ppp1cab (ppp1cab,LOC108274218,LOC108413689,LOC105894037,LOC107556769,LOC107674520)


Basic Information

Item Value
gene id ppp1cab
gene name ppp1cab,LOC108274218,LOC108413689,LOC105894037,LOC107556769,LOC107674520
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3159988 ~ 3167791 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947876.2
GAGCGCCCTAAAGCGGTAGGTGAGACCGGAAACGGCTTTGACGCGCTGGTCGTGTAGACGgcgctgttttttttatacGGATTAACTAGTGAAAACGACGGGACTTTATATTAATTGAACATTAATGCTGTGAGTCAATCGACCAGGGTTATTTCCTGTAAGCTTATCTAGTTCTGTTCAGctctggttttttttaaaaaaagatttttatcgTTTTTTAAATCGTGTATCGTGAGAGCGAGCCAGCGCGAGGCCGGGTGTGCGCGAGCTTCCTCCTGTTGCGGGCAGGTTAGCTTGCTGGCTAAATCCTGAGGTAATCGTTCAGatagaggaaaaacaaaaggaaaaaaacacgaAAAATGACCGAATCGGACAAATTAAACATCGATTCTATCATCCAGCGTCTTCTGGAAGTGAAAGGCTCCAGACCCGGTAAAAACGTGCAGCTGACAGAGAATGAGATCCgtgggctgtgtctcaaatccagggagattttcctcagCCAGCCCATCCTCCTCGAGCTGGAAGCACCTCTGAAAATTTGCGGTGATGTTCACGGTCAGTACTACGACCTGCTCCGGCTGTTTGAGTACGGCGGATACCCTCCGGAGAGTAACTACCTGTTTTTGGGAGACTACGTGGACCGAGGGAAGCAGTCTTTGGAGACCATCTGCTTGTTGTTGGCCTACAAGATCAAATACCCAGAGAACTTTTTCCTGCTGCGAGGGAACCACGAGTGCGCCTCCATCAACAGGATATACGGCTTCTACGacgagtGTAAAAGACGCTACAACATTAAACTGTGGAAGACGTTTACAGACTGCTTTAACTGCTTACCCGTGGCAGCCATTGTCGACGAGAAGATTTTCTGCTGCCACGGAGgcTTGTCTCCGGACTTGCAGTCGATGGAGCAGATCCGGCGGGTGATGAGACCCACGGATGTGCCGGATCAGGGGCTGCTGTGTGACCTGCTGTGGGCCGACCCTGATAAAGACGTGACGGGCTGGGGGGAAAACGACCGCGGCGTCTCCTTCACCTTCGGCTCTGATGTTGTCGCCAAGTTCCTGCACAAACACGACATGGACCTCATCTGCAGAGCGCACCAGGTGGTGGAGGATGGATACGAGTTCTTTGCGAAGCGGCAGCTGGTGACACTCTTCTCCGCCCCGAACTACTGCGGCGAGTTCGACAACGCCGGCGCCATGATGAGCGTGGACGAGACGCTCATGTGCTCCTTCCAGATCTTGAAACCTGCTGACAAGAAGCTGTTGGCGTACAGCGGTGCTGGAGCTTTCGGATCTGGCCGACCCGTTACACCACCAAGAAACGCTGCCAAGGGAGGCAAAGCCAAGAAATAACACAAAccattacacaacacacactcacacaccgtctcttcctctcctttttCCTTCAGTCTACCTCTCCTTTTATTCCTCGTCTttcacatttctctcttttctcgctatgaatgtgtgtttttttttttttatttgaccaATTATGAGCATATAATGTTttagagtatgtgtgtgtgtttgcgggGATTGGGGGGTAGGAGTTTAAGATCCCTTTATCTTTACCTTCTATCACTTTTCTTCATCATAGATGTATAGAAATAAACACAAGTCCCttttagggatttttttttattggaccTAAGCAATTTTTTCCCTCTTGAGTCTCAGGGTCCGACACACCTTTATCTTCTGAAGCAATCGCTATAATTGTGTGGGCGCGCGCGTGTGTTTTATCACTGCCACTCTTAAATGTGAAATGCGTGTTTTCCTGTTTCATCAGCAGATGGAGTGCTGGAGTTTAGGACAAGATATGCgtgtggtttttttattttattcttcatcTTAGAACTCATGTAGACAGGCAGGGCCAACATTGACCCATTTGTACAAAATATCTCTggcattctctctcttctcttcacgTTTACTTCCTTTACTGATGTGAGCGATCAGCTTTACTGTCTCTTTCAGTAAaggtctttttttgtttgttcaacATCACACATTAGATTTGTACAGCGCATTACTTGAATAAGAAAATCTCTTCCTTGTTTTGTAGTTATTCATGAACTTGGACAATAAAGTGAGAATCTCTTGCAAGAAA

Function

symbol description
ppp1cab Predicted to enable protein serine/threonine phosphatase activity. Acts upstream of or within angiogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in female organism. Orthologous to human PPP1CA (protein phosphatase 1 catalytic subunit alpha).

NR:

description
serine/threonine-protein phosphatase alpha-2 isoform-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947876.2 True 2124 mRNA 0.47 7 3159988 3167791

Neighbor

gene id symbol gene type direction distance location
atp2a1l atp2a1l,LOC108274121,LOC108411009,LOC107716472,LOC107653256 coding downstream 8532 3137134 ~ 3151456 (-)
LOC113547508 LOC108274004 coding downstream 41924 3107185 ~ 3118064 (-)
LOC113547488 doc2a,LOC108274005,LOC108411015,LOC102798681 coding downstream 91847 3033048 ~ 3068141 (-)
LOC113547498 LOC108274359,LOC108274358,LOC108274122 coding downstream 139229 3008265 ~ 3020759 (-)
LOC113547499 LOC108274363 coding downstream 161707 2996966 ~ 2998281 (-)
LOC113547533 paqr4 coding upstream 9113 3176904 ~ 3180468 (-)
cmn NA coding upstream 15279 3183070 ~ 3205679 (-)
patl2 patl2 coding upstream 45067 3212858 ~ 3221523 (-)
LOC113547516 tgfb1i1,tgfi1 coding upstream 54639 3222430 ~ 3233921 (-)
LOC113547469 elob,tceb2,LOC102782282,LOC103367351,LOC100692966,LOC103036770,LOC108427344,LOC102795145 coding upstream 70628 3238419 ~ 3242643 (-)
G190094 NA non-coding downstream 3838 3155911 ~ 3156150 (-)
G190076 NA non-coding downstream 82698 3077031 ~ 3077290 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding downstream 248733 2911012 ~ 2911255 (-)
G189882 NA non-coding downstream 332181 2796507 ~ 2827807 (-)
G189885 NA non-coding downstream 357024 2792827 ~ 2802964 (-)
G190097 NA non-coding upstream 3092 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 5269 3173060 ~ 3173967 (-)
G190100 NA non-coding upstream 6286 3174077 ~ 3175635 (-)
G190188 NA non-coding upstream 181583 3349374 ~ 3349729 (-)
G190232 NA non-coding upstream 259645 3427436 ~ 3427644 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 304495 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 332236 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 348597 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 550215 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 949009 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1743943 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1781372 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1891707 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2316900 5484691 ~ 5490925 (-)
G191430 NA other upstream 2443329 5611120 ~ 5613954 (-)

Expression


Co-expression Network