psmc5 (psmc5,LOC107745657,LOC107753303,LOC106579096)


Basic Information

Item Value
gene id psmc5
gene name psmc5,LOC107745657,LOC107753303,LOC106579096
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2583781 ~ 2590145 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947813.2
CAACGACACAGCCCGGAAATACGTAATAATCCAGCGGAAGTTGTCATTCGTTTTCAAGATGGCGCTAGACGGAGTTGATCATATGGAGCTGGAGGACAGTAAAGGAGGCTCAGGTCTCCGGCAGTATTACCTGTCCAAAATCGAGGAGTTACAGCTGACTGTGAACGAGAAGAGCCAGAACCTTCGGCGTCTGCAGGCCCAGAGAAATGAGCTTAATGCTAAAGTGCGTCTGCTTCGTGAGGAGCTGCAGCTGCTGCAGGAACAGGGCTCGTACGTGGGCGAGGTGGTCCGAGCCATGGACAAGAAGAAAGTGCTGGTGAAGGTTCACCCCGAGGGGAAGTTTGTGGTGGACGTGGACAAGAACATCGACATTAATGATGTGACCCCGAACTGCCGGGTAGCGCTGCGTAACGacagctacacactgcacaagATCCTCCCCAACAAGGTGGACCCTCTTGTGTCGCTCATGATGGTGGAGAAGGTGCCTGACTCTACCTACGAGATGATTGGTGGTCTGGACAAGCAGATCAAAGAGATCAAGGAGGTGATCGAGCTGCCCGTCAAGCACCCGGAGCTCTTCGAGGCCCTCGGGATCGCACAGCCGAAGGGGGTGCTGCTGTACGGACCTCCTGGCACCGGGAAGACGCTGCTGGCCCGAGCCGTGGCTCATCACACCGACTGCACCTTCATCCGCGTCTCCGGCTCCGAGCTTGTGCAGAAGTTCATCGGAGAGGGAGCGCGAATGGTGCGTGAGCTATTCGTGATGGCGCGTGAGCATGCGCCCTCCATCATCTTCATGGATGAGATCGACTCCATCGGCTCCTCGCGTCTCGAGGGAGGCTCTGGTGGAGACAGTGAGGTGCAGCGTACCATGCTCGAGCTCCTCAACCAGCTCGACGGCTTTGAGGCCACCAAGAACATCAAGgTCATCATGGCCACCAACCGCATAGACATCCTCGACTCGGCTCTGCTCCGGCCCGGCCGCATCGACCGGAAGATCGAGTTCCCACCTCCCAACGAGGAGGCCCGTCTGGACATCCTGAAGATCCACTCACGCAAAATGAATCTGACACGTGGCATCAACCTGCGCAAAATCGCCGAGCTCATGCCAGGGGCATCAGGTGCTGAGGTTAAGGGCGTTTGTACAGAAGCCGGTATGTACGCCCTGCGAGAGAGGAGGGTCCACGTCACCCAGGAAGATTTCGAGATGGCTGTCGCAAAGGTGATGCAGAAGGACAGCGAGAAGAACATGTCTATCAAGAAGCTCTGGAAGTAGAGCCTTTATCGCCAGCGCCTTGTAACCTCAACtgtattcttttgttttgtttttttttttttataactgtgccctgaatttattttaaataaatggtgTCTCCTGTTCAGAA
>XM_026947814.2
AGATGGCGCTAGACGGAGTTGATCATGTAAGTTCTGATTCcttcaaatgaaacaaatcGCAGCTTCGTTGTACTAATATGGAGCTGGAGGACAGTAAAGGAGGCTCAGGTCTCCGGCAGTATTACCTGTCCAAAATCGAGGAGTTACAGCTGACTGTGAACGAGAAGAGCCAGAACCTTCGGCGTCTGCAGGCCCAGAGAAATGAGCTTAATGCTAAAGTGCGTCTGCTTCGTGAGGAGCTGCAGCTGCTGCAGGAACAGGGCTCGTACGTGGGCGAGGTGGTCCGAGCCATGGACAAGAAGAAAGTGCTGGTGAAGGTTCACCCCGAGGGGAAGTTTGTGGTGGACGTGGACAAGAACATCGACATTAATGATGTGACCCCGAACTGCCGGGTAGCGCTGCGTAACGacagctacacactgcacaagATCCTCCCCAACAAGGTGGACCCTCTTGTGTCGCTCATGATGGTGGAGAAGGTGCCTGACTCTACCTACGAGATGATTGGTGGTCTGGACAAGCAGATCAAAGAGATCAAGGAGGTGATCGAGCTGCCCGTCAAGCACCCGGAGCTCTTCGAGGCCCTCGGGATCGCACAGCCGAAGGGGGTGCTGCTGTACGGACCTCCTGGCACCGGGAAGACGCTGCTGGCCCGAGCCGTGGCTCATCACACCGACTGCACCTTCATCCGCGTCTCCGGCTCCGAGCTTGTGCAGAAGTTCATCGGAGAGGGAGCGCGAATGGTGCGTGAGCTATTCGTGATGGCGCGTGAGCATGCGCCCTCCATCATCTTCATGGATGAGATCGACTCCATCGGCTCCTCGCGTCTCGAGGGAGGCTCTGGTGGAGACAGTGAGGTGCAGCGTACCATGCTCGAGCTCCTCAACCAGCTCGACGGCTTTGAGGCCACCAAGAACATCAAGgTCATCATGGCCACCAACCGCATAGACATCCTCGACTCGGCTCTGCTCCGGCCCGGCCGCATCGACCGGAAGATCGAGTTCCCACCTCCCAACGAGGAGGCCCGTCTGGACATCCTGAAGATCCACTCACGCAAAATGAATCTGACACGTGGCATCAACCTGCGCAAAATCGCCGAGCTCATGCCAGGGGCATCAGGTGCTGAGGTTAAGGGCGTTTGTACAGAAGCCGGTATGTACGCCCTGCGAGAGAGGAGGGTCCACGTCACCCAGGAAGATTTCGAGATGGCTGTCGCAAAGGTGATGCAGAAGGACAGCGAGAAGAACATGTCTATCAAGAAGCTCTGGAAGTAGAGCCTTTATCGCCAGCGCCTTGTAACCTCAACtgtattcttttgttttgtttttttttttttataactgtgccctgaatttattttaaataaatggtgTCTCCTGTTCAGAA
