LOC113547489


Basic Information

Item Value
gene id LOC113547489
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2194344 ~ 2210979 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947855.2
ATTTAGAGTTTCAGAGATGCTCTGATCTGGAACACTGCACAGAGCTGcagcacacacaaaacactcgATAAGCTGACaaaagtgtgagagagatattGATGTACATCTTTACTGTGTTGTGGAATTTCTGCTCCTGATGGATTTACCACTGCTGCTGTGCCTTCAGGTCGCGCTGCTCTTTATGAGTGGGGTGGCAAATGCAGAAGATTCAACTACATCCATGTTTCCTGTTGACTCCAGTGccgaaaaatgtacatttccaAACAGTACAAGCATCTGTCTTATTCCGCTCCAAACCCCATTCATGCATGATGGAGACATGCAGAAGACAGCATATGTCAGCTACAATGGTTTCCTGGCATTTGACCAACCAGTGGATAACAACCTCAATCCCAGTCTAGAAGGTTACAGAAACATCATCTTTCCGGCTTTGTACCCCATCTTCAGCTTAAACATGAGAAATGTCACCTTCATGCAAGCCACAGATGGCCCTCTTGTAACATTAGCTACAAAGGAAATTAATGCCATGTTCCCTGAGTACCCCAGCTTTGTAGCTACATGGGTCTTAGTGGTCACTTGGCAAGATATGTCAAACCCTGAATAtACGGATACAGTACAAGTTGTGTTGACCTCTAATGGTGTAGAGCACACTTTCATCCTGATGAACATTCAGAGTTTCATAAGTTTCATGGCCTTGGTTGGCTTTGCAAAGAACAGTTTCAGAAATTTGGGGATAATCCAGTGGACTCCTTCTTATCTGTTGTTTACTGAATCTAATCGCTGGGCTTACGAAGTTCAGAAGGGACCGTCTGAGCTTAGACGTCCTGTCGGGACTTTTCCATTAAGGAAACCAGACGTTCTGAATCCTGGTGTAAATGCCATTGAAGTGAAACTGCAAAAGCCGTTTAAATACTTTGGAAAATACTTTGACACAATATATGTAAATGAGAATGGAGCTCTGAGTTTCTCTGTTCCACTCCCTGACTCACTGACTCCTGTTGTAAATGCTGACATTAACATCATCGCTCCGCTGTGGACCGACCTTAAGGCTGATCTCCCAAGTATCTACTACGGAGAAACCAAAGATTCCATACTGCTAGACAGtgtagcttttatttttagatatctGTTTGCTGAATTAAACTTCATCCCTTCCTGGTCCTTCACAGCCACCTGGAACAACATATCCTACATCAATGGAACAGGGAGGGCCACTTTTCAAGCAGTTTTGGTCTCTGATAATGAAAGCACCTCATTGGTGGTGATGTCCTATATCTCTGTTGACCCTATTAATGGCCCCTGGCTGgctggCTATCAAGCACTAGATCCGATCTTTAGTTATAAGCTGCCAATAAATGACATCTCTGAGCTGGCTCGAAGCAACACATCATTAGGTTGGTGGATTTACCGCGTTGACGATGAACTCCCAGCCCTCTGTGAACATTTGATGTGCACTGAAAATGAGGTCTGTGAAAGGAGAGAGTCAGGTATCGGCTGCTACTCTGTGAACAAGACCAACCCTGACACCgttgCCCTCTGTGAACATTTGATGTGCACTGAAAATGAGGTCTGTGAAAGCAGAGAGTTAGGTATCGGCTGCTACTGTGTGAACAAGACCAACCCTGACAACTTTGatgCCATTGAGGCATGTACAGACAGTAGTGggtcagtgtctctctctcgctgtcagCTGTTTGAAGCTGGATATTCTGTAGAAGAGCTTCACCTCAAGGACCCCAACTGTACAGGCGTAGTCGAAGATGGCAGGCTGGTGTTCAGATTTGACAGTGATGCAAAACTCTGTGGTGGTAATCTAGAGAGTAACACCACACATCTAATCTACAACAATGCAGTCAGGACACTTTCAAAATTGATCAGCCACAACAGTAGGCTTAATATCTCCATTTCCTGTGTGTATCCTCTCATCCTGAATCTCTCCATGCCCATGGCCTTACAAGCTGAAGGAAGTGTGATTGACAAGGAGGTACCTGCTGTTGAGGGCACGTATCAGAGCCACATGCTTGTCTATCCCAATAATTCCTTTACAGAGCCTTACTCTGGCAATGTGACCATTGCTCTGAACCAGAAGATCTATGTGGCTGTGAAAGTGGCAGGATTTAATAGTGATCATATTGCCACTGTTCTGGACAGTTGCTGGGCCACGCCAAATATGGACTCCAACTCCGACATCTGCTGGTACCTGATTGTTAAAGGGTGTCCTAACCCCGATGATGGTACAGTGGAGGTGCTGGAGAACGGCATCTCTACATCCAGCTACTTCTACTTCAGGatgttctctttctctgctcttGGTGATAGCATCTTCCTTCACTGTCAGGTCCACCTATGCCTGCTGGATAGTGGTAACTGTGAAATGCGATGTGATTGAAACAGAGGATGCCAGGAACTAGAGGGGTGATACAGCTATTCCATGATCATGGGCTTCTGATTTGCTTATTCGTACTTGTACAATTTTTGTAAGAGGGCTCTGAAAAAGTatcatttttctgtcttctgtTTAATGAAAGTGTTGTGGGGACTTAAAAAAATTaccatttctattttttcatCAAAATTATACTATAATAATCACAACCAATGATCAAAAACTatcataaaaatagaatttgttattttttaaaatctttttttttctctgatccTTGGAAATTTTGTGTGATTGTACTCTCCTGCAGTATCTTATTATTGCTAAATATCAGTGAAACTGGATCAGTCTTAAGTTGTGTCCAAATATTACATAATCTAGTTCTCTACTTCTGTTCTAATAATAAAGACTATGATGCTCACA
>XM_034309386.1
TGGAACACTGCACAGAGCTGcagcacacacaaaacactcgATAAGCTGGTGGGGTGGCAAATGCAGAAGATTCAACTACATCCATGTTTCCTGTTGACTCCAGTGccgaaaaatgtacatttccaAACAGTACAAGCATCTGTCTTATTCCGCTCCAAACCCCATTCATGCATGATGGAGACATGCAGAAGACAGCATATGTCAGCTACAATGGTTTCCTGGCATTTGACCAACCAGTGGATAACAACCTCAATCCCAGTCTAGAAGGTTACAGAAACATCATCTTTCCGGCTTTGTACCCCATCTTCAGCTTAAACATGAGAAATGTCACCTTCATGCAAGCCACAGATGGCCCTCTTGTAACATTAGCTACAAAGGAAATTAATGCCATGTTCCCTGAGTACCCCAGCTTTGTAGCTACATGGGTCTTAGTGGTCACTTGGCAAGATATGTCAAACCCTGAATAtACGGATACAGTACAAGTTGTGTTGACCTCTAATGGTGTAGAGCACACTTTCATCCTGATGAACATTCAGAGTTTCATAAGTTTCATGGCCTTGGTTGGCTTTGCAAAGAACAGTTTCAGAAATTTGGGGATAATCCAGTGGACTCCTTCTTATCTGTTGTTTACTGAATCTAATCGCTGGGCTTACGAAGTTCAGAAGGGACCGTCTGAGCTTAGACGTCCTGTCGGGACTTTTCCATTAAGGAAACCAGACGTTCTGAATCCTGGTGTAAATGCCATTGAAGTGAAACTGCAAAAGCCGTTTAAATACTTTGGAAAATACTTTGACACAATATATGTAAATGAGAATGGAGCTCTGAGTTTCTCTGTTCCACTCCCTGACTCACTGACTCCTGTTGTAAATGCTGACATTAACATCATCGCTCCGCTGTGGACCGACCTTAAGGCTGATCTCCCAAGTATCTACTACGGAGAAACCAAAGATTCCATACTGCTAGACAGtgtagcttttatttttagatatctGTTTGCTGAATTAAACTTCATCCCTTCCTGGTCCTTCACAGCCACCTGGAACAACATATCCTACATCAATGGAACAGGGAGGGCCACTTTTCAAGCAGTTTTGGTCTCTGATAATGAAAGCACCTCATTGGTGGTGATGTCCTATATCTCTGTTGACCCTATTAATGGCCCCTGGCTGgctggCTATCAAGCACTAGATCCGATCTTTAGTTATAAGCTGCCAATAAATGACATCTCTGAGCTGGCTCGAAGCAACACATCATTAGGTTGGTGGATTTACCGCGTTGACGATGAACTCCCAGCCCTCTGTGAACATTTGATGTGCACTGAAAATGAGGTCTGTGAAAGGAGAGAGTCAGGTATCGGCTGCTACTCTGTGAACAAGACCAACCCTGACACCgttgCCCTCTGTGAACATTTGATGTGCACTGAAAATGAGGTCTGTGAAAGCAGAGAGTTAGGTATCGGCTGCTACTGTGTGAACAAGACCAACCCTGACAACTTTGatgCCATTGAGGCATGTACAGACAGTAGTGggtcagtgtctctctctcgctgtcagCTGTTTGAAGCTGGATATTCTGTAGAAGAGCTTCACCTCAAGGACCCCAACTGTACAGGCGTAGTCGAAGATGGCAGGCTGGTGTTCAGATTTGACAGTGATGCAAAACTCTGTGGTGGTAATCTAGAGAGTAACACCACACATCTAATCTACAACAATGCAGTCAGGACACTTTCAAAATTGATCAGCCACAACAGTAGGCTTAATATCTCCATTTCCTGTGTGTATCCTCTCATCCTGAATCTCTCCATGCCCATGGCCTTACAAGCTGAAGGAAGTGTGATTGACAAGGAGGTACCTGCTGTTGAGGGCACGTATCAGAGCCACATGCTTGTCTATCCCAATAATTCCTTTACAGAGCCTTACTCTGGCAATGTGACCATTGCTCTGAACCAGAAGATCTATGTGGCTGTGAAAGTGGCAGGATTTAATAGTGATCATATTGCCACTGTTCTGGACAGTTGCTGGGCCACGCCAAATATGGACTCCAACTCCGACATCTGCTGGTACCTGATTGTTAAAGGGTGTCCTAACCCCGATGATGGTACAGTGGAGGTGCTGGAGAACGGCATCTCTACATCCAGCTACTTCTACTTCAGGatgttctctttctctgctcttGGTGATAGCATCTTCCTTCACTGTCAGGTCCACCTATGCCTGCTGGATAGTGGTAACTGTGAAATGCGATGTGATTGAAACAGAGGATGCCAGGAACTAGAGGGGTGATACAGCTATTCCATGATCATGGGCTTCTGATTTGCTTATTCGTACTTGTACAATTTTTGTAAGAGGGCTCTGAAAAAGTatcatttttctgtcttctgtTTAATGAAAGTGTTGTGGGGACTTAAAAAAATTaccatttctattttttcatCAAAATTATACTATAATAATCACAACCAATGATCAAAAACTatcataaaaatagaatttgttattttttaaaatctttttttttctctgatccTTGGAAATTTTGTGTGATTGTACTCTCCTGCAGTATCTTATTATTGCTAAATATCAGTGAAACTGGATCAGTCTTAAGTTGTGTCCAAATATTACATAATCTAGTTCTCTACTTCTGTTCTAATAATAAAGACTATGATGCTCACA
>XR_003404831.2
ATTTAGAGTTTCAGAGATGCTCTGATCTGGAACACTGCACAGAGCTGcagcacacacaaaacactcgATAAGCTGACaaaagtgtgagagagatattGATGTACATCTTTACTGTGTTGTGGAATTTCTGCTCCTGATGGATTTACCACTGCTGCTGTGCCTTCAGGTCGCGCTGCTCTTTATGAGTGGGGTGGCAAATGCAGAAGATTCAACTACATCCATGTTTCCTGTTGACTCCAGTGccgaaaaatgtacatttccaAACAGTACAAGCATCTGTCTTATTCCGCTCCAAACCCCATTCATGCATGATGGAGACATGCAGAAGACAGCATATGTCAGCTACAATGGTTTCCTGGCATTTGACCAACCAGTGGATAACAACCTCAATCCCAGTCTAGAAGGTTACAGAAACATCATCTTTCCGGCTTTGTACCCCATCTTCAGCTTAAACATGAGAAATGTCACCTTCATGCAAGCCACAGATGGCCCTCTTGTAACATTAGCTACAAAGGAAATTAATGCCATGTTCCCTGAGTACCCCAGCTTTGTAGCTACATGGGTCTTAGTGGTCACTTGGCAAGATATGTCAAACCCTGAATAtACGGATACAGTACAAGTTGTGTTGACCTCTAATGGTGTAGAGCACACTTTCATCCTGATGAACATTCAGAGTTTCATAAGTTTCATGGCCTTGGTTGGCTTTGCAAAGAACAGTTTCAGAAATTTGGGGATAATCCAGTGGACTCCTTCTTATCTGTTGTTTACTGAATCTAATCGCTGGGCTTACGAAGTTCAGAAGGGACCGTCTGAGCTTAGACGTCCTGTCGGGACTTTTCCATTAAGGAAACCAGACGTTCTGAATCCTGGTGTAAATGCCATTGAAGTGAAACTGCAAAAGCCGTTTAAATACTTTGGAAAATACTTTGACACAATATATGTAAATGAGAATGGAGCTCTGAGTTTCTCTGTTCCACTCCCTGACTCACTGACTCCTGTTGTAAATGCTGACATTAACATCATCGCTCCGCTGTGGACCGACCTTAAGGCTGATCTCCCAAGTATCTACTACGGAGAAACCAAAGATTCCATACTGCTAGACAGtgtagcttttatttttagatatctGTTTGCTGAATTAAACTTCATCCCTTCCTGGTCCTTCACAGCCACCTGGAACAACATATCCTACATCAATGGAACAGGGAGGGCCACTTTTCAAGCAGTTTTGGTCTCTGATAATGAAAGCACCTCATTGGTGGTGATGTCCTATATCTCTGTTGACCCTATTAATGGCCCCTGGCTGgctggCTATCAAGCACTAGATCCGATCTTTAGTTATAAGCTGCCAATAAATGACATCTCTGAGCTGGCTCGAAGCAACACATCATTAGGTTGGTGGATTTACCGCGTTGACGATGAACTCCCAGCCCTCTGTGAACATTTGATGTGCACTGAAAATGAGGTCTGTGAAAGGAGAGAGTCAGGTATCGGCTGCTACTCTGTGAACAAGACCAACCCTGACACCgttgCCCTCTGTGAACATTTGATGTGCACTGAAAATGAGGTCTGTGAAAGCAGAGAGTTAGGTATCGGCTGCTACTGTGTGAACAAGACCAACCCTGACAACTTTGatgCCATTGAGGCATGTACAGACAGTAGTGggtcagtgtctctctctcgctgtcagCTGTTTGAAGCTGGATATTCTGTAGAAGAGCTTCACCTCAAGGACCCCAACTGTACAGGCGTAGTCGAAGATGGCAGGCTGGTGTTCAGATTTGACAGTGATGCAAAACTCTGTGGTGGTAATCTAGAGAGTAACACCACACATCTAATCTACAACAATGCAGTCAGGACACTTTCAAAATTGATCAGCCACAACAGTAGGCTTAATATCTCCATTTCCTGTGTGTATCCTCTCATCCTGAATCTCTCCATGCCCATGGCCTTACAAGCTGAAGGAAGTGTGATTGACAAGGAGGTACCTGCTGTTGAGGGCACGTATCAGAGCCACATGCTTGTCTATCCCAATAATTCCTTTACAGAGCCTTACTCTGGCAATGTGACCATTGCTCTGAACCAGAAGATCTATGTGGCTGTGAAAGTGGCAGGATTTAATAGTGATCATATTGCCACTGTTCTGGACAGTTGCTGGGCCACGCCAAATATGGACTCCAACTCCGACATCTGCTGGTACCTGATTGTTAAAGGAATTGGTGATATTTACTGGAATCCTTTCTCCCATCTACCCATATAATGTTTCGTGTATCACTGACTGCTACACAACCCCAAAGGATAATGGAGCCACCCCCAGGCTTAACAGTTGGCAAGGTGTCCTAACCCCGATGATGGTACAGTGGAGGTGCTGGAGAACGGCATCTCTACATCCAGCTACTTCTACTTCAGGatgttctctttctctgctcttGGTGATAGCATCTTCCTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947855.2 True 2809 mRNA 0.43 18 2194344 2210979
XM_034309386.1 False 2672 mRNA 0.43 17 2194344 2210952
XR_003404831.2 False 2452 misc_RNA 0.45 18 2194987 2210979

Neighbor

gene id symbol gene type direction distance location
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding downstream 22653 2166426 ~ 2171691 (-)
LOC113534974 LOC108273474 coding downstream 62102 2124735 ~ 2132242 (-)
buc2l LOC108273451 coding downstream 71072 2119202 ~ 2123272 (-)
LOC113535332 LOC108274177 coding downstream 115377 2052784 ~ 2078967 (-)
kcnh4b LOC108273803,LOC103352817 coding downstream 211467 1941696 ~ 1982877 (-)
emc9 emc9 coding upstream 4422 2215401 ~ 2224300 (-)
LOC117598663 NA coding upstream 32896 2243875 ~ 2245715 (-)
LOC117598634 NA coding upstream 34815 2245794 ~ 2269055 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding upstream 97262 2308241 ~ 2334652 (-)
samd14 NA coding upstream 124654 2335633 ~ 2345673 (-)
G189521 NA non-coding downstream 31773 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 47429 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 133079 2048830 ~ 2061265 (-)
G189412 NA non-coding downstream 204189 1989519 ~ 1990155 (-)
G189411 NA non-coding downstream 206113 1987335 ~ 1988231 (-)
G189547 NA non-coding upstream 69567 2280546 ~ 2280753 (-)
G189702 NA non-coding upstream 183047 2394026 ~ 2399476 (-)
G189717 NA non-coding upstream 392214 2603193 ~ 2604096 (-)
G189810 NA non-coding upstream 444324 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 483801 2694780 ~ 2701420 (-)
ppp1r16a ppp1r16a other downstream 324351 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 420824 1760834 ~ 1773520 (-)
G189199 NA other downstream 623271 1568286 ~ 1571073 (-)
G189180 NA other downstream 629084 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 1359584 748738 ~ 834760 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 380258 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 575102 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 582067 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 641076 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2700755 4911734 ~ 4918977 (-)

Expression


Co-expression Network