LOC113547481 (LOC108273850,LOC107735415)


Basic Information

Item Value
gene id LOC113547481
gene name LOC108273850,LOC107735415
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2898889 ~ 2906026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947846.2
CTGTATATTACCtcagatattttcacttgtgcTGATTATTTCATTAAGAGTGACAATAGTTTTAAAAAGACGGGATGGAGGGGCCTGTATTTTGACAAGCCTAGACGAAACGGAAATGACGTAGTGTGTCGCTATAGACAGGGCTCGGGTTGGATGGTCCTTCATAATATCCGTGAGGTTTAATATTCTCGGTGGGAAATGTAGCGCGATTATTTCGGCAATGGCAGCCGGAGCGGTGTTACGTCCTTTTCTTTCCGGCTGCGCTCCTAAACTGTCGAAGGTTCCGCGGCTGAGCGCGCTCCCGGTCTGCGTCAGGACGGTGCACGTGTGTCCGGTTTTGCGCGCGGGCCACAACAAATGGTCCAAAGTGAAAGACATCAAGATCCCGAAAGATGCAGCTCGAGCGCGGATGATCGCCAAATACGCGATGCTGATCAGGGTGGCGGTGAGAGagggaGGACCAAACCCGGAGTATAATGTCACTTTGGCTCAGCTTATAGAGCAGTGCAGAAATAAAAGTCTACCCAAAGCCACCATCGAGGCTGCTATTAAAGGAGCGGAAAAGTCAAAAGCTGGCGCTCAGTACCTATACGAGGCGCGAGGGCCCGGAGGTTCCATGCTGCTCATCGAGGTTCTGACAGACAACAGCACACGCTCACACCAAGCCATCAAACACATCTTAATGAAAAATGGGGGGGCGATGTGTGAAGGCGCCCGGCATCATTTCGAGAGAAAAGGCGTCATCGTGGCGGCCCAAGACCAAGTTTCTACTGAAAGAGCTCTGGAGCTGGCGATAGAATCGGGAGCTGAAGACGTGCACGAAACCGAGGACGAGGAGGAGAAACCGATTTTACAGTTCATCTGTGATATGAACTCGATAAAAGCAGTGCGGACAGCGCTGGAAGCTCTCGGGGTTCACACCCTGTCAGCGGGGATGGAGTACATCTCCAACACTCCTGCTGCTCTACCACAGGACCAGCTGGACTCCAGCGCCACCCTGCTCGAAGCTCTCAATGATTACCCAGATGTGGTCAGAGTGTGGGACAACATTCAGGCACTGGAGTAAGACAGGAAAGAAGAGGAGGCTGAATGTTTCATGAGATACAAGTGAAGGACTGAAGCTTGATGAGTGCGAGAAAGGTCTACGTCAGTGATTTCCTCAATAtcttatataaaatgtgtgtatttgtgcaaaCTCGCAAATTGTGTTCAtaataaagatatatttataatttaaaaaattca

Function

GO: NA

KEGG:

id description
K18189 TACO1; translational activator of cytochrome c oxidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947846.2 True 1245 mRNA 0.49 6 2898889 2906026

Neighbor

gene id symbol gene type direction distance location
ngfrb LOC108273578 coding upstream 201642 2656860 ~ 2697247 (+)
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 324115 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 383635 2503394 ~ 2515254 (+)
mki67 NA coding upstream 396059 2489809 ~ 2502830 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding upstream 412093 2394076 ~ 2486796 (+)
LOC113547478 LOC108273849,LOC108443156 coding downstream 128 2906154 ~ 2923348 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 171067 3077093 ~ 3082950 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 187978 3094004 ~ 3099985 (+)
mto1 mto1 coding downstream 194178 3100204 ~ 3107200 (+)
LOC113547522 LOC108274006 coding downstream 212468 3118494 ~ 3126524 (+)
G189916 NA non-coding upstream 23592 2874155 ~ 2875297 (+)
LOC113547470 NA non-coding upstream 254705 2641841 ~ 2644184 (+)
G189684 NA non-coding upstream 283134 2614697 ~ 2615755 (+)
G189626 NA non-coding upstream 289392 2591238 ~ 2609497 (+)
G189678 NA non-coding upstream 290811 2605883 ~ 2608078 (+)
G189933 NA non-coding downstream 19188 2925214 ~ 2925571 (+)
G189934 LOC108273851 non-coding downstream 21775 2927801 ~ 2928169 (+)
G189940 NA non-coding downstream 24907 2930933 ~ 2931380 (+)
G189941 NA non-coding downstream 28329 2934355 ~ 2935400 (+)
G189946 NA non-coding downstream 35204 2941230 ~ 2941830 (+)
G189864 NA other upstream 137879 2760693 ~ 2761010 (+)
pyyb NA other upstream 370069 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 946665 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 1233076 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1924671 957532 ~ 974218 (+)
LOC113547538 NA other downstream 64099 2970125 ~ 3021609 (+)
G190028 NA other downstream 332418 3238444 ~ 3239216 (+)
G190212 NA other downstream 495241 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 524287 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 791768 3697794 ~ 3723243 (+)

Expression


Co-expression Network