>XM_034309572.1
TTAGCTTGCTAACGTAAGAAAAATGCTAGTGGCGAGTGTCGGCGTtcagtttgttgtttttaatttctaatttatgTCTTTTAGAGGAGGAAAGAATTCATGATGGAGCTGGAGGACAGTAAAGGAGGCTCAGGTCTCCGGCAGTATTACCTGTCCAAAATCGAGGAGTTACAGCTGACTGTGAACGAGAAGAGCCAGAACCTTCGGCGTCTGCAGGCCCAGAGAAATGAGCTTAATGCTAAAGTGCGTCTGCTTCGTGAGGAGCTGCAGCTGCTGCAGGAACAGGGCTCGTACGTGGGCGAGGTGGTCCGAGCCATGGACAAGAAGAAAGTGCTGGTGAAGGTTCACCCCGAGGGGAAGTTTGTGGTGGACGTGGACAAGAACATCGACATTAATGATGTGACCCCGAACTGCCGGGTAGCGCTGCGTAACGacagctacacactgcacaagATCCTCCCCAACAAGGTGGACCCTCTTGTGTCGCTCATGATGGTGGAGAAGGTGCCTGACTCTACCTACGAGATGATTGGTGGTCTGGACAAGCAGATCAAAGAGATCAAGGAGGTGATCGAGCTGCCCGTCAAGCACCCGGAGCTCTTCGAGGCCCTCGGGATCGCACAGCCGAAGGGGGTGCTGCTGTACGGACCTCCTGGCACCGGGAAGACGCTGCTGGCCCGAGCCGTGGCTCATCACACCGACTGCACCTTCATCCGCGTCTCCGGCTCCGAGCTTGTGCAGAAGTTCATCGGAGAGGGAGCGCGAATGGTGCGTGAGCTATTCGTGATGGCGCGTGAGCATGCGCCCTCCATCATCTTCATGGATGAGATCGACTCCATCGGCTCCTCGCGTCTCGAGGGAGGCTCTGGTGGAGACAGTGAGGTGCAGCGTACCATGCTCGAGCTCCTCAACCAGCTCGACGGCTTTGAGGCCACCAAGAACATCAAGgTCATCATGGCCACCAACCGCATAGACATCCTCGACTCGGCTCTGCTCCGGCCCGGCCGCATCGACCGGAAGATCGAGTTCCCACCTCCCAACGAGGAGGCCCGTCTGGACATCCTGAAGATCCACTCACGCAAAATGAATCTGACACGTGGCATCAACCTGCGCAAAATCGCCGAGCTCATGCCAGGGGCATCAGGTGCTGAGGTTAAGGGCGTTTGTACAGAAGCCGGTATGTACGCCCTGCGAGAGAGGAGGGTCCACGTCACCCAGGAAGATTTCGAGATGGCTGTCGCAAAGGTGATGCAGAAGGACAGCGAGAAGAACATGTCTATCAAGAAGCTCTGGAAGTAGAGCCTTTATCGCCAGCGCCTTGTAACCTCAACtgtattcttttgttttgtttttttttttttataactgtgccctgaatttattttaaataaatggtgTCTCCTGTTCAGAA
>XM_034309573.1
GATAGAATGATTAGCTTGCTAACATGGAGCTGGAGGACAGTAAAGGAGGCTCAGGTCTCCGGCAGTATTACCTGTCCAAAATCGAGGAGTTACAGCTGACTGTGAACGAGAAGAGCCAGAACCTTCGGCGTCTGCAGGCCCAGAGAAATGAGCTTAATGCTAAAGTGCGTCTGCTTCGTGAGGAGCTGCAGCTGCTGCAGGAACAGGGCTCGTACGTGGGCGAGGTGGTCCGAGCCATGGACAAGAAGAAAGTGCTGGTGAAGGTTCACCCCGAGGGGAAGTTTGTGGTGGACGTGGACAAGAACATCGACATTAATGATGTGACCCCGAACTGCCGGGTAGCGCTGCGTAACGacagctacacactgcacaagATCCTCCCCAACAAGGTGGACCCTCTTGTGTCGCTCATGATGGTGGAGAAGGTGCCTGACTCTACCTACGAGATGATTGGTGGTCTGGACAAGCAGATCAAAGAGATCAAGGAGGTGATCGAGCTGCCCGTCAAGCACCCGGAGCTCTTCGAGGCCCTCGGGATCGCACAGCCGAAGGGGGTGCTGCTGTACGGACCTCCTGGCACCGGGAAGACGCTGCTGGCCCGAGCCGTGGCTCATCACACCGACTGCACCTTCATCCGCGTCTCCGGCTCCGAGCTTGTGCAGAAGTTCATCGGAGAGGGAGCGCGAATGGTGCGTGAGCTATTCGTGATGGCGCGTGAGCATGCGCCCTCCATCATCTTCATGGATGAGATCGACTCCATCGGCTCCTCGCGTCTCGAGGGAGGCTCTGGTGGAGACAGTGAGGTGCAGCGTACCATGCTCGAGCTCCTCAACCAGCTCGACGGCTTTGAGGCCACCAAGAACATCAAGgTCATCATGGCCACCAACCGCATAGACATCCTCGACTCGGCTCTGCTCCGGCCCGGCCGCATCGACCGGAAGATCGAGTTCCCACCTCCCAACGAGGAGGCCCGTCTGGACATCCTGAAGATCCACTCACGCAAAATGAATCTGACACGTGGCATCAACCTGCGCAAAATCGCCGAGCTCATGCCAGGGGCATCAGGTGCTGAGGTTAAGGGCGTTTGTACAGAAGCCGGTATGTACGCCCTGCGAGAGAGGAGGGTCCACGTCACCCAGGAAGATTTCGAGATGGCTGTCGCAAAGGTGATGCAGAAGGACAGCGAGAAGAACATGTCTATCAAGAAGCTCTGGAAGTAGAGCCTTTATCGCCAGCGCCTTGTAACCTCAACtgtattcttttgttttgtttttttttttttataactgtgccctgaatttattttaaataaatggtgTCTCCTGTTCAGAA

