LOC113547471 (LOC108274229)


Basic Information

Item Value
gene id LOC113547471
gene name LOC108274229
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2979306 ~ 2982750 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947824.2
CGGAACGATACAGCGACGCGATGTCAGCGCGCGCGGAGGTGAATAATGCTAGTCGGCCAGATAATCAGGGGCGCGAGCGCGGTTACAGTTTGCGGAAGTGGAAGAGTTTCGTCGTGGAAGCTTCAACAACTCGCAGACGTAAACAATCCCAAATGTTTTGGTGTGACCTTGGTGCGACCCCGTGATGAAGATCCATGGCAAAATCCTGCACCACTACCTGTACAGCGGTGCACCTGATAAAGAGGGATACCTGTACAAAAAGGGGGAAGTGAACACGTCCTACCAGAAACGTTGGTTCTCCCTGAAGGGGAACCTGCTGTTTTATCGGGAACGCAGGAGTGAGCGTGACCTTCTGGGCGTGATCGTGCTGGAGCGCTGCATCGTGCAGCTCTGTGACTCCGAAGAGCTCTTCGCTTTCTCTGTGTCGTTCTACGGCGACGCCGAGGACACAGACAACCTGCGCACGTACAAGTTCTCAGCTGAGGACCAGGCAAGTCAGGAGAGCTGGGTCAAAGCCCTCCACTCGGCCCACCACGGCTACCTTGACCTCCTCGTACAAGATCTGCGCCAGCAATACCTCGAGGCAGCAAGAAACGCCGGAGTCGACCCAGTGGACAACATGTCTGCGAAGGAAAAGATGCGTCATTTTCAGAAGCCTCACAAGTGCCCAGGCTCAAACTCGGTCTTTTACACACCGAACGAAAACCACAAGCTACAAGCCCTGCCCACTGGCTGCAAGCAAGCCAACAAACGCTCCCCTAAACTTTGGCCCAAGCGCCACACTCTCGGGCCGGCACCATGTGTTACGGAGTGGGTGGAGCCAGCGGAACCTATGCAGGACTTCTGCCAATTGCACGAGTACTTtggacaggaagtgaggcaacTGGTGGCCGAGTGGCAGAAGAAGAGACGGGAAAAGACTGCGCAGGCTGAAGAAAATCTGATCGActtggggtaaaaaaaaaaaaaaaaaaa
>XM_026947826.2
TACAGCGACGCGATGTCAGCGCGCGCGGAGGTGAATAATGCTAGTCGGCCAGATAATCAGGGGCGCGAGCGCGGTTACAGTTTGCGGAAGTGGAAGAGTTTCGTCGTGGAAGCTTCAACAACTCGACGTAAACAATCCCAAATGTTTTGGTGTGACCTTGGTGCGACCCCGTGATGAAGATCCATGGCAAAATCCTGCACCACTACCTGTACAGCGGTGCACCTGATAAAGAGGGATACCTGTACAAAAAGGGGGAAGTGAACACGTCCTACCAGAAACGTTGGTTCTCCCTGAAGGGGAACCTGCTGTTTTATCGGGAACGCAGGAGTGAGCGTGACCTTCTGGGCGTGATCGTGCTGGAGCGCTGCATCGTGCAGCTCTGTGACTCCGAAGAGCTCTTCGCTTTCTCTGTGTCGTTCTACGGCGACGCCGAGGACACAGACAACCTGCGCACGTACAAGTTCTCAGCTGAGGACCAGGCAAGTCAGGAGAGCTGGGTCAAAGCCCTCCACTCGGCCCACCACGGCTACCTTGACCTCCTCGTACAAGATCTGCGCCAGCAATACCTCGAGGCAGCAAGAAACGCCGGAGTCGACCCAGTGGACAACATGTCTGCGAAGGAAAAGATGCGTCATTTTCAGAAGCCTCACAAGTGCCCAGGCTCAAACTCGGTCTTTTACACACCGAACGAAAACCACAAGCTACAAGCCCTGCCCACTGGCTGCAAGCAAGCCAACAAACGCTCCCCTAAACTTTGGCCCAAGCGCCACACTCTCGGGCCGGCACCATGTGTTACGGAGTGGGTGGAGCCAGCGGAACCTATGCAGGACTTCTGCCAATTGCACGAGTACTTtggacaggaagtgaggcaacTGGTGGCCGAGTGGCAGAAGAAGAGACGGGAAAAGACTGCGCAGGCTGAAGAAAATCTGATCGActtggggtaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947824.2 True 975 mRNA 0.54 4 2979306 2982750
XM_026947826.2 False 964 mRNA 0.54 4 2979306 2982742

Neighbor

gene id symbol gene type direction distance location
mylpfb mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 coding downstream 4162 2971330 ~ 2975144 (-)
pgap3 pgap3,LOC103358570 coding downstream 11577 2957439 ~ 2967729 (-)
erbb2 erbb2,LOC108273851 coding downstream 26402 2924595 ~ 2952904 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding downstream 82958 2874516 ~ 2896348 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding downstream 114317 2856236 ~ 2864989 (-)
LOC113547497 LOC108274228 coding upstream 2908 2985658 ~ 2989177 (-)
LOC113547499 LOC108274363 coding upstream 14216 2996966 ~ 2998281 (-)
LOC113547498 LOC108274359,LOC108274358,LOC108274122 coding upstream 25515 3008265 ~ 3020759 (-)
LOC113547488 doc2a,LOC108274005,LOC108411015,LOC102798681 coding upstream 50298 3033048 ~ 3068141 (-)
LOC113547508 LOC108274004 coding upstream 124435 3107185 ~ 3118064 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding downstream 68051 2911012 ~ 2911255 (-)
G189882 NA non-coding downstream 151499 2796507 ~ 2827807 (-)
G189885 NA non-coding downstream 176342 2792827 ~ 2802964 (-)
G189855 NA non-coding downstream 277886 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 323799 2655303 ~ 2655507 (-)
G190076 NA non-coding upstream 94281 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 173161 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 188133 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 190310 3173060 ~ 3173967 (-)
G190100 NA non-coding upstream 191327 3174077 ~ 3175635 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 123813 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 151554 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 167915 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 369533 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 768327 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1928984 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1966413 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 2076748 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2501941 5484691 ~ 5490925 (-)
G191430 NA other upstream 2628370 5611120 ~ 5613954 (-)

Expression


Co-expression Network