Gene
RNA
| Item | Value |
|---|---|
| gene id | erbb2 |
| gene name | erbb2,LOC108273851 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 2924595 ~ 2952904 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| erbb2 | Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within animal organ development; fin regeneration; and nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior segment eye; cranial ganglion; fin; heart; and primary neurons. Human ortholog(s) of this gene implicated in carcinoma (multiple); dilated cardiomyopathy; high grade glioma; prostate cancer; and urinary bladder cancer. Orthologous to human ERBB2 (erb-b2 receptor tyrosine kinase 2). |
| description |
|---|
| receptor tyrosine-protein kinase erbB-2 |
| id | name | namespace |
|---|---|---|
| GO:0032285 | non-myelinated axon ensheathment | biological_process |
| GO:0060347 | heart trabecula formation | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0060973 | cell migration involved in heart development | biological_process |
| GO:0001837 | epithelial to mesenchymal transition | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0014044 | Schwann cell development | biological_process |
| GO:0048914 | myelination of anterior lateral line nerve axons | biological_process |
| GO:0048919 | posterior lateral line neuromast development | biological_process |
| GO:0048932 | myelination of posterior lateral line nerve axons | biological_process |
| GO:0007413 | axonal fasciculation | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004714 | transmembrane receptor protein tyrosine kinase activity | molecular_function |
| GO:0004716 | obsolete signal transducer, downstream of receptor, with protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| K05083 | ERBB2, HER2, CD340; receptor tyrosine-protein kinase erbB-2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026947856.2 | True | 6656 | mRNA | 0.47 | 27 | 2924595 | 2952904 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pth3r | LOC108273556,LOC108443164,LOC103358568,LOC102199980 | coding | downstream | 28247 | 2874516 ~ 2896348 (-) |
| rundc3ab | rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 | coding | downstream | 59606 | 2856236 ~ 2864989 (-) |
| LOC113547505 | NA | coding | downstream | 179200 | 2732216 ~ 2745395 (-) |
| slc4a1b | LOC108273570,LOC108410807 | coding | downstream | 286322 | 2618389 ~ 2638273 (-) |
| si:dkeyp-118b1.2 | si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 | coding | downstream | 308829 | 2606033 ~ 2615766 (-) |
| pgap3 | pgap3,LOC103358570 | coding | upstream | 4535 | 2957439 ~ 2967729 (-) |
| mylpfb | mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 | coding | upstream | 18426 | 2971330 ~ 2975144 (-) |
| LOC113547471 | LOC108274229 | coding | upstream | 26402 | 2979306 ~ 2982750 (-) |
| LOC113547497 | LOC108274228 | coding | upstream | 32754 | 2985658 ~ 2989177 (-) |
| LOC113547499 | LOC108274363 | coding | upstream | 44062 | 2996966 ~ 2998281 (-) |
| G190048 | LOC108273849,LOC108443156,LOC107684759 | non-coding | downstream | 13340 | 2911012 ~ 2911255 (-) |
| G189882 | NA | non-coding | downstream | 96788 | 2796507 ~ 2827807 (-) |
| G189885 | NA | non-coding | downstream | 121631 | 2792827 ~ 2802964 (-) |
| G189855 | NA | non-coding | downstream | 223175 | 2694780 ~ 2701420 (-) |
| G189810 | NA | non-coding | downstream | 269088 | 2655303 ~ 2655507 (-) |
| G190076 | NA | non-coding | upstream | 124127 | 3077031 ~ 3077290 (-) |
| G190094 | NA | non-coding | upstream | 203007 | 3155911 ~ 3156150 (-) |
| G190097 | NA | non-coding | upstream | 217979 | 3170883 ~ 3171571 (-) |
| G190099 | NA | non-coding | upstream | 220156 | 3173060 ~ 3173967 (-) |
| G190100 | NA | non-coding | upstream | 221173 | 3174077 ~ 3175635 (-) |
| ndufa4 | ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 | other | downstream | 69102 | 2852055 ~ 2855493 (-) |
| LOC117598559 | NA | other | downstream | 96843 | 2793046 ~ 2827752 (-) |
| LOC113547504 | LOC108273577,LOC108273573 | other | downstream | 113204 | 2786081 ~ 2811391 (-) |
| smarcd2 | smarcd2,LOC107569192,LOC107694073,LOC107684754 | other | downstream | 314822 | 2591237 ~ 2609773 (-) |
| LOC113547489 | NA | other | downstream | 713616 | 2194344 ~ 2210979 (-) |
| trnap-cgg_3 | NA | other | upstream | 1958830 | 4911734 ~ 4918977 (-) |
| G191056 | taok2,LOC108273910 | other | upstream | 1996259 | 4949163 ~ 4952859 (-) |
| LOC113527048 | LOC108274181 | other | upstream | 2106594 | 5059498 ~ 5063418 (-) |
| gdpd3b | gdpd3 | other | upstream | 2531787 | 5484691 ~ 5490925 (-) |
| G191430 | NA | other | upstream | 2658216 | 5611120 ~ 5613954 (-) |
