LOC113547477 (adprh,LOC108274007,LOC108411014,LOC108411010)


Basic Information

Item Value
gene id LOC113547477
gene name adprh,LOC108274007,LOC108411014,LOC108411010
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3077093 ~ 3082950 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947841.2
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgagagagagctgaCTTCCTGAAATCACTCCAGGACTTCAAACTGTGACTAAAACACTTAATCATCTGATTTAAAGTCTGTGAGGAAAAGACAAAGAACTCAACCAGAGGTGGAAAAGAGTCCTAAACATGGAGAGTCCTGTGACTGTCGATCACTACAAGGCCGGCATGGTGCTGAGCGGTGTGGGGGACGCTCTCGGCTACCGGTGGGAGTTTAATTATTCTGGACCAAATATCCATCAGGAAGTTCAGAAGCTTGGAGGAGTGAAGAACATCTCTGTTAGGCTTCCTCATTGGCCAGTCAGCGATGACACAGTGCTTCACTTGGCGACTGCTGAAGCTTTAACCACAGGTAAGGAAGGTGAGGAGCTGCTGCATGAGGTGGCTTCCCGTTACATAAAGGGTATGAAGGATATGTCTGGGAGGGCTCCAGGAGCGATGACCAtccatgGTGTGAATCAGTTAAAGCCAGGAGCTCCTGGAGGCTACAGAATAGCTTACGACCAAACAAGTGGAGGATGTGGTGCTGCCATGAGGGCTATGTGCATCGGCCTGAGATACCCTCGACCAGAGCAGCTCTCCTCACTGGTCGCAGTTGCCGTGGAGACTGGAAGAATGACCCACCCTCATCCAACCGGATTCCTCGGGGGCGTGGCTTCTGCTCTGTTTGCATCCTACGCCATCCAGCGCCGTCCAATCACGACCTGGGGGCTGGGCTTAGTGAAGGAGGCTTGTCCAATAGCAAAGGAGTTTGTGAGGTCAGCAGGATACGCCGTTCACGAGACGGAGAGAGACTGGGGTTACTTTACTGAAAAATGGGAATGGTATCTTGAGTTGAGGGGTTTGTCATTAGGAAGTGGTCCAGTGGTCTTTCCTGAGCTATACGGACCTGTTGAACGTGACGAGGCATACAAAAGCTTCAGCTGGTCTGGATGGGGGGGCAGCAGTGGTCACGATGCACCAATGATAGCTCTGGATGCCCTCCTGGGGGCGGGGTCAAACTGGGAGGAGCTAATGAACAGGGCAGGATTCCACGGAGGAGACAGCGACAGCACGGCGGTCATAGCCTGCTGCTGTTGGGGTCTGATGTACGGGATGGAGGGAGTGCCCGAGTGTAACTACACCTACCTGGAGTACAAGGACCGCCTGGAGAAGAGTGCTAAGAAACTTTATGCACTATCACACTGAATTCCCCTTGTGGTCCTCAATCTGGATTTTTAAGTACACTATTAGACCTTAAGTTTCACTCTTGTACCTTAAATTAGCTTTTAAAGTAATACATTAAGGATGTACTACATACATCTTTCCAGGTAAAACATACTTACACACTAAAGGTATAAAAGATACACTTGAggataaaattaataaaaataatatatatatatatatatatatataaatactatagaaatatatacagaatgtaTTTTGCAACTAATTATTGTTTAaaactctgttcaatatcaatCATGTAAACGAACATAATGGTTGTCATGACACATGCTTCCGAGTCATAATTAAAACTAGAAACTTGACTTTTATTAGAAATTATCCACACAGA

Function

symbol description
adprh Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to act upstream of or within protein de-ADP-ribosylation. Is expressed in several structures, including adaxial cell; lens; liver; musculature system; and notochord. Orthologous to human ADPRH (ADP-ribosylarginine hydrolase).

GO:

id name namespace
GO:0051725 protein de-ADP-ribosylation biological_process
GO:0003875 ADP-ribosylarginine hydrolase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01245 ADPRH; ADP-ribosylarginine hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947841.2 True 1622 mRNA 0.47 8 3077093 3082950

Neighbor

gene id symbol gene type direction distance location
LOC113547478 LOC108273849,LOC108443156 coding upstream 153745 2906154 ~ 2923348 (+)
LOC113547481 LOC108273850,LOC107735415 coding upstream 171067 2898889 ~ 2906026 (+)
ngfrb LOC108273578 coding upstream 379846 2656860 ~ 2697247 (+)
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 502319 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 561839 2503394 ~ 2515254 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 11054 3094004 ~ 3099985 (+)
mto1 mto1 coding downstream 17254 3100204 ~ 3107200 (+)
LOC113547522 LOC108274006 coding downstream 35544 3118494 ~ 3126524 (+)
sult1st6 LOC108274122,LOC108274358,LOC108274359,LOC108411008 coding downstream 46766 3129716 ~ 3136166 (+)
pelo pelo,LOC107653258,LOC107674509 coding downstream 86718 3169668 ~ 3175652 (+)
G189978 LOC107739129,LOC107675819,LOC107589765,LOC107719741 non-coding upstream 48732 3028130 ~ 3028361 (+)
G189970 NA non-coding upstream 81710 2993000 ~ 2995383 (+)
G189960 NA non-coding upstream 107005 2969072 ~ 2970088 (+)
G189959 NA non-coding upstream 109482 2966963 ~ 2967611 (+)
G189954 NA non-coding upstream 117041 2959851 ~ 2960052 (+)
G190027 NA non-coding downstream 138987 3221937 ~ 3222309 (+)
G190033 NA non-coding downstream 151439 3234389 ~ 3234610 (+)
G190122 NA non-coding downstream 182551 3265501 ~ 3265710 (+)
G190160 NA non-coding downstream 269708 3352658 ~ 3352920 (+)
G190170 NA non-coding downstream 284144 3367094 ~ 3367293 (+)
LOC113547538 NA other upstream 55484 2970125 ~ 3021609 (+)
G189864 NA other upstream 316083 2760693 ~ 2761010 (+)
pyyb NA other upstream 548273 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 1124869 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 1411280 1567516 ~ 1665813 (+)
G190028 NA other downstream 155494 3238444 ~ 3239216 (+)
G190212 NA other downstream 318317 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 347363 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 614844 3697794 ~ 3723243 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other downstream 698211 3781161 ~ 3783609 (+)

Expression


Co-expression Network