slc4a1b (LOC108273570,LOC108410807)


Basic Information

Item Value
gene id slc4a1b
gene name LOC108273570,LOC108410807
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2618389 ~ 2638273 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947875.2
CATGAAGTTACCAAGTTGACCTGTTTAGTACATCAATATTATGGGTGAAGTTGCCTATGTGGAACTGAGCAAGCTGATGAAGAACGAGGGCGAGCAGGGTGGCCTGCAGGAGACAGGACAATGGCAGGGTTACAAAGAGAGCCGCGACCCCGAGGTTGGCTACTGGGAATCTTCTCAAGTCTCCTATCTGACCTTCAAGAGCCTCATGCAGCTCAGACAGGCGATGGACACCGGGGTGGTGATGTTGGACAGAGAAGAGCCATCGCTCTCCAGCATCATGGAGAAAATAGTGGATGAGATGATCGAGAAGAAGGAGATCAGCTCTGGCGACCGTGACGGGGTTTTGAAAGCTTTAACGCAGAATCGTAGCCAATCAGTGGAGACACAGGCTCTGACATCATCTTTAGAAATTCAGACTTTCTCCATTGCAGAAAAGAGAGATGCATCTGAAAGCGTGGAGGCCTCTGTGGTGTTCGTGGgggcTCTGGACTTCCTGGAGAAGCCGACCATGGCGTTCGTCCGCCTGAAGGAAGCCCGTGTTCTCGACTTCGCCGGGGCTTCAGCTCCTGTTCGCTTCATCTTTGTGCTGATTGGATCAACCACAAACGACGTGGACTACCACGAGACTGGACGAGCTATGACCGCACTTCTGGCAGATAACGTGTTCAACCAGGCAGCATTAAAAGCTCAGAGCGATAAAGAGCTGAATGATGCAATGACGGACTTCCTGGATTGCAGCGTGGTGATCCCGCCCACAGAGATTCAGGACGAAACCATGCTTGCGCCCATCATTGGCTTCCAGAAGAAGCTCCTGCAGGAGAGACTCCGCCCCTCTGAACCTCAGCGCCACCTCAACCCCCAAGCAGATAGGAGATCGTCTATTTCCAAAGTGCCTCCACCGGAGGATCCGCTGGTGCGCACCGGCATACCATTCGGAGGATTGATCAGAGATATGAGAAGACGctacaaacactacaagagTGACATCACTGACGCCATGAACGCTCAAGTCCTTGCTGCCGTAATCTTCATTTACTTTGCCGCCCTCTCCCCTGCTATCACCTTCGGCGGTCTGCTAGCTGATAAAGTTGATAGTATGATGGGAGTGTCAGAGCTCATGCTGTCTACGGCAGTGCAAGGTGTCATTTTCTGCCTGGTTGCCGCCCAGCCGGTCCTCGTCATCGGCTTCTCAGGACCGCTGCTGGTCTTCGAAGAGGCCTTCTATGGGTTCTGCAAGTCTCAGGACATCGAGTACATCGTAGGTAGAGTGTGGGTCGGCGTGTGGCTCATTGTCATCGTTGTGCTGATCGTGGCGATGGAGGGCAGCTTCCTGGTGCGCTTCATCTCCCGCTTCACCCAAGAGATTTTCTCCATCCTCATCTCCCTCATCTTCATTTACGAGACCTTCTCCAAACTCGGCAGTATTTTCAAGGCCCACCCTCTTAATCTCAACTACGAGCACTTGAACACCTCAGTTGCAGATCCTTGGCACCccatcatcactcatcacacGACTAATTCTACAGGCAACCTCACCACAGTCACCACCATCCGTTACCGTGCCTACCCCAACACGGCACTGCTCTCCATGTGCTTGATGTTCGGCTGCTTCTCCATCGCTTACTTCCTACGCATTTTCAAGAATGGATACTACCTGCCTGGCAAGGTTCGTCGTTTGATGGGTGACTTTGGTGTCCCCATCGCTCTTTTCCTCATGGTTGCTGTGGATATCAGTATTAATGACACCTACACACAAAAACTAGTGGTTCCTAAGGGCTTGCAGGTGTCTAACCCTGCCATGCGAGGCTGGCTCATTAACCCCATGGGCGAGCACAAGCCTTTCCCCACCTGGATGATGTTTGCTTGTGTCGTGCCCGCCATTCTGgtcttcatcctcatcttcctTGAATCACAGATCACTACGTTAATTGTGAGTAAACCCGAGAGGAAGATGGTGAAAGGTTCTGGCTTCCATCTCGATCTTCTGATTTTGGTGTGCATGGGAGGGTTCAGTGCTTTCTTTGGAATGCCGTGGCTCAGCGCTGCCACAGTTCGCTCTGTAACACACGCCAATGCCCTGACTGTCATGAGCAAAGGGCCCAAACCGGAGATCGAGAAGGTTCTGGAACAGAGGATTAGTGGTATATTGGTGGCCCTCCTTGTGGGAATGTCCATCCTCATGGAGCCCATTCTGAAGATGATCCCCATAGCGGCTTTGTTTGGAATCTTCCTCTACATGGGAGTCACATCTCTGAGTGGCATTCAGCTGTGGGATCGCATGCTGCTGCTCCTTATTCCAAAGAAGTACCACCCCAATGAACCGTATGCTCAAAGAGTGAAGATGAGCAGGATGCATATGTTCACGGGGATCCAGATTGTGTGCCTGGCCGTGCTGTGGATAGTGAAGTCAAGCCCATTGTCACTCGCCCTGCCCTTCATCCTCATCCTGACCATCCCACTGCGCATGTACCTCAGCCGTCGCCTCTTCACCAAGCTCGAGATGAAATGCCTGGATGCTGATGATGCCAAAGTGACGTTTGAGGAGGAGCCCGGCGTGGACGTGTACTCAGAGACCCGGATGCCATCGTAAATATGTTACACCAACGATGCGAAGGCTACTTTCAGTCCCATATTGGCTTGTGATATAGAGATGCTTAATAAATGCAGTGTATGCACAAGTATCTCCAAGTTAAATGGAGTTAAACCAAGTTAAACCACTATGCTGAACAATTGCCATATTAACCCCTTGaagtctaaaaaaaatttaatattttgccatacattttgttttgctgtattAAACCACCTTAAAAAGTTTTTAA

