LOC113547469 (elob,tceb2,LOC102782282,LOC103367351,LOC100692966,LOC103036770,LOC108427344,LOC102795145)


Basic Information

Item Value
gene id LOC113547469
gene name elob,tceb2,LOC102782282,LOC103367351,LOC100692966,LOC103036770,LOC108427344,LOC102795145
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3238419 ~ 3242643 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947822.2
TAAAGCGCTTTTTGGTAACCACGGGGATGCGCGTAAATGACGTCATGTCGCggcggtgcattgtgggattgcgGAGGAGTGGGGCGGTGAATGGTGCAACACAACTTCAGAAATGGACGTGTTTTTAATGATCCGGCGTCATAAGACGACCATCTTCACTGACGCAAAGGAGTCCACGACTGTTTATGAGCTGAAACGCATCGTTGAGGGCATCCTGAAGAGACCACCTGAGGACCAGAGACTTTACAAGgatgATCAACTGCTAGACGATGGTAAAACACTGGGAGATTGTGGCTTCACTAATCAGACGGCCAGACCTCAGGCTCCCGCTACAGTCGGACTCGCCTTCCGAGTTAGTGacgaTGCATTTGAGCAGCTCCAAGTGGATCCGTTCTCGAATCCTCCCGAGCTGCCTGACGTGATGAAGCCTCAGGATTCGGGCAGCACAGCCAATGAGCAGTCGGTGcagtaaaaacacaaagaacacaacacagcaggaggaggagaaatCTGCCGCTCCGTTACAAGGAGGTTCCACCCGGACTGAGCACTCAGAAGGGGTTAGGGGTTTCAGAAACCAAAAACAGGACACAGCCGACCCCCCCGtcctcagcacacacacacacacacacacacacacacacacacacacacacacacacactgaaacatcaTCATCTAGCTTATTAAATTTCCTTGTTAACTCTGGACTGACGCTCATTTCCACCTCACTGtgtctgtgacacacacacatacacacacacacacacacacacactttctttaaaCCTGAACACGGcttgtttttgcagtgtaaagACTTTTATGTCGTTAGTGTTCgttaaaacagaaagaaagcagcTCTTGTGTTTGCAGTAAGAGAGATTGTGATGTTCGAGGGAGACGCATGCGGGAATTACAGCGTATTTTTCACTCGAGTCTGCATCCATAGTGCATTATGTAatttatctttcatttttttgtttgtttatttttttttttttattattatgaattaagCAACCCTTTTAGGCACTGATATTAAAGATCTGAATTTTACATCTGTTATGCTTCCttaatttttcatattgtgtgaatgttatgttttatacattatattagcGGTGATGAGGAAGTACAGTGTATATGTATTAAAAA

Function

symbol description
elob Predicted to enable metal ion binding activity. Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be part of VCB complex and elongin complex. Is expressed in several structures, including axis; mesoderm; notochord; retina; and solid lens vesicle. Orthologous to human ELOB (elongin B).
tceb2 elongin-B

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006414 translational elongation biological_process
GO:0019901 protein kinase binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03873 ELOB, TCEB2; elongin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947822.2 True 1158 mRNA 0.45 4 3238419 3242643

Neighbor

gene id symbol gene type direction distance location
LOC113547516 tgfb1i1,tgfi1 coding downstream 4498 3222430 ~ 3233921 (-)
patl2 patl2 coding downstream 16896 3212858 ~ 3221523 (-)
cmn NA coding downstream 32740 3183070 ~ 3205679 (-)
LOC113547533 paqr4 coding downstream 57951 3176904 ~ 3180468 (-)
ppp1cab ppp1cab,LOC108274218,LOC108413689,LOC105894037,LOC107556769,LOC107674520 coding downstream 70628 3159988 ~ 3167791 (-)
LOC113547465 LOC108274351 coding upstream 36266 3278909 ~ 3321622 (-)
med1 med1 coding upstream 87383 3330026 ~ 3352549 (-)
neurod2 neurod2 coding upstream 149901 3392544 ~ 3396358 (-)
LOC113539064 NA coding upstream 405725 3648368 ~ 3651024 (-)
med9 med9 coding upstream 541666 3784309 ~ 3785130 (-)
G190100 NA non-coding downstream 62784 3174077 ~ 3175635 (-)
G190099 NA non-coding downstream 64452 3173060 ~ 3173967 (-)
G190097 NA non-coding downstream 66848 3170883 ~ 3171571 (-)
G190094 NA non-coding downstream 82269 3155911 ~ 3156150 (-)
G190076 NA non-coding downstream 161129 3077031 ~ 3077290 (-)
G190188 NA non-coding upstream 106731 3349374 ~ 3349729 (-)
G190232 NA non-coding upstream 184793 3427436 ~ 3427644 (-)
G190304 NA non-coding upstream 254486 3497129 ~ 3497399 (-)
LOC117598465 NA non-coding upstream 293022 3535665 ~ 3536422 (-)
G190336 NA non-coding upstream 372777 3615420 ~ 3632422 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 382926 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 410667 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 427028 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 628646 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1027440 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1669091 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1706520 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1816855 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2242048 5484691 ~ 5490925 (-)
G191430 NA other upstream 2368477 5611120 ~ 5613954 (-)

Expression


Co-expression Network