tut1 (tut1)


Basic Information

Item Value
gene id tut1
gene name tut1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2503394 ~ 2515254 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947816.2
agaagaagacgaattTGTCGccgcagaagaagaagaagcgctcagtggaggaggaagaaaagcGACCTGGAGGGAGATTTGATTTCTCTGTTCTTTGAAGCACAATGGAGCCTGATCCAGACATCCAAACAGTACCGAAAGGATTCCGCTGTAAATTATGCGATGTTAATATCCCTAACGAGCCGAGTTTAGAAGCCCATATGAAGGGGAAGAAGCACCAGCACCTGTGCAGGCTGCGGGCGAAGCGGAAGGCTCAGGAGGAGAACAGCGTCTACGTCAGCGGCTTCAAGCCCGACACGTCCACCAGCGAGCTGGCGGAATATTTCCAGCAGTTCGGACCCGTGGCTGAGGTCATCGTGGACAAGGAGCGGAGTCTGTATGCCATAGTGGAGTTTGCTGAGTCTGCGAGCACCGAGGCGACGTTGGCTCAGCTGCAGCACTGTCTGGATGGACTGAAGCTCCGCGTGAAacccagagagagaaaagagttcAAGTTGGCCAGCAAGGAGAAACACGACCGCACGAAACCTCACATCAGCCTGGAGAAGCTCAACCACGAGCTCTGCCTCACATCTTCTGTAAACGAGCAGATGCAGAAAATGGTGGAGATCTTCCAGCTGAGTGAGAACGACAGCAAAGCGAGGCAGCTCGTCGTCCAGCTCCTGCAGGAGGTCCTCGTCGAATTCCTACCAGATTGTCAGATTGTACCTTTCGGCTCCTCAGTGAACACATTCGGAAGCCACTCGTGTGACCTCGATCTCGTCTTGGACCTGGAGAACACCAAAGCCTTCCAGAACCGCACCAGGAAGTCCGAGCAGATGGGCGAGAACCAGTCGGAGGACGGCCAATCAGAAGACTCCATCCTGTCCGACATCGACCTGGCCACGGCCTCCCCGGCGGAGCTGCTGGAGCTGGTGGCGGCCATTTTGAGGAAGTGCACGCCTGGAGTGCATAAGGTGCAGACAGTGAGCAGCGCGCGCCTCCCTGTGGTCAAGTTCAGCCATCGGCAGCTCAGTCTGCAGGGAGACATCACCATCAACAACAGGTTGGCGGTCCGAAACACGCGATTCCTGCAGCTGTGCTCGGGGCTCGACTCCAGAGTGCGTCCTCTCGTTTATTCCGTACGATTCTGGgccaaacagaaacaaatcGCAGGGAATCCGTCTGGCGGTGGGCCGCTGCTGAATAACTACGCGCTGACGCTGCTGGTCTTATTCTACCTGCAGACCGTCAGTCCACCTGTCCTGCCTTCTGTGGAGCAGCTCAAGAACATGGCGTgtgaggaggaggagtgtgtcATTGACGGATGGGACTGCACCTTCCCTAGTCAGCCGATCAGCGTGCCTCCCAGTAAAAACACAGACGATCTGTGCACCTTACTTTTCGGTTTCTTCACCTACTACTCCAAGTTTGATTTTCCTGGATCGGTGGTGTCTCTGAGAGCCGGGTGCACTCTTCCTATCACAGAGTTTCTGAGCAGAGATGATGAGACGCCTGATACTGCAGAAAGCTCAGACGCCGCCAGACAGAAAACAACCGTACGCCCTAAACTTGGACCTGTAAACATCCTGGACCCGTTTGAACTCCACCATAACGTAGCTGGCAACATTACTGAGCGTACACACAAGAATCTTCGCAGGGAATTCTGCGAAGCAGAGAAGTACTGCCGGAGTCTGCAGTACCAGCGCAAGTCGTCCAAGGGCAAGTCCTGGGGGCTTGTAAAGCTTTTCACGCCTCGTGTCGAGGGTGTATCCAGCTCACAGGATGCCATAGAAAAAATCCCGGAGATCATCATCCCGTTCAGGGCAGCTATTTTGACGCAGTCTTTTCGTACAGAGCTGAGTTCAGCAGCAGAGACATTCCGGGTCGTTTGGTTCAAGAAGGTCTGCTCCATCTTGGAGGTGGTGTTTAATGACATTCTCAAGTGTACACCTTCAGATCAAGTTGAGATCAGTCAAGATCAAACCAAGGCAAAAGGCGATACCGAAGAGGAGGAAGTAAACAATAATCAGAGTCTTGATAGTTCCAGCCATCAGCCCACAGCTCACGCTGGAATAAAGAGACCCCTGTCCATAGAGGAAGGtccatcctcctcttcctcacccCAGGGAAAGAGGATGAGACTGGAACCTTCAGCAGATTATCCAGAAGTGGCTCACTGGAACTGGACTCAGACACACCCGGTGTGGGCCGGCCGAAGGAAGATCCGGAGAGTTTTACTAAAAACAAGCGATGAGACCTCCAAGCCTGAAGGGGGCTGCAGCAGCATTGAGAGCAGGGTGACGCAGTATATCATAGAGAATGACTCGAACCCCAAGGACAAACTGGATTTCCAGCTGGATGCCCTCGTGGTGGGCAGTGACGAGTGCACAAAGGCGGTGCTCAAGTTTAAAGAAACTAGTGATCCTACGGGACATTTTCAAGACTTCTTCCATTTTCTCGATTCGTTCCTGCCTAAGATGGTGGAAACGCTGTTGGCTAAAtctgaataattatttttgttctttgacTGTCCTTCctgcacatttattttaaggTTGTAAAACGTAAACGTTTTGTGTTTGCTTCAGTGATAGAAACGACATTAATAACTCCATTTCTATGCAGGCACAATAATTAACAACAAATATTTGCTATAGTTTGGTTGACTTTTGGCCTTTTTTCCTTATTTGTACTCATCTAACGATTTCTTGTGATTAGTCATTCATTTCACTGTTTCTtcaggtttaaaaaagaaacaagttgtgttttggtttaaaATGGTTTGTAGTATAGTTTGGTTTgtgcattgtaaaaaaaaaaagaagttgtaAGTGCAGGTTATTAAACATGAAGCTACCAGTTTATGGTCTTCAGCTTCTGCTTTA
>XM_034309634.1
agaagaagacgaattTGTCGccgcagaagaagaagaagcgctcagtggaggaggaagaaaagcGACCTGGAGGGAGATTTGATTTCTCTGTTCTTTGAAGCACAATGGAGCCTGATCCAGACATCCAAACAGTACCGAAAGGATTCCGCTGTAAATTATGCGATGTTAATATCCCTAACGAGCCGAGTTTAGAAGCCCATATGAAGGGGAAGAAGCACCAGCACCTGTGCAGGCTGCGGGCGAAGCGGAAGGCTCAGGAGGAGAACAGCGTCTACGTCAGCGGCTTCAAGCCCGACACGTCCACCAGCGAGCTGGCGGAATATTTCCAGCAGTTCGGACCCGTGGCTGAGGTCATCGTGGACAAGGAGCGGAGTCTGTATGCCATAGTGGAGTTTGCTGAGTCTGCGAGCACCGAGGCGACGTTGGCTCAGCTGCAGCACTGTCTGGATGGACTGAAGCTCCGCGTGAAacccagagagagaaaagagttcAAGTTGGCCAGCAAGGAGAAACACGACCGCACGAAACCTCACATCAGCCTGGAGAAGCTCAACCACGAGCTCTGCCTCACATCTTCTGTAAACGAGCAGATGCAGAAAATGGTGGAGATCTTCCAGCTGAGTGAGAACGACAGCAAAGCGAGGCAGCTCGTCGTCCAGCTCCTGCAGGAGGTCCTCGTCGAATTCCTACCAGATTGTCAGATTGTACCTTTCGGCTCCTCAGTGAACACATTCGGAAGCCACTCGTGTGACCTCGATCTCGTCTTGGACCTGGAGAACACCAAAGCCTTCCAGAACCGCACCAGGAAGTCCGAGCAGCAGATGGGCGAGAACCAGTCGGAGGACGGCCAATCAGAAGACTCCATCCTGTCCGACATCGACCTGGCCACGGCCTCCCCGGCGGAGCTGCTGGAGCTGGTGGCGGCCATTTTGAGGAAGTGCACGCCTGGAGTGCATAAGGTGCAGACAGTGAGCAGCGCGCGCCTCCCTGTGGTCAAGTTCAGCCATCGGCAGCTCAGTCTGCAGGGAGACATCACCATCAACAACAGGTTGGCGGTCCGAAACACGCGATTCCTGCAGCTGTGCTCGGGGCTCGACTCCAGAGTGCGTCCTCTCGTTTATTCCGTACGATTCTGGgccaaacagaaacaaatcGCAGGGAATCCGTCTGGCGGTGGGCCGCTGCTGAATAACTACGCGCTGACGCTGCTGGTCTTATTCTACCTGCAGACCGTCAGTCCACCTGTCCTGCCTTCTGTGGAGCAGCTCAAGAACATGGCGTgtgaggaggaggagtgtgtcATTGACGGATGGGACTGCACCTTCCCTAGTCAGCCGATCAGCGTGCCTCCCAGTAAAAACACAGACGATCTGTGCACCTTACTTTTCGGTTTCTTCACCTACTACTCCAAGTTTGATTTTCCTGGATCGGTGGTGTCTCTGAGAGCCGGGTGCACTCTTCCTATCACAGAGTTTCTGAGCAGAGATGATGAGACGCCTGATACTGCAGAAAGCTCAGACGCCGCCAGACAGAAAACAACCGTACGCCCTAAACTTGGACCTGTAAACATCCTGGACCCGTTTGAACTCCACCATAACGTAGCTGGCAACATTACTGAGCGTACACACAAGAATCTTCGCAGGGAATTCTGCGAAGCAGAGAAGTACTGCCGGAGTCTGCAGTACCAGCGCAAGTCGTCCAAGGGCAAGTCCTGGGGGCTTGTAAAGCTTTTCACGCCTCGTGTCGAGGGTGTATCCAGCTCACAGGATGCCATAGAAAAAATCCCGGAGATCATCATCCCGTTCAGGGCAGCTATTTTGACGCAGTCTTTTCGTACAGAGCTGAGTTCAGCAGCAGAGACATTCCGGGTCGTTTGGTTCAAGAAGGTCTGCTCCATCTTGGAGGTGGTGTTTAATGACATTCTCAAGTGTACACCTTCAGATCAAGTTGAGATCAGTCAAGATCAAACCAAGGCAAAAGGCGATACCGAAGAGGAGGAAGTAAACAATAATCAGAGTCTTGATAGTTCCAGCCATCAGCCCACAGCTCACGCTGGAATAAAGAGACCCCTGTCCATAGAGGAAGGtccatcctcctcttcctcacccCAGGGAAAGAGGATGAGACTGGAACCTTCAGCAGATTATCCAGAAGTGGCTCACTGGAACTGGACTCAGACACACCCGGTGTGGGCCGGCCGAAGGAAGATCCGGAGAGTTTTACTAAAAACAAGCGATGAGACCTCCAAGCCTGAAGGGGGCTGCAGCAGCATTGAGAGCAGGGTGACGCAGTATATCATAGAGAATGACTCGAACCCCAAGGACAAACTGGATTTCCAGCTGGATGCCCTCGTGGTGGGCAGTGACGAGTGCACAAAGGCGGTGCTCAAGTTTAAAGAAACTAGTGATCCTACGGGACATTTTCAAGACTTCTTCCATTTTCTCGATTCGTTCCTGCCTAAGATGGTGGAAACGCTGTTGGCTAAAtctgaataattatttttgttctttgacTGTCCTTCctgcacatttattttaaggTTGTAAAACGTAAACGTTTTGTGTTTGCTTCAGTGATAGAAACGACATTAATAACTCCATTTCTATGCAGGCACAATAATTAACAACAAATATTTGCTATAGTTTGGTTGACTTTTGGCCTTTTTTCCTTATTTGTACTCATCTAACGATTTCTTGTGATTAGTCATTCATTTCACTGTTTCTtcaggtttaaaaaagaaacaagttgtgttttggtttaaaATGGTTTGTAGTATAGTTTGGTTTgtgcattgtaaaaaaaaaaagaagttgtaAGTGCAGGTTATTAAACATGAAGCTACCAGTTTATGGTCTTCAGCTTCTGCTTTA

