LOC113547465 (LOC108274351)


Basic Information

Item Value
gene id LOC113547465
gene name LOC108274351
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3278909 ~ 3321622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947817.2
AAGTTCTGAGAGCGCGAGAGCGGCTGAATGAGGTGGTGTGgatgtagaagtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttcataTCTTTAACGTAAAAGATTTTAGCGTTTCGTCTCGTCGGGAtgggatattaaaaaaaagcaaccgTTCATCGTCCGCACGTGACTACAATGAATCTTTAAAGAGTCACGTTTATCGTTAATGAAGAGATGAAGACCGAGTGATGGGAGAGATCTTTCCTTAGGACGTGAATCTGCGTCAGAGAGCACGCGCGCGCTCTTTCCgttaaatagaaaaagaaacGGCTCTCCCGTATCGcgttggggggaaaaaaagatgacagaAAATGGCGAGAAGGAGAACGAACCGCATCACCGGGACCTACAACGCTCACCGGGTTCCGGTACGATCCGGCCCGAGTCCAAGCTCCAGAAACTGAAGCGCTCACTGTCATTCAAGTCAATGATGCGGAGCAAAAGTGTCGAGAACTTCTTCCAGCGGTCAAATATTGAGACCCTGCCCCCTGACAGTATCATCACTATTGAGGCTCCACCCTCCATCATTGAGTCTCCCTTTTGTGACTGTCCTTTGACCCTTGACAGGTCCCCATCCATAAGTCcaaacctgtctctctcttcacgTTCACCTTCATCAAGCCCATCCCTGTCAGTTAACTCAAatactcctcctcctcagccacGCCCGCAGAAAACACACTGTTTCTTGGAATATGTGTTTCGCCGGCCCACTGTCTGCCAGCAATGCAAGCAAATGATAACAGggAACTCAAAGCAGGGTCTGCGCTGCAAGACATGTAAACTAGCAGCACATCTGTGGTGCTCATCTGAACTTTCACAGCAGGTGTGCAATGGAAAGTCAGGGACGTTCAAGCGGAACTTCAGCTCTCCATTGCTCACTAACGAGCTGTTTACAGTCATTaaggaagccccgcccactcaagaacAGGGAAAAGGCACAGTGGACCCCGTATATGAAGCCTTGCGATACGGAACATCTCTCGCGCAAATGAGCCGATCGACATTCAATAGCATCTCAGAGTCGCCATGTCTTCAGAGTGAAGAAGGACAGGAGAAGTTGGACAGTGAAGCTGTTGCTGTAGAAGAGTGCGTTCCTGAATCTGAGGTGTGTTTGGCTGAGAGTGAGAAGAGTGTGACAGAGGACAAGATCAGTTTACAGccTCCCAGGCGTATTGAGCTTCGCGCCATTCACACCTATGTGGTGTTGTACAAGTTCCTGCCTCAGGAGAAAAACGACCTTGAGCTTCAGCCGGGTGATCGTGTTCAGGTAATCGACGACTCAAACGAGGACTGGTGGAAGGGGAAGAGTCAAGACAAAGTCGGATTTTTCCCTGCTAACTTTGTGCAGCGGGTGCGTCCTGGAGAACGAGTATGGAAGGTCACTCAGGGTTTCCATGGCAACCGCGAGAAAGGTCAAATGACTGTAAAAAGAGTTACAGATCTGCGTTGGGAAATCGGAGGAAACAGATGGATTTTTCAAGCTGACCAGCGGTAAGAAGAGAGGACTCGTACCTTCAAAGTGTGTAGTGGAGATATGAACAACCTCCTCGccatacagacacacaacaaCGGCAGggacacactctcacacaccagCAAGCACCCTGGAATGGAAGTGCACTTGCTTCGCTCACTTCATTTCACACGGCTTTGAGAATGAGACATAAAGGAAGCCATCTGACTGGCCgattctgacctctgacctcagaCACACATGACCAGTGGAACAGTTTTGGTTTGGATGATGGCACTGTAACtgtctggtgtgtgtgcgtgtgtttgtgtgtgtgtgtgagtatgttcACTCAAACATTACAGTAGCAAACAGGATCTGTGTCAAATCATGTGTGTCAGTGAACATCACTGAGAGACAGGAACAGATGCAGTGCAGGAAAAAAGAGACACATGAAGTGATTTTGCATTTACCTGTCCCATCATGCACCACTGAATGAAATGGGAGGGGATTGTAGGAGACCCGTCATGGAGAACACTGGCTAAACATAAAAAGCTGTAAAAGGTGTTGGCTGGCTAAGGGAATGTTATTGAATTAGTTTAGTTAAACCTTAGTTAAAGATGTCCCACGTTATACTGAACAGTCTCTAAtacctgtgtgtttattactgaGTCTATACACACTGTTCCACATTTCTGCACAATCATATGAACCACCTTTATACACTTAAAAAAAGTGAACGCTTCCTGTGTGTTAGAGATGTAACTGACTATGTTATTCGGATTGAATAGACGATATGCTCTAAAGCGATACCTTGAGTCTTCACTTCTAGGTACGGTCATGACTGGaggatgtagctgaggttgaggaactgtgaGAGCCTGTCACACCATGCTGATACTGCTGATATTTATACAGGAGGTTTCaggtgttttccagtgtttcctggGGGCAAAGTGATTGGATTcatatttaattgaaaaaaaatgaatttaggtttaggccatgcccactttgaattttaaatctaaatgcagacatttggagcactaaacagacacagacacagatagtgTCATCGTGTTACACCCCTACCGTTTAGTCACAATGTGTACTTACCCCAGACAAACCAGAGCTTGATTCATGTGTATTTACGTGTGATGCATAAATCTTGAGGTGTAACATTACAGTTCCATGTGTAGTTTATTAGAGACACTTGATATAAAGCTAAACAAAATAATCTTCTGTCATTCTACAAcaatcaccatcaccatcactgCTGTTAACGTTTTAACTTCgtctgtttacatttaataaacccactttatgtatgtttttctaCATGACTACATGTAGTATTTCAGTATTAGATCACAGTGTGAGATTTGA
>XM_026947818.2
cagaAAATGGCGAGAAGGAGAACGAACCGCATCACCGGGACCTACAACGCTCACCGGGTTCCGGTACGATCCGGCCCGAGTCCAAGGCTGCAGTGATAACCTCGTACACCCCACTGGCTAAGCTACAGGAGAGTGCTGTGTGATGTACTGTTTGGGCTGACGCAAACTTTAGGGCTCCAGAAACTGAAGCGCTCACTGTCATTCAAGTCAATGATGCGGAGCAAAAGTGTCGAGAACTTCTTCCAGCGGTCAAATATTGAGACCCTGCCCCCTGACAGTATCATCACTATTGAGGCTCCACCCTCCATCATTGAGTCTCCCTTTTGTGACTGTCCTTTGACCCTTGACAGGTCCCCATCCATAAGTCcaaacctgtctctctcttcacgTTCACCTTCATCAAGCCCATCCCTGTCAGTTAACTCAAatactcctcctcctcagccacGCCCGCAGAAAACACACTGTTTCTTGGAATATGTGTTTCGCCGGCCCACTGTCTGCCAGCAATGCAAGCAAATGATAACAGggAACTCAAAGCAGGGTCTGCGCTGCAAGACATGTAAACTAGCAGCACATCTGTGGTGCTCATCTGAACTTTCACAGCAGGTGTGCAATGGAAAGTCAGGGACGTTCAAGCGGAACTTCAGCTCTCCATTGCTCACTAACGAGCTGTTTACAGTCATTaaggaagccccgcccactcaagaacAGGGAAAAGGCACAGTGGACCCCGTATATGAAGCCTTGCGATACGGAACATCTCTCGCGCAAATGAGCCGATCGACATTCAATAGCATCTCAGAGTCGCCATGTCTTCAGAGTGAAGAAGGACAGGAGAAGTTGGACAGTGAAGCTGTTGCTGTAGAAGAGTGCGTTCCTGAATCTGAGGTGTGTTTGGCTGAGAGTGAGAAGAGTGTGACAGAGGACAAGATCAGTTTACAGccTCCCAGGCGTATTGAGCTTCGCGCCATTCACACCTATGTGGTGTTGTACAAGTTCCTGCCTCAGGAGAAAAACGACCTTGAGCTTCAGCCGGGTGATCGTGTTCAGGTAATCGACGACTCAAACGAGGACTGGTGGAAGGGGAAGAGTCAAGACAAAGTCGGATTTTTCCCTGCTAACTTTGTGCAGCGGGTGCGTCCTGGAGAACGAGTATGGAAGGTCACTCAGGGTTTCCATGGCAACCGCGAGAAAGGTCAAATGACTGTAAAAAGAGTTACAGATCTGCGTTGGGAAATCGGAGGAAACAGATGGATTTTTCAAGCTGACCAGCGGTAAGAAGAGAGGACTCGTACCTTCAAAGTGTGTAGTGGAGATATGAACAACCTCCTCGccatacagacacacaacaaCGGCAGggacacactctcacacaccagCAAGCACCCTGGAATGGAAGTGCACTTGCTTCGCTCACTTCATTTCACACGGCTTTGAGAATGAGACATAAAGGAAGCCATCTGACTGGCCgattctgacctctgacctcagaCACACATGACCAGTGGAACAGTTTTGGTTTGGATGATGGCACTGTAACtgtctggtgtgtgtgcgtgtgtttgtgtgtgtgtgtgagtatgttcACTCAAACATTACAGTAGCAAACAGGATCTGTGTCAAATCATGTGTGTCAGTGAACATCACTGAGAGACAGGAACAGATGCAGTGCAGGAAAAAAGAGACACATGAAGTGATTTTGCATTTACCTGTCCCATCATGCACCACTGAATGAAATGGGAGGGGATTGTAGGAGACCCGTCATGGAGAACACTGGCTAAACATAAAAAGCTGTAAAAGGTGTTGGCTGGCTAAGGGAATGTTATTGAATTAGTTTAGTTAAACCTTAGTTAAAGATGTCCCACGTTATACTGAACAGTCTCTAAtacctgtgtgtttattactgaGTCTATACACACTGTTCCACATTTCTGCACAATCATATGAACCACCTTTATACACTTAAAAAAAGTGAACGCTTCCTGTGTGTTAGAGATGTAACTGACTATGTTATTCGGATTGAATAGACGATATGCTCTAAAGCGATACCTTGAGTCTTCACTTCTAGGTACGGTCATGACTGGaggatgtagctgaggttgaggaactgtgaGAGCCTGTCACACCATGCTGATACTGCTGATATTTATACAGGAGGTTTCaggtgttttccagtgtttcctggGGGCAAAGTGATTGGATTcatatttaattgaaaaaaaatgaatttaggtttaggccatgcccactttgaattttaaatctaaatgcagacatttggagcactaaacagacacagacacagatagtgTCATCGTGTTACACCCCTACCGTTTAGTCACAATGTGTACTTACCCCAGACAAACCAGAGCTTGATTCATGTGTATTTACGTGTGATGCATAAATCTTGAGGTGTAACATTACAGTTCCATGTGTAGTTTATTAGAGACACTTGATATAAAGCTAAACAAAATAATCTTCTGTCATTCTACAAcaatcaccatcaccatcactgCTGTTAACGTTTTAACTTCgtctgtttacatttaataaacccactttatgtatgtttttctaCATGACTACATGTAGTATTTCAGTATTAGATCACAGTGTGAGATTTGA
>XM_034309048.1
TGAAAGTTCTGAGAGCGCGAGAGCGGCTGAATGAGGTGGTGTGgatgtagaagtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttcataTCTTTAACGTAAAAGATTTTAGCGTTTCGTCTCGTCGGGAtgggatattaaaaaaaagcaaccgTTCATCGTCCGCACGTGACTACAATGAATCTTTAAAGAGTCACGTTTATCGTTAATGAAGAGATGAAGACCGAGTGATGGGAGAGATCTTTCCTTAGGACGTGAATCTGCGTCAGAGAGCACGCGCGCGCTCTTTCCgttaaatagaaaaagaaacGGCTCTCCCGTATCGcgttggggggaaaaaaagatgacagaAAATGGCGAGAAGGAGAACGAACCGCATCACCGGGACCTACAACGCTCACCGGGTTCCGGTACGATCCGGCCCGAGTCCAAGCTCCAGAAACTGAAGCGCTCACTGTCATTCAAGTCAATGATGCGGAGCAAAAGTGTCGAGAACTTCTTCCAGCGGTCAAATATTGAGACCCTGCCCCCTGACAGTATCATCACTATTGAGGCTCCACCCTCCATCATTGAGTCTCCCTTTTGTGACTGTCCTTTGACCCTTGACAGGTCCCCATCCATAAGTCcaaacctgtctctctcttcacgTTCACCTTCATCAAGCCCATCCCTGTCAGTTAACTCAAatactcctcctcctcagccacGCCCGCAGAAAACACACTGTTTCTTGGAATATGTGTTTCGCCGGCCCACTGTCTGCCAGCAATGCAAGCAAATGATAACAGggAACTCAAAGCAGGGTCTGCGCTGCAAGACATGTAAACTAGCAGCACATCTGTGGTGCTCATCTGAACTTTCACAGCAGGTGTGCAATGGAAAGTCAGGGACGTTCAAGCGGAACTTCAGCTCTCCATTGCTCACTAACGAGCTGTTTACAGTCATTaaggaagccccgcccactcaagaacAGGGAAAAGGCACAGTGGACCCCGTATATGAAGCCTTGCGATACGGAACATCTCTCGCGCAAATGAGCCGATCGACATTCAATAGCATCTCAGAGTCGCCATGTCTTCAGAGTGAAGAAGGACAGGAGAAGTTGGACAGTGAAGCTGTTGCTGTAGAAGAGTGCGTTCCTGAATCTGAGGTGTGTTTGGCTGAGAGTGAGAAGAGTGTGACAGAGGACAAGATCAGTTTACAGccTCCCAGGCGTATTGAGCTTCGCGCCATTCACACCTATGTGGTGTTGTACAAGTTCCTGCCTCAGGAGAAAAACGACCTTGAGCTTCAGCCGGGTGATCGTGTTCAGGTAATCGACGACTCAAACGAGGACTGGTGGAAGGGGAAGAGTCAAGACAAAGTCGGATTTTTCCCTGCTAACTTTGTGCAGCGGGTGCGTCCTGGAGAACGAGTATGGAAGGTCACTCAGGGTTTCCATGGCAACCGCGAGAAAGGTCAAATGACTGTAAAAAGAATCTGCGTTGGGAAATCGGAGGAAACAGATGGATTTTTCAAGCTGACCAGCGGTAAGAAGAGAGGACTCGTACCTTCAAAGTGTGTAGTGGAGATATGAACAACCTCCTCGccatacagacacacaacaaCGGCAGggacacactctcacacaccagCAAGCACCCTGGAATGGAAGTGCACTTGCTTCGCTCACTTCATTTCACACGGCTTTGAGAATGAGACATAAAGGAAGCCATCTGACTGGCCgattctgacctctgacctcagaCACACATGACCAGTGGAACAGTTTTGGTTTGGATGATGGCACTGTAACtgtctggtgtgtgtgcgtgtgtttgtgtgtgtgtgtgagtatgttcACTCAAACATTACAGTAGCAAACAGGATCTGTGTCAAATCATGTGTGTCAGTGAACATCACTGAGAGACAGGAACAGATGCAGTGCAGGAAAAAAGAGACACATGAAGTGATTTTGCATTTACCTGTCCCATCATGCACCACTGAATGAAATGGGAGGGGATTGTAGGAGACCCGTCATGGAGAACACTGGCTAAACATAAAAAGCTGTAAAAGGTGTTGGCTGGCTAAGGGAATGTTATTGAATTAGTTTAGTTAAACCTTAGTTAAAGATGTCCCACGTTATACTGAACAGTCTCTAAtacctgtgtgtttattactgaGTCTATACACACTGTTCCACATTTCTGCACAATCATATGAACCACCTTTATACACTTAAAAAAAGTGAACGCTTCCTGTGTGTTAGAGATGTAACTGACTATGTTATTCGGATTGAATAGACGATATGCTCTAAAGCGATACCTTGAGTCTTCACTTCTAGGTACGGTCATGACTGGaggatgtagctgaggttgaggaactgtgaGAGCCTGTCACACCATGCTGATACTGCTGATATTTATACAGGAGGTTTCaggtgttttccagtgtttcctggGGGCAAAGTGATTGGATTcatatttaattgaaaaaaaatgaatttaggtttaggccatgcccactttgaattttaaatctaaatgcagacatttggagcactaaacagacacagacacagatagtgTCATCGTGTTACACCCCTACCGTTTAGTCACAATGTGTACTTACCCCAGACAAACCAGAGCTTGATTCATGTGTATTTACGTGTGATGCATAAATCTTGAGGTGTAACATTACAGTTCCATGTGTAGTTTATTAGAGACACTTGATATAAAGCTAAACAAAATAATCTTCTGTCATTCTACAAcaatcaccatcaccatcactgCTGTTAACGTTTTAACTTCgtctgtttacatttaataaacccactttatgtatgtttttctaCATGACTACATGTAGTATTTCAGTATTAGATCACAGTGTGAGATTTGA

