med9 (med9)


Basic Information

Item Value
gene id med9
gene name med9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3784309 ~ 3785130 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934964.2
TTGATTCAGCAACGCGTGCTGATGACGTAAGGGGAATGTGGGCGTGGTTGTAATCATTCAAACATGGCGACTCCCGTTGCGGTGGTGGACGATACAGAAGATTACTCCTTTTTGCCGCTTATACACGATATTATCAAGTGCATGGATAAAGACAACCAGGATGTACACCAGGAGTTAAACAAGTTGAGGACGCGGATCCAGGACACGCGGGAGCAGATCTTGGCCATGCCCGGCATCGACCTGAGCTCTGAGGTGCAGCAGCACAAACTCCGCACCCTGAGAGAACAAGTCCGCACCAAGAACCAGCTGTTACAGAAATACAAGGGCTTGTGCATGTTTGACATCCCCAAACCCTCCTGATGTACATACCATAACATTAAGGAACTTTCAGACTATTGtttgaagacaaaaaaacgccTTTAACGGAGACGTGGCGTGGATCCTGCTCCAAATGAGGACACTTTCGCATAAATCAGTATACCGTGtaaacctttttattttgcatatataaTAAACAGCACCTGTTTTATATCA

Function

symbol description
med9 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex.

NR:

description
dexamethasone-induced Ras-related protein 1-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15149 MED9; mediator of RNA polymerase II transcription subunit 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934964.2 True 534 mRNA 0.46 2 3784309 3785130

Neighbor

gene id symbol gene type direction distance location
LOC113539064 NA coding downstream 133285 3648368 ~ 3651024 (-)
neurod2 neurod2 coding downstream 387951 3392544 ~ 3396358 (-)
med1 med1 coding downstream 431760 3330026 ~ 3352549 (-)
LOC113547465 LOC108274351 coding downstream 462687 3278909 ~ 3321622 (-)
LOC113547469 elob,tceb2,LOC102782282,LOC103367351,LOC100692966,LOC103036770,LOC108427344,LOC102795145 coding downstream 541666 3238419 ~ 3242643 (-)
LOC113539277 nt5m,LOC107719901 coding upstream 30817 3815947 ~ 3830814 (-)
arg1 arg1,LOC108273904 coding upstream 145310 3930440 ~ 3935138 (-)
heatr1 heatr1,LOC107560530,LOC107675669,LOC102797743 coding upstream 153152 3938282 ~ 3971885 (-)
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding upstream 215319 4000449 ~ 4004877 (-)
LOC113527563 LOC108273452,LOC108437319 coding upstream 228717 4013847 ~ 4016313 (-)
G190419 NA non-coding downstream 7337 3776733 ~ 3776972 (-)
G190354 NA non-coding downstream 86888 3693964 ~ 3697421 (-)
G190351 NA non-coding downstream 96801 3687306 ~ 3687508 (-)
LOC117598641 NA non-coding downstream 128699 3651026 ~ 3655610 (-)
G190336 NA non-coding downstream 151887 3615420 ~ 3632422 (-)
LOC117598488 NA non-coding upstream 60655 3845785 ~ 3849920 (-)
G190490 NA non-coding upstream 135061 3920191 ~ 3925230 (-)
G190563 NA non-coding upstream 251521 4036651 ~ 4037340 (-)
G190656 NA non-coding upstream 374646 4159776 ~ 4161007 (-)
G190731 NA non-coding upstream 469363 4254493 ~ 4258754 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 928816 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 956557 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 972918 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 1174536 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1573330 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1126604 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1164033 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1274368 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 1699561 5484691 ~ 5490925 (-)
G191430 NA other upstream 1825990 5611120 ~ 5613954 (-)

Expression


Co-expression Network