dnajc9 (dnajc9)


Basic Information

Item Value
gene id dnajc9
gene name dnajc9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3894283 ~ 3899869 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934608.2
ACTATTCACTACACTGAAGAATCACGAGCACTATATAGCGCACTGCTTATTCATCATTCAACGCCAGCAGCCACATTTTGTGACACGAACCAACACCAGcatacattttgtaatattctGACATTTTTGTAGCTATGTAGTGCTTTATAGTGGTTGTTCCCGCCGCCTTATTTTGTTGTACCCCTAGCGCCCTAGGTAGGGAGTGTAGTGTGGTTTGTAACGCGCCCTTTTCTCGAGCGCGCGGTAAATTTTGCTGCGTTTGTGCTGCTGGTTTTGTAAAAACGTCAGGAAAGGCCTTCATACGAAGTTAGATCCTTGTTTTGTGGGACCCATGGGTTTGTTACAGCAATGTGCCGAGCTCTTCAACACATCCAACCTTTATGAGGTGCTCTGTGTGGCGAAGGAGGCATCGGATGCAGAGCTGCGACGTGGTTACTATAAACTCTCCCTGCAGGTTCATCCAGACAGAGCACCTGGTGACGAACAGGCCACCATCAAGTTTCAGGTACTAGGAAAAGTCTATGCTGTGTTGAGCGACAAGGACCAAAGAGCTGTGTATGATGAGCAGGGTGTAGTAGATGAAGAGTTGGATTCACTCAACCAAGACCGCAACTGGGAAGAACATTGGAGAAGGCTGTTTCCAAagATAACTTTGCAGGACATAATTGACTTTGAGAAGCAGTATAAGGATTCGGAGGAAGAGAAGCAGGACCTAAAGAAGCTCTACCTGCTGCATGAGGGAGACATGGACCGCATCATGGAGTCAGCACTGTGCAGCAGTCATGACGACGAGCCTCGTGTGCGGAACATCCTGCAACAAGCCATAGATGATAAAGATGTGCCAGTCTACAGAGTCTTTACTCATGAAAGTGCCAAGAAAAAGGCCACCCGCAGGAGGAAGGCAGAGAAAGAGCAGCAAGAGGCTGAGGAGCTCCAAAGAGAGATGGGGCTGAGTACAGAGGATAGCCTAGTGGCCATGATCCAGCGAAGACAGAAGTCCAAAGAAAAAGATTTTAACTCGTTCATCTCAGATCTAGAGGCCAAGTACTGCAAGAAGTCTTCCAAGGGAAAGAAGGCgaagaaaaactgaaatatgcaaatatgaaaCAGGCAGTTGCTTGTATTGGGTGTTGTTGTGTCACCTTACTGCTTTCCACACTTTGGACAGAAAATTACAACCATCTTTTAGAGCCCAAGGTTTCATGATTGGAACTGGACTCCCGGAAAAGCCTACAGGAAGGCAGTGACTGTCttctatttgtatatttttcttcagTTGCTGTTGGGGCTGCACCAATTCCATACTGCATATCTGTATTAGACCAATATAAGAATTAAATTGAATCCACCACTGATTAAAATTTTGccatatatgtttatataggTTGTAAACACTGACACAACTGATGTTAACTAATACAATTTGACTCTTGAGTGTCAATATATTTATGGGATTGTTCCAAATCATGCCTGCAATATTTCATGTTACTTGGCAGCAGTGGCTTGTAGAAAGCAGGCTCAGTTACTGTGAGGGTTTTAGTATTAGATAATTAGAGTTCCGATATTGATGTGGTCAAACTTGGAATGCATAGTATTCTGGTGCATCTCTATTTGCTATGCATGTTTCTTTATTCTCTACAAGCAGAGCTCCTCCTCGCTGTACAACATAAAAACCCTGAATAAGTAATTTAATGAACAGTTGTAGGTACTGTACTATGGCCACTTGATTATGTTCAGTTATATGACAAGTAGAAAATAGTCCCTGTATTACATATGTATAACACAGGCATGCATGAATGAGGGCAAGTGTGTGTAACACCAAAacattcatttgtatttttgttcaacatggatgacaatttaatttaaaaatgtagacaATGATGAGTTCAGAATTATCCTAGCTTTCTGTCAGCAATTCTTTATTCACTTTTTGTGGCACTTGTACATATATTGTTTTGGACAAAgtctaaatgtaataaatgttacttttttttca

Function

symbol description
dnajc9 Predicted to enable heat shock protein binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; corneal epithelial cell; head; and immature eye. Orthologous to human DNAJC9 (DnaJ heat shock protein family (Hsp40) member C9).

NR:

description
dnaJ homolog subfamily C member 9-like

GO: NA

KEGG:

id description
K09529 DNAJC9; DnaJ homolog subfamily C member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934608.2 True 1999 mRNA 0.42 6 3894283 3899869

Neighbor

gene id symbol gene type direction distance location
usp22 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding upstream 8543 3850678 ~ 3885740 (+)
cops3 cops3 coding upstream 44654 3834106 ~ 3849629 (+)
pemt pemt coding upstream 121654 3731785 ~ 3772629 (+)
prdm9 LOC108274183 coding upstream 213684 3667153 ~ 3680599 (+)
LOC113547491 LOC108273563 coding upstream 476352 3416204 ~ 3417931 (+)
LOC113527654 slc39a11 coding downstream 131031 4030900 ~ 4159201 (+)
trnae-cuc_25 NA coding downstream 533372 4433241 ~ 4433312 (+)
LOC113527300 NA coding downstream 644108 4543977 ~ 4547730 (+)
LOC113527299 NA coding downstream 663944 4563813 ~ 4567522 (+)
vstm4b vstm4,LOC108437315 coding downstream 670189 4570058 ~ 4586500 (+)
G190423 NA non-coding upstream 109185 3784232 ~ 3785098 (+)
G190352 NA non-coding upstream 205951 3688098 ~ 3688332 (+)
LOC117598605 NA non-coding upstream 361040 3522966 ~ 3533243 (+)
G190279 NA non-coding upstream 383110 3510795 ~ 3511173 (+)
G190277 NA non-coding upstream 386056 3508025 ~ 3508227 (+)
G190462 NA non-coding downstream 71191 3971060 ~ 3971933 (+)
LOC117598473 NA non-coding downstream 80811 3980680 ~ 3994201 (+)
LOC117598657 NA non-coding downstream 89564 3989433 ~ 3992410 (+)
LOC113527450 NA non-coding downstream 278142 4178011 ~ 4238378 (+)
G190668 NA non-coding downstream 333026 4232895 ~ 4286651 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 110674 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 171040 3697794 ~ 3723243 (+)
LOC113547484 LOC108273453 other upstream 440857 3430313 ~ 3453426 (+)
G190212 NA other upstream 489274 3401267 ~ 3405009 (+)
G190028 NA other upstream 655067 3238444 ~ 3239216 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other downstream 3478 3903347 ~ 3930443 (+)
lrrc18b lrrc18 other downstream 693238 4593107 ~ 4596029 (+)
G190865 NA other downstream 855228 4755097 ~ 4839369 (+)
gngt2b NA other downstream 1403208 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 1430173 5330042 ~ 5340563 (+)

Expression


Co-expression Network