Function

GO: NA

KEGG:

id description
K23712 STAC2; SH3 and cysteine-rich domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947817.2 True 2886 mRNA 0.45 11 3278909 3321619
XM_026947818.2 False 2628 mRNA 0.46 12 3278909 3321273
XM_034309048.1 False 2882 mRNA 0.45 11 3278909 3321622

Neighbor

gene id symbol gene type direction distance location
LOC113547469 elob,tceb2,LOC102782282,LOC103367351,LOC100692966,LOC103036770,LOC108427344,LOC102795145 coding downstream 36266 3238419 ~ 3242643 (-)
LOC113547516 tgfb1i1,tgfi1 coding downstream 44988 3222430 ~ 3233921 (-)
patl2 patl2 coding downstream 57386 3212858 ~ 3221523 (-)
cmn NA coding downstream 73230 3183070 ~ 3205679 (-)
LOC113547533 paqr4 coding downstream 98441 3176904 ~ 3180468 (-)
med1 med1 coding upstream 8404 3330026 ~ 3352549 (-)
neurod2 neurod2 coding upstream 70922 3392544 ~ 3396358 (-)
LOC113539064 NA coding upstream 326746 3648368 ~ 3651024 (-)
med9 med9 coding upstream 462687 3784309 ~ 3785130 (-)
LOC113539277 nt5m,LOC107719901 coding upstream 494325 3815947 ~ 3830814 (-)
G190100 NA non-coding downstream 103274 3174077 ~ 3175635 (-)
G190099 NA non-coding downstream 104942 3173060 ~ 3173967 (-)
G190097 NA non-coding downstream 107338 3170883 ~ 3171571 (-)
G190094 NA non-coding downstream 122759 3155911 ~ 3156150 (-)
G190076 NA non-coding downstream 201619 3077031 ~ 3077290 (-)
G190188 NA non-coding upstream 27752 3349374 ~ 3349729 (-)
G190232 NA non-coding upstream 105814 3427436 ~ 3427644 (-)
G190304 NA non-coding upstream 175507 3497129 ~ 3497399 (-)
LOC117598465 NA non-coding upstream 214043 3535665 ~ 3536422 (-)
G190336 NA non-coding upstream 293798 3615420 ~ 3632422 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 423416 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 451157 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 467518 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 669136 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1067930 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1590112 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1627541 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1737876 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2163069 5484691 ~ 5490925 (-)
G191430 NA other upstream 2289498 5611120 ~ 5613954 (-)

Expression


Co-expression Network