Function

symbol description
tut1 Predicted to enable RNA adenylyltransferase activity; RNA uridylyltransferase activity; and mRNA 3'-UTR binding activity. Predicted to be involved in mRNA polyadenylation; pre-mRNA cleavage required for polyadenylation; and snRNA processing. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleolus. Predicted to be active in nuclear speck. Is expressed in head; ovary; and testis. Orthologous to human TUT1 (terminal uridylyl transferase 1, U6 snRNA-specific).

NR:

description
speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X1

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006379 mRNA cleavage biological_process
GO:0016180 snRNA processing biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function
GO:0050265 RNA uridylyltransferase activity molecular_function

KEGG:

id description
K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947816.2 False 2867 mRNA 0.50 10 2503394 2515254
XM_034309634.1 True 2870 mRNA 0.50 10 2503394 2515254

Neighbor

gene id symbol gene type direction distance location
mki67 NA coding upstream 564 2489809 ~ 2502830 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding upstream 16598 2394076 ~ 2486796 (+)
top2a top2a,LOC107598028,LOC107660475 coding upstream 142299 2347045 ~ 2361095 (+)
LOC113547531 NA coding upstream 199107 2302233 ~ 2304287 (+)
lrrc3ca lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 216340 2270632 ~ 2287054 (+)
mpp2b mpp2,LOC108273574,LOC108410806 coding downstream 15826 2531080 ~ 2574774 (+)
ngfrb LOC108273578 coding downstream 141606 2656860 ~ 2697247 (+)
LOC113547481 LOC108273850,LOC107735415 coding downstream 383635 2898889 ~ 2906026 (+)
LOC113547478 LOC108273849,LOC108443156 coding downstream 390900 2906154 ~ 2923348 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 561839 3077093 ~ 3082950 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding upstream 185087 2317318 ~ 2318307 (+)
G189563 NA non-coding upstream 193976 2308226 ~ 2309418 (+)
G189555 NA non-coding upstream 208089 2295086 ~ 2295305 (+)
G189477 NA non-coding upstream 357638 2143152 ~ 2145756 (+)
LOC117598584 NA non-coding upstream 577690 1923984 ~ 1925704 (+)
G189626 NA non-coding downstream 75984 2591238 ~ 2609497 (+)
G189678 NA non-coding downstream 90629 2605883 ~ 2608078 (+)
G189684 NA non-coding downstream 99443 2614697 ~ 2615755 (+)
LOC113547470 NA non-coding downstream 126587 2641841 ~ 2644184 (+)
G189916 NA non-coding downstream 358901 2874155 ~ 2875297 (+)
LOC117598558 NA other upstream 551170 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 837581 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1529176 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1718403 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 2280975 137521 ~ 222419 (+)
pyyb NA other downstream 9802 2525056 ~ 2528820 (+)
G189864 NA other downstream 245439 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 454871 2970125 ~ 3021609 (+)
G190028 NA other downstream 723190 3238444 ~ 3239216 (+)
G190212 NA other downstream 886013 3401267 ~ 3405009 (+)

Expression


Co-expression Network