Function

NR:

description
band 3 anion exchange protein-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015698 inorganic anion transport biological_process
GO:0015701 bicarbonate transport biological_process
GO:0042891 obsolete antibiotic transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function
GO:0042895 obsolete antibiotic transmembrane transporter activity molecular_function
GO:0015106 bicarbonate transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947875.2 True 2822 mRNA 0.51 19 2618389 2638273

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 2623 2606033 ~ 2615766 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 28244 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 255104 2361824 ~ 2363285 (-)
samd14 NA coding downstream 272716 2335633 ~ 2345673 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding downstream 283737 2308241 ~ 2334652 (-)
LOC113547505 NA coding upstream 93943 2732216 ~ 2745395 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 217963 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 236243 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 286322 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 319166 2957439 ~ 2967729 (-)
G189717 NA non-coding downstream 14293 2603193 ~ 2604096 (-)
G189702 NA non-coding downstream 218913 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 337636 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 455818 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 471474 2146712 ~ 2146915 (-)
G189810 NA non-coding upstream 17030 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 56507 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 154554 2792827 ~ 2802964 (-)
G189882 NA non-coding upstream 158234 2796507 ~ 2827807 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 272739 2911012 ~ 2911255 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 8616 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 407410 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 748396 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 844869 1760834 ~ 1773520 (-)
G189199 NA other downstream 1047316 1568286 ~ 1571073 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 147808 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 154773 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 213782 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2273461 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2310890 4949163 ~ 4952859 (-)

Expression


Co-expression Network