arg1 (arg1,LOC108273904)


Basic Information

Item Value
gene id arg1
gene name arg1,LOC108273904
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3930440 ~ 3935138 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935101.2
TGGATCAGTTCCTAGGCTCGGGAGTGCGCTGGAGCGCGTGAGCCGCTGGAGCGCGTGAGCCGTGCTGTGCTTCTTTTCAGAGGCGTTTAGAGAGCGGACACAGCATCAGCATCGCGATGAAGATGTTAAACATCGCCTTCAGAATATTCCGAAGAGACCTCCACTCTGTCGGAATAATTGGAGCACCTTTTTCTAAAGGACAGCCCAGGGACGGTGTCCAGCTGGGACCAGATGTGATTCGGGAAGCTGGACTGGTGAAGAAACTAGAAGGCCAAGGTTGTGTGGTGAAGGATTATGGTAATTTAATATTTGAAGAAGTGTCCAATGATGAGCCCATCGGGAGGACAAAACAACCCCGGGTGGTTGGTCTTGCCAACAAAAAGGTTGCTGATGCTGTGCAGAGAGTTAAGACTGACGGCCAAACTTGTGTAATGCTTGGAGGAGATCACAGTTTAGCAGTTGGTTCAATCCATGGTCATGCAGCCTGCAGACCTGAGCTGAGTGTAGTGTGGGTGGATGCCCATGCTGACATCAACACACCTCTAACCAGTCCAACAGGAAACATCCACGGGCAGCCCATGTCCTACCTCATCCACGAGCTATGCACTAAGATTCCTGTCATGCCAAACTTTTCATGGATAAAGCCTTGCATAGCAGCAAAAGATGTAGTGTACATTGGACTCAGAGATGTAGACCCAGAGGAACATTACATCCTGAAACACCTGGGTATTAAGACTTTCTCTATGACAGAGGTAGATGGTCTTGGAATTGCCAAGGTTATGGAACAGATGTGTGATCATATATTTTCAAAGATAAAAAAACCCATCCACCTGAGTTACGATATTGACGCCCTGGATCCCTCAGTGGCACCAGCCACAGGAACTCCAGTGATAGGCGGCCTGACATACAGAGAGGGCATCTACATCACTGAGTATTTGTGTCAAACAGGGCTCCTGTCTGCTATTGATGTCGTGGAGGTGAACCCAAAGCAAGCCAAAAGAAAGGAAGAGGTTCACTTTACAGCCAATGTGGCGGTGGATCTCGTGTTAGGCTGTTTTGGACGAGTGCGTGAAGGATCACACCCAGCCAATTACAAAATCCCAGAACCATAAGTGCAAAATGTCCATATTCAGACTTATTCCTGgaaatctgtttatttcatgCATGCAACAAGATTAACTGTAGTAAAACAAGTAGACCTTGACACAAACAGGATCGACAGAGATGCCTCCCCCACCACCAAGTCTAGTCTGTCTTGTAACAATTTTTTATGTCTCAAATATCCTTAAAATGCACTTCAAACAGGAAGCAAGCTATTGAAAAAACCTATTTCAGACATCAGGCCTTGTTGTGACCTAGACCCTGTTTGTTTCAATTCAAAAATCCAATCAATTCAACTATAAATTCTACAAAccttcaaccactcgttcttgggACTGTGCTAAAAAGTATTGCGGCTGGACAAGACAGACCACCTAGTGGTGGAAACATAATATGAAATACACacaatcatttttattacttatttttattcaattacCCATATATGagtgtttatttctcttgtGGTATTTCACTGTTGACAGATTTGGTGGAAAACTTTAACAGAATAAAAGCATACAAACAGATAACTAGA

Function

symbol description
arg1 Predicted to enable arginase activity and manganese ion binding activity. Predicted to be involved in arginine catabolic process to ornithine. Predicted to act upstream of or within arginine metabolic process and urea cycle. Predicted to be active in cytosol. Is expressed in digestive system; eye; and reproductive system. Human ortholog(s) of this gene implicated in asthma; hepatocellular carcinoma; and hyperargininemia. Orthologous to human ARG1 (arginase 1).

NR:

description
PREDICTED: arginase-1-like

GO:

id name namespace
GO:0006525 arginine metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0004053 arginase activity molecular_function

KEGG:

id description
K01476 E3.5.3.1, rocF, arg; arginase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935101.2 True 1636 mRNA 0.44 8 3930440 3935138

Neighbor

gene id symbol gene type direction distance location
LOC113539277 nt5m,LOC107719901 coding downstream 99626 3815947 ~ 3830814 (-)
med9 med9 coding downstream 145310 3784309 ~ 3785130 (-)
LOC113539064 NA coding downstream 279416 3648368 ~ 3651024 (-)
neurod2 neurod2 coding downstream 534082 3392544 ~ 3396358 (-)
med1 med1 coding downstream 577891 3330026 ~ 3352549 (-)
heatr1 heatr1,LOC107560530,LOC107675669,LOC102797743 coding upstream 3144 3938282 ~ 3971885 (-)
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding upstream 65311 4000449 ~ 4004877 (-)
LOC113527563 LOC108273452,LOC108437319 coding upstream 78709 4013847 ~ 4016313 (-)
sox9a sox9 coding upstream 356813 4291951 ~ 4295240 (-)
LOC113527719 LOC108273413 coding upstream 614970 4550108 ~ 4558134 (-)
G190490 NA non-coding downstream 5210 3920191 ~ 3925230 (-)
LOC117598488 NA non-coding downstream 80520 3845785 ~ 3849920 (-)
G190419 NA non-coding downstream 153468 3776733 ~ 3776972 (-)
G190354 NA non-coding downstream 233019 3693964 ~ 3697421 (-)
G190351 NA non-coding downstream 242932 3687306 ~ 3687508 (-)
G190563 NA non-coding upstream 101513 4036651 ~ 4037340 (-)
G190656 NA non-coding upstream 224638 4159776 ~ 4161007 (-)
G190731 NA non-coding upstream 319355 4254493 ~ 4258754 (-)
G190742 NA non-coding upstream 353279 4288417 ~ 4288803 (-)
G190821 NA non-coding upstream 638544 4573682 ~ 4575530 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 1074947 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 1102688 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 1119049 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 1320667 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1719461 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 976596 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1014025 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1124360 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 1549553 5484691 ~ 5490925 (-)
G191430 NA other upstream 1675982 5611120 ~ 5613954 (-)

Expression


Co-expression Network