATATGGAGTGCAAAACATTCTCAGGGAAGAGAGCAAAACGTCCGGGAAGCATTCTGAACATTCTGTCAGCCGACGGGCCGGAAGAGGAACATTCCTATGACGGCCGTGGGAGAAACTCTGAGGCACGAGCAAGATGCGAGGCTGCAGACACAGTGGAACCTCAGCGTCCTGAATCTCCTCTCACGCTTGCTGTGACGATTAAAGATGAGCTCGGAAACATCGACCTGAAGTCCATCATCGCAGATCACCTAGACGTGCCGTCAGAGGAAGTGAGAACACACGCAGAGGACAGTGAGGGTCATCAGGAAGCCGGTAGCTTTGGgggaaattcttttatttgtgCTGAGTGTGGGAGAACGTTTCTGTCCATGAGCCGCCTCAGGTCACACCAGCAGGTTCACAGTGGAGAGAAACCGTTCAGCTGCATGCTCTGTGGAAAAGCCTTCGCTCACAAGCAGAGCCTGGCAGATCACCATCGCGTTCACACAGCGGAAAAATCCTTCAGCTGCAAAGACTGCGGCAAATGCTTCGGGAAGGCCGCGCACCTCAGGACACACGCGGCCGTCCACAGCGGAGAGAAGCCCTTCGGCTGCGACGTGTGTGGCAAGAAGTTCAGCATCTCGCAGAACCTGACCCggcaccagcacacacacacaggccagaAGAACTTCCCATGTTCCATCTGTGGTAAGAGCTTCACCCGAGCGAAGACCCTCATCACGCACCAGCTCATCCACACGGGACAGAAACCGCACTCTTGCATGGAATGTGGACGAGCCTTCAGGCACCTAGTGAACCTGCGCAACCACGAGCGCATTCACACGGACTTGCGGCCGTACTCCTGCGACCTGTGCGGGAAGACGTTCCGCCACACGGTGAACCTCAAGATCCATAAGCGCATTCACACCGGGGAGAAGCCGTTCACGTGCAAAGAGTGTGGCAAGAGCTTCAGCCAGCAGAGCAGCCTCGTCTCTCACAGCCGCACGCATTCGGACCTGAAACCGTTCGGCTGTAGCTACTGCAGCAAGCGCTTCAACAACACCAACAGTCTGAAGCTGCACGAGCGCACTCACACGGGCGAGAAGCCATACAGCTGCGAGTTCTGCGGGAAATGCTTCAGTCAGGGCAGTCACCTACGCACGCACAAACGCCACATCCACGGAGGAGGCAAACAGTACATATGCGACAAGTGCGGAAAGCGCTACTCCGACCCGCGcaatctcaaaatgcacaagtGCGTGTACGCTTCAGCGTAGTCACTGTCATCGGTTCTGCTTTTCTCTTAAATACCACACAGTTGCAAAAGTAGGATAAAAGAGCTGATTGTTGCTGTTTTGTTAACTTCCACCATGTTGTGGTGTTACATATTGCACTAGTGCTGatagtattaatatttatattactaaTATTTTGGCTGTCTGTAAAtacatgtataaaatatttcaatgttaTATCAAATAATTTATATTGTTTAGTAAACAGGTATGATTAGGTATGAAAAGGAGCAGCACATCTCCCCACTGTGTTTTACGAAACCTTGTAAAGGGTCTGGAGATGCTGCTTTATATTTAGGTCACTTTCGCACACATGCTGTtcgatttcttttttaattttagaata

Function

NR:

description
PREDICTED: zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928597.2 True 2044 mRNA 0.49 5 139859 151454
XM_026928598.2 False 2034 mRNA 0.49 5 139860 151451

Neighbor

gene id symbol gene type direction distance location
LOC113535195 LOC108273631 coding upstream 3071 134237 ~ 136788 (+)
LOC113535310 NA coding upstream 14020 121267 ~ 125839 (+)
LOC113536986 LOC108273772,LOC108273771 coding upstream 33939 83710 ~ 105920 (+)
LOC113536897 NA coding upstream 68702 14641 ~ 71157 (+)
LOC117598554 NA coding downstream 122927 274381 ~ 275446 (+)
btbd16 btbd16 coding downstream 569597 721051 ~ 753040 (+)
htra1b htra1,LOC107660481 coding downstream 642984 794438 ~ 823982 (+)
zgc:174164 NA coding downstream 684597 836051 ~ 856083 (+)
get4 get4,LOC104959995,LOC103374619 coding downstream 706614 858068 ~ 867809 (+)
LOC113537089 NA non-coding upstream 131344 8047 ~ 8515 (+)
G188466 NA non-coding downstream 6058 157512 ~ 182875 (+)
LOC113535322 NA non-coding downstream 92469 243923 ~ 254748 (+)
G188605 NA non-coding downstream 357576 509030 ~ 511976 (+)
G188681 NA non-coding downstream 482946 634400 ~ 634983 (+)
G188694 NA non-coding downstream 541505 692959 ~ 694469 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other downstream 573579 725033 ~ 784991 (+)
LOC113535146 LOC108261429 other downstream 806078 957532 ~ 974218 (+)
LOC117598477 NA other downstream 1416062 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1786233 1937687 ~ 1952224 (+)
pyyb NA other downstream 2373602 2525056 ~ 2528820 (+)

Expression


Co-expression Network