Function

symbol description
psmc5 Predicted to enable TBP-class protein binding activity and thyrotropin-releasing hormone receptor binding activity. Predicted to be involved in modulation of chemical synaptic transmission; positive regulation of RNA polymerase II transcription preinitiation complex assembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex; nuclear proteasome complex; and proteasome regulatory particle, base subcomplex. Predicted to be active in postsynapse. Orthologous to human PSMC5 (proteasome 26S subunit, ATPase 5).

NR:

description
PREDICTED: 26S protease regulatory subunit 8

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0031531 thyrotropin-releasing hormone receptor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03066 PSMC5, RPT6; 26S proteasome regulatory subunit T6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947813.2 False 1391 mRNA 0.55 13 2583781 2590145
XM_026947814.2 False 1386 mRNA 0.55 13 2583781 2590089
XM_034309572.1 True 1411 mRNA 0.54 13 2583781 2589689
XM_034309573.1 False 1332 mRNA 0.55 13 2583781 2589699

Neighbor

gene id symbol gene type direction distance location
LOC113547524 gjd3 coding downstream 220496 2361824 ~ 2363285 (-)
samd14 NA coding downstream 238108 2335633 ~ 2345673 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding downstream 249129 2308241 ~ 2334652 (-)
LOC117598634 NA coding downstream 314726 2245794 ~ 2269055 (-)
LOC117598663 NA coding downstream 338066 2243875 ~ 2245715 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding upstream 15888 2606033 ~ 2615766 (-)
slc4a1b LOC108273570,LOC108410807 coding upstream 28244 2618389 ~ 2638273 (-)
LOC113547505 NA coding upstream 142071 2732216 ~ 2745395 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 266091 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 284371 2874516 ~ 2896348 (-)
G189702 NA non-coding downstream 184305 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 303028 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 421210 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 436866 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 522516 2048830 ~ 2061265 (-)
G189717 NA non-coding upstream 13048 2603193 ~ 2604096 (-)
G189810 NA non-coding upstream 65158 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 104635 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 202682 2792827 ~ 2802964 (-)
G189882 NA non-coding upstream 206362 2796507 ~ 2827807 (-)
LOC113547489 NA other downstream 372802 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 713788 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 810261 1760834 ~ 1773520 (-)
G189199 NA other downstream 1012708 1568286 ~ 1571073 (-)
G189180 NA other downstream 1018521 1564890 ~ 1565260 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 1092 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 195936 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 202901 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 261910 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2321589 4911734 ~ 4918977 (-)

Expression


Co-expression Network