LOC113547491 (LOC108273563)


Basic Information

Item Value
gene id LOC113547491
gene name LOC108273563
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3416204 ~ 3417931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947858.2
AATAATAAAGACAATGGAAATGAGCATGTACAATAAAAAAGGCATGTTCTATATACTGGTGAGAGCAGCAGTGGGTGAGAGTTATTGACAATTGGCCTGTGGATAAAAACTGTTCCTTAAACTTGTGGTTCTTGAGTTTACACTTCTGTAGCATCTACCTGATGGTAGGACTGTAAACAGGCTGTATTAAGGGTGGGTTCTGTCCATTATGATAGTGTGGGCTCTCCTGGTGACCCTGGTGTTGTACATGTCCTCCAGTGATGGGTAGGCTGCTTCTTTGAGGGTTTCAGCAGTTCTAACAACTCACTGAAGAGCCTTGAGGCCCTGAGCAGAGCATCTTCCAAACCAAACTGTCATGCTGCTGGCATCCAACTGTTCAGATATCACGACACTACTGTTAATACACTACATTTCACCCATATATGCTGTGGAGTTTGCAGTTGGCTTCCTTGGCAACCTGACTGTGATCCTGGGCTATGTGTTCTGCTTGCCTTCTTGGAAATCTACAAATGTGTACCTGTTTAATCTGGCGATTTCTGACCTCATCTTCCTGTGTACCTTACCAGTGCTGAcctataattacacacacaaccgAGAGTCCCCCCCTGTAAGCTGTGTAGTTATTCGCTACATCCTCCATGTTAACTTGTATGCCAGCATCCTTTTCatggtgtgggtgggtgtggaccgattattactgctgttataCCCACAACGCAACCACTTTCTGTTGAACTGGAAGGCCTCATTGTTCGTCAGTTTCCTGAACTGGATTTGGGTGACAATTGAGATCGGTCCTCACATCAACTTTATTATCAATGACCTAAAGAAAACCAACTGGACCAAGTGCAATGATTTTGCCAGCATGTACCAGACCACCCCTGTCCTGACCTACAGCTTGCTGCTCACCACTGTAGCATATGTGCTGCCACTGCTGACCTTGTATCAGTTATCAAGTAAGATGGTTTCTCTGCTCcagaagagagaggaagtgcTCGGGACATCCTTCCAAAGGTCAGTAAGCATTGTGAAGGCCGCGGTGGTCATGTTGTTGGTGCTGTACATGCCATATCATGTGATGAGGAACATACGCCTCGTATCACAGCTTCCTGGTTTGGGACTGTTGCAGTGCACAAAGGCCTACATTGAAGCAGTGTACATAATAACACGGCCGATTGCATTTTCTCACAGTGTCATAAACCCTGTGTTTTATGTCCTAATGACAGACAGGTTTAGAGAGGTCCTGCGGGACAAGTGGAAGAAGTTTGGAAGATTGGCAAAGCTTAGAAGATTGTCATAAGCAAATCAAAAAAGCAAAGAACTGGCCTTCATTTAAATCTTACTGTGGGGCATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947858.2 True 1355 mRNA 0.45 2 3416204 3417931

Neighbor

gene id symbol gene type direction distance location
LOC113547534 LOC100305049,LOC107084780,LOC108411452,LOC105894045,LOC107567432,LOC107670912,LOC105890759 coding upstream 150982 3261534 ~ 3265222 (+)
LOC113547507 NA coding upstream 162402 3251702 ~ 3253802 (+)
pkmyt1 NA coding upstream 166980 3244122 ~ 3249224 (+)
pelo pelo,LOC107653258,LOC107674509 coding upstream 240552 3169668 ~ 3175652 (+)
sult1st6 LOC108274122,LOC108274358,LOC108274359,LOC108411008 coding upstream 280038 3129716 ~ 3136166 (+)
prdm9 LOC108274183 coding downstream 249222 3667153 ~ 3680599 (+)
pemt pemt coding downstream 313854 3731785 ~ 3772629 (+)
cops3 cops3 coding downstream 416175 3834106 ~ 3849629 (+)
usp22 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 432747 3850678 ~ 3885740 (+)
dnajc9 dnajc9 coding downstream 476352 3894283 ~ 3899869 (+)
G190170 NA non-coding upstream 48911 3367094 ~ 3367293 (+)
G190160 NA non-coding upstream 63284 3352658 ~ 3352920 (+)
G190122 NA non-coding upstream 150494 3265501 ~ 3265710 (+)
G190033 NA non-coding upstream 181594 3234389 ~ 3234610 (+)
G190027 NA non-coding upstream 193895 3221937 ~ 3222309 (+)
LOC117598604 NA non-coding downstream 59139 3477070 ~ 3482359 (+)
G190258 NA non-coding downstream 59140 3477071 ~ 3477663 (+)
LOC117598607 NA non-coding downstream 59216 3477147 ~ 3477778 (+)
G190277 NA non-coding downstream 90094 3508025 ~ 3508227 (+)
G190279 NA non-coding downstream 92864 3510795 ~ 3511173 (+)
G190212 NA other upstream 11195 3401267 ~ 3405009 (+)
G190028 NA other upstream 176988 3238444 ~ 3239216 (+)
LOC113547538 NA other upstream 394595 2970125 ~ 3021609 (+)
G189864 NA other upstream 655194 2760693 ~ 2761010 (+)
pyyb NA other upstream 887384 2525056 ~ 2528820 (+)
LOC113547484 LOC108273453 other downstream 12382 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 279863 3697794 ~ 3723243 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other downstream 363230 3781161 ~ 3783609 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other downstream 485416 3903347 ~ 3930443 (+)
lrrc18b lrrc18 other downstream 1175176 4593107 ~ 4596029 (+)

Expression


Co